NO27G01510, NO27G01510 (gene) Nannochloropsis oceanica

Overview
NameNO27G01510
Unique NameNO27G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr27:501830..503114 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:501830..503114 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G01510 vs. NCBI_GenBank
Match: XP_005855793.1 (hypothetical protein NGA_0631100 [Nannochloropsis gaditana CCMP526] >EKU20569.1 hypothetical protein NGA_0631100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.1 bits (279), Expect = 8.600e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 
Query:   10 MTKLFTVICHKLKPTDLLKVSRQGQPRALRSEAQIFGTTIPAIKPGKTLGSLSSLALTSRTATSSSVPLFLMPK 84
            MTK+F VI +K KPTDLL V+RQGQPRALR+EAQIFG+T+P IKPGKTLGSLSS A T RTATSSSVPL+  PK
Sbjct:    1 MTKVFAVISNKFKPTDLLVVARQGQPRALRNEAQIFGSTLPPIKPGKTLGSLSSFAFTKRTATSSSVPLYATPK 74
The following BLAST results are available for this feature:
BLAST of NO27G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855793.18.600e-2277.03hypothetical protein NGA_0631100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01510.1NO27G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01510.1NO27G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01510 ID=NO27G01510|Name=NO27G01510|organism=Nannochloropsis oceanica|type=gene|length=1285bp
CAAGATGCCGTCGTCATACCTACGGTCCTCTGCCAGTGTTGTGTGTCCAT
GGGTGCGCCTGTGCTTCTGAATAAGTGGCTGCGCTACTTAGTCTAACAAG
GGCCTCTCGTTTGGTTGTCGTGGGAACCAACGTGCCAAACCCTGTTCCTC
CTTTGCCAAAGCACGAGCACCGCCGCCCTCCTCATCATCCTTTCCTCCAT
CTGCTCGACATGAATACCACCACAGGAGACAGCAGCATGACGAAGCTCTT
CACCGTCATTTGCCACAAGCTTAAGCCTACGGATCTGCTAAAAGTGTCTC
GCCAAGgtaaggaaaccacacaaaaagagagggggcgaaaagggagggca
cgatgagcgttgcttgcgtcttttgcgtgtttctatgaatgtgtatgggt
ttgtttaaggcaacaaccatgttcaaggatagctggagataagtgcattt
gtaactatggtggttgtgtgtagatggggatactgggagtccaggaagaa
gtacacttgagttaggtcggaggtgggtgggagatggatgtggagagggg
gagagcagcggaaggagagacaactctctccatcagattcatacccccga
ctcatgcgtgtacttcactctttgatggacaagagcaggctaactttgag
atgacctccattcccttctttccgcttgccattatcaaatatatgccatg
atcttgcctcccctcttctctccccctcctttcctctcacgacataccat
gacatatgctcatatcaatcttccgtccttaaccgcactgctacgtacag
GTCAACCCCGTGCCCTCCGTAGCGAGGCCCAGATCTTTGGCACCACCATC
CCgtaagtaccctccctcggtccctccgtccctccgtcccttcttccctc
tcgtccttcgtcctctgcccgacaagacttcgggctcgtcgtccctcgcc
ctcaccaacagtatggcagttcctcttattctatccctttctttaaatac
tctgaaaatcctttcccccctccctcctccctccccctccgctttctgca
gTGCCATCAAGCCCGGCAAGACCTTGGGCTCCTTGTCGTCTCTCGCCCTC
ACCAGCCGCACAGCTACTTCCTCCTCTGTGCCCCTCTTTTTGATGCCCAA
GTGATAATAAGTGACGAGAATGGACGAAGAGGAAGAGATATGGAGGGATG
GATGGTAAGAGGGAGCATTCGGAGTAGAGGAGGTTTTGATTGATTCGTAT
AATGAAAAAACCACATGTAGCTACACTTTGGAGAA
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protein sequence of NO27G01510.1

>NO27G01510.1-protein ID=NO27G01510.1-protein|Name=NO27G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MNTTTGDSSMTKLFTVICHKLKPTDLLKVSRQGQPRALRSEAQIFGTTIP
AIKPGKTLGSLSSLALTSRTATSSSVPLFLMPK*
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Synonyms
Publications