NO27G01510.1, NO27G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01510.1
Unique NameNO27G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length592
Alignment locationchr27:501830..503114 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:501830..503114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01510.1 vs.
Match: XP_005855793.1 (hypothetical protein NGA_0631100 [Nannochloropsis gaditana CCMP526]; EKU20569.1 hypothetical protein NGA_0631100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.1 bits (279), Expect = 8.600e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 
Query:   10 MTKLFTVICHKLKPTDLLKVSRQGQPRALRSEAQIFGTTIPAIKPGKTLGSLSSLALTSRTATSSSVPLFLMPK 84
            MTK+F VI +K KPTDLL V+RQGQPRALR+EAQIFG+T+P IKPGKTLGSLSS A T RTATSSSVPL+  PK
Sbjct:    1 MTKVFAVISNKFKPTDLLVVARQGQPRALRNEAQIFGSTLPPIKPGKTLGSLSSFAFTKRTATSSSVPLYATPK 74
The following BLAST results are available for this feature:
BLAST of NO27G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855793.18.600e-2277.03hypothetical protein NGA_0631100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01510NO27G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01510.1NO27G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01510.1.cds1NO27G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01510.1.cds2NO27G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01510.1.cds3NO27G01510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01510.1 ID=NO27G01510.1|Name=NO27G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=592bp
CAAGATGCCGTCGTCATACCTACGGTCCTCTGCCAGTGTTGTGTGTCCAT
GGGTGCGCCTGTGCTTCTGAATAAGTGGCTGCGCTACTTAGTCTAACAAG
GGCCTCTCGTTTGGTTGTCGTGGGAACCAACGTGCCAAACCCTGTTCCTC
CTTTGCCAAAGCACGAGCACCGCCGCCCTCCTCATCATCCTTTCCTCCAT
CTGCTCGACATGAATACCACCACAGGAGACAGCAGCATGACGAAGCTCTT
CACCGTCATTTGCCACAAGCTTAAGCCTACGGATCTGCTAAAAGTGTCTC
GCCAAGGTCAACCCCGTGCCCTCCGTAGCGAGGCCCAGATCTTTGGCACC
ACCATCCCTGCCATCAAGCCCGGCAAGACCTTGGGCTCCTTGTCGTCTCT
CGCCCTCACCAGCCGCACAGCTACTTCCTCCTCTGTGCCCCTCTTTTTGA
TGCCCAAGTGATAATAAGTGACGAGAATGGACGAAGAGGAAGAGATATGG
AGGGATGGATGGTAAGAGGGAGCATTCGGAGTAGAGGAGGTTTTGATTGA
TTCGTATAATGAAAAAACCACATGTAGCTACACTTTGGAGAA
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protein sequence of NO27G01510.1

>NO27G01510.1-protein ID=NO27G01510.1-protein|Name=NO27G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MNTTTGDSSMTKLFTVICHKLKPTDLLKVSRQGQPRALRSEAQIFGTTIP
AIKPGKTLGSLSSLALTSRTATSSSVPLFLMPK*
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mRNA from alignment at chr27:501830..503114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01510.1 ID=NO27G01510.1|Name=NO27G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp|location=Sequence derived from alignment at chr27:501830..503114- (Nannochloropsis oceanica)
CAAGATGCCGTCGTCATACCTACGGTCCTCTGCCAGTGTTGTGTGTCCAT
GGGTGCGCCTGTGCTTCTGAATAAGTGGCTGCGCTACTTAGTCTAACAAG
GGCCTCTCGTTTGGTTGTCGTGGGAACCAACGTGCCAAACCCTGTTCCTC
CTTTGCCAAAGCACGAGCACCGCCGCCCTCCTCATCATCCTTTCCTCCAT
CTGCTCGACATGAATACCACCACAGGAGACAGCAGCATGACGAAGCTCTT
CACCGTCATTTGCCACAAGCTTAAGCCTACGGATCTGCTAAAAGTGTCTC
GCCAAGGTAAGGAAACCACACAAAAAGAGAGGGGGCGAAAAGGGAGGGCA
CGATGAGCGTTGCTTGCGTCTTTTGCGTGTTTCTATGAATGTGTATGGGT
TTGTTTAAGGCAACAACCATGTTCAAGGATAGCTGGAGATAAGTGCATTT
GTAACTATGGTGGTTGTGTGTAGATGGGGATACTGGGAGTCCAGGAAGAA
GTACACTTGAGTTAGGTCGGAGGTGGGTGGGAGATGGATGTGGAGAGGGG
GAGAGCAGCGGAAGGAGAGACAACTCTCTCCATCAGATTCATACCCCCGA
CTCATGCGTGTACTTCACTCTTTGATGGACAAGAGCAGGCTAACTTTGAG
ATGACCTCCATTCCCTTCTTTCCGCTTGCCATTATCAAATATATGCCATG
ATCTTGCCTCCCCTCTTCTCTCCCCCTCCTTTCCTCTCACGACATACCAT
GACATATGCTCATATCAATCTTCCGTCCTTAACCGCACTGCTACGTACAG
GTCAACCCCGTGCCCTCCGTAGCGAGGCCCAGATCTTTGGCACCACCATC
CCGTAAGTACCCTCCCTCGGTCCCTCCGTCCCTCCGTCCCTTCTTCCCTC
TCGTCCTTCGTCCTCTGCCCGACAAGACTTCGGGCTCGTCGTCCCTCGCC
CTCACCAACAGTATGGCAGTTCCTCTTATTCTATCCCTTTCTTTAAATAC
TCTGAAAATCCTTTCCCCCCTCCCTCCTCCCTCCCCCTCCGCTTTCTGCA
GTGCCATCAAGCCCGGCAAGACCTTGGGCTCCTTGTCGTCTCTCGCCCTC
ACCAGCCGCACAGCTACTTCCTCCTCTGTGCCCCTCTTTTTGATGCCCAA
GTGATAATAAGTGACGAGAATGGACGAAGAGGAAGAGATATGGAGGGATG
GATGGTAAGAGGGAGCATTCGGAGTAGAGGAGGTTTTGATTGATTCGTAT
AATGAAAAAACCACATGTAGCTACACTTTGGAGAA
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Coding sequence (CDS) from alignment at chr27:501830..503114-

>NO27G01510.1 ID=NO27G01510.1|Name=NO27G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at chr27:501830..503114- (Nannochloropsis oceanica)
ATGAATACCACCACAGGAGACAGCAGCATGACGAAGCTCTTCACCGTCAT
TTGCCACAAGCTTAAGCCTACGGATCTGCTAAAAGTGTCTCGCCAAGGTC
AACCCCGTGCCCTCCGTAGCGAGGCCCAGATCTTTGGCACCACCATCCCT
GCCATCAAGCCCGGCAAGACCTTGGGCTCCTTGTCGTCTCTCGCCCTCAC
CAGCCGCACAGCTACTTCCTCCTCTGTGCCCCTCTTTTTGATGCCCAAGT
GA
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Synonyms
Publications