NO27G01460, NO27G01460 (gene) Nannochloropsis oceanica

Overview
NameNO27G01460
Unique NameNO27G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5161
Alignment locationchr27:475791..480951 -

Link to JBrowse

Properties
Property NameValue
Descriptionribosomal RNA processing 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:475791..480951 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR036612KH_dom_type_1_sf
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR004088KH_dom_type_1
Homology
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: POM78163.1 (Exosome complex uclease RRP4 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 235.7 bits (600), Expect = 6.400e-58
Identity = 133/285 (46.67%), Postives = 179/285 (62.81%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            LA  ++ VV  PGQV+       E G AF+RGHGTY                    G+  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+T+V +KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H  TLP  G+DVILG NGY+WVSRS++    GG +      ++T + EVL A +  HAA P +  +R +IARV  ALL L++ F  I+ ++I
Sbjct:   19 LADESQVVVVTPGQVI-----STETG-AFLRGHGTY------------------LSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTDVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGYIWVSRSMAAL--GGDDEDTASNMET-RVEVLTAKRQLHAATPMSVDDRRKIARVSQALLRLNEQFRMITPDSI 276
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: GAX99864.1 (exosome complex exonuclease RRP4 [Pythium insidiosum])

HSP 1 Score: 235.0 bits (598), Expect = 1.100e-57
Identity = 134/282 (47.52%), Postives = 179/282 (63.48%), Query Frame = 0 
Query:  722 VVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTG----KAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            VV  PG+V+       E G AF+RGHGTY   +                    L A   G++E+VN+L+TV P  +RY G +GD+VVGR+TEVG KRWKVD+ G +DA L LS+V LP G QR R +ED LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V VRPSLV+R K H +TLP  GVDVILG NGY+W+SRSLS + +G  +    E+   G    + EVL   +  HAA   + ++R +IARV  A+L L++ F  I+ ++I
Sbjct:   29 VVVTPGEVI-----STETG-AFLRGHGTYLSNN-------------------ELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGNKRWKVDVNGQQDAGLMLSSVTLPGGAQRRRTYEDQLQMRSFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVRPSLVKRMKQHMVTLPTLGVDVILGTNGYLWISRSLS-ALDGVDDVASTEDTGPGSMETRVEVLTHKRQRHAATKMSHEDREKIARVYRAVLQLNEQFRVITPDSI 284
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: XP_008893483.1 (hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >ETI44946.1 hypothetical protein F443_10390 [Phytophthora parasitica P1569] >ETK84912.1 hypothetical protein L915_10168 [Phytophthora parasitica] >ETL38331.1 hypothetical protein L916_10074 [Phytophthora parasitica] >ETL91446.1 hypothetical protein L917_10005 [Phytophthora parasitica] >ETM44758.1 hypothetical protein L914_10038 [Phytophthora parasitica] >ETN21721.1 hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >ETO73554.1 hypothetical protein F444_10503 [Phytophthora parasitica P1976] >ETP14738.1 hypothetical protein F441_10343 [Phytophthora parasitica CJ01A1] >ETP42808.1 hypothetical protein F442_10307 [Phytophthora parasitica P10297])

HSP 1 Score: 234.6 bits (597), Expect = 1.400e-57
Identity = 135/294 (45.92%), Postives = 178/294 (60.54%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETIERVCAVSEA 1009
            LA  ++ VV  PGQV I  D       AF+RGHGTY                    G+  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+TEV +KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H  TLP  G+DVILG NGY+WVSRS++      L G         + EVL A +  HAA P + ++R +IARV  ALL L++ F  I+ ++I     + EA
Sbjct:   21 LADESQVVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGYIWVSRSMA-----ELGGDDTTSNMETRVEVLTAKRQLHAATPMSVEDRRKIARVSQALLKLNEQFRMITPDSIMATYELLEA 285
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: KUF64836.1 (Exosome complex component RRP4 [Phytophthora nicotianae])

HSP 1 Score: 234.6 bits (597), Expect = 1.400e-57
Identity = 135/294 (45.92%), Postives = 178/294 (60.54%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETIERVCAVSEA 1009
            LA  ++ VV  PGQV I  D       AF+RGHGTY                    G+  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+TEV +KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H  TLP  G+DVILG NGY+WVSRS++      L G         + EVL A +  HAA P + ++R +IARV  ALL L++ F  I+ ++I     + EA
Sbjct:   19 LADESQVVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGYIWVSRSMA-----ELGGDDTTSNMETRVEVLTAKRQLHAATPMSVEDRRKIARVSQALLKLNEQFRMITPDSIMATYELLEA 283
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: XP_002903329.1 (exosome complex exonuclease RRP4 [Phytophthora infestans T30-4] >EEY55753.1 exosome complex exonuclease RRP4 [Phytophthora infestans T30-4])

HSP 1 Score: 234.2 bits (596), Expect = 1.900e-57
Identity = 136/295 (46.10%), Postives = 179/295 (60.68%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETIERVCAVSEAL 1010
            LA  ++ VV  PGQV I  D       AF+RGHGTY                    G+  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+TEV +KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H  TLP  G+DVILG NGY+WVSRS++      L G         + EVL A +  HAA P +  +R +IARV  ALL L++ F  I+ ++I    A+ EA+
Sbjct:   21 LADESQVVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGYIWVSRSMA-----ELGGDDTTSSMETRVEVLTAKRQQHAATPMSVDDRRKIARVSQALLKLNEQFRMITPDSI-MATAIMEAI 285
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: OQR87087.1 (exosome complex exonuclease RRP4 [Achlya hypogyna])

HSP 1 Score: 233.8 bits (595), Expect = 2.400e-57
Identity = 130/281 (46.26%), Postives = 176/281 (62.63%), Query Frame = 0 
Query:  719 AEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            A+ VV  PGQV+            F+RGHGTY E                      L A   G++E+VN+LV+V P  +RY G +GD+VVGRI+EVG+KRWKVD+ G +DAVL LS+V LP G QR R +ED LQMR F++E +LISAEVQ +  DGT+ LHTR++RYGKL+NG L+ V+PSLV+R K H + LP  G+DVILG NGY+WVSRS+    E              +A+V    +  HAA  T++++R +IA+V NA+  L+  F +I+ E+I
Sbjct:   27 AQYVVVTPGQVITSEP-------GFLRGHGTYVENG-------------------ELLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLVKRLKQHMLQLP-IGIDVILGCNGYIWVSRSIEHDAE-------SLTTNESRADVWTERKATHAATVTSAEDRKKIAKVTNAIAQLNTRFQTITPESI 273
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: XP_009531292.1 (hypothetical protein PHYSODRAFT_249437 [Phytophthora sojae] >AAM20932.1 exonuclease [Phytophthora sojae] >EGZ13863.1 hypothetical protein PHYSODRAFT_249437 [Phytophthora sojae])

HSP 1 Score: 231.9 bits (590), Expect = 9.300e-57
Identity = 129/281 (45.91%), Postives = 173/281 (61.57%), Query Frame = 0 
Query:  719 AEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            ++ VV  PGQV I  D       AF+RGHGTY                    G+  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+T+V  KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLIS E+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H +TLP  G+DVILG NGY+WVSRS++    GG +          + EVL A +  HA+ P + ++R +IARV  ALL L++ F  I+ E+I
Sbjct:   64 SQIVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTDVANKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISTEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMVTLPGLGIDVILGTNGYIWVSRSMAAL--GGDDAEDTSSSMETRVEVLTAKRQLHASTPMSVEDRRKIARVSQALLKLNEQFRLITPESI 318
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: OWZ03623.1 (Exosome complex uclease [Phytophthora megakarya])

HSP 1 Score: 230.7 bits (587), Expect = 2.100e-56
Identity = 132/294 (44.90%), Postives = 177/294 (60.20%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETIERVCAVSEA 1009
            LA  ++ VV  PGQV I  D       AF+RGHGTY                     +  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+T+V +KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H +TLP  G+DVILG NGY+WVSRS++   E       E      + EVL A +  HA  P +  +R +IARV  ALL L++ F  I+ ++I  +  + EA
Sbjct:   19 LADESQVVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSSRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTDVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMVTLPGIGIDVILGTNGYIWVSRSMAELGEEDATSNMET-----RVEVLTAKRQLHANTPMSVDDRRKIARVAQALLRLNEKFQMITPDSIMAMYELLEA 283
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: XP_012206293.1 (hypothetical protein SPRG_11851 [Saprolegnia parasitica CBS 223.65] >KDO23005.1 hypothetical protein SPRG_11851 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 228.4 bits (581), Expect = 1.000e-55
Identity = 127/281 (45.20%), Postives = 172/281 (61.21%), Query Frame = 0 
Query:  719 AEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            A+ VV  PGQV+            F+RGHGTY E                      L A   G++E+VN+LV+V P  +RY G +GD+VVGRI+EVG+KRWKVD+ G +DAVL LS+V LP G QR R +ED LQMR F++E +LISAEVQ +  DGT+ LHTR++RYGKL+NG L+ V+P+LV+R K H + LP  G+DVILG NGY+W++R +    E              +A+V    +  HAA PT + +R +IA V N L  L+  F +I+ E+I
Sbjct:    6 AQYVVVTPGQVITSEP-------GFLRGHGTYVENG-------------------ELLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIAVQPALVKRLKQHMLQLP-IGIDVILGCNGYIWIARRIEHDAE-------SLTTNESRADVWTERKATHAATPTDAADRKKIAAVYNVLSTLNAQFKTITPESI 252
[Close]
BLAST of NO27G01460 vs. NCBI_GenBank
Match: XP_024580870.1 (exosome complex exonuclease rrp4 [Plasmopara halstedii] >CEG44501.1 exosome complex exonuclease rrp4 [Plasmopara halstedii])

HSP 1 Score: 228.4 bits (581), Expect = 1.000e-55
Identity = 131/285 (45.96%), Postives = 172/285 (60.35%), Query Frame = 0 
Query:  715 LAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTYQEEDXXXXXXXXXXXXXXXGGKVRLCACNGGIIERVNKLVTVLPPKTRYQGAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHEDVLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPSLVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQTGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETI 1000
            L +  E VV  PGQV I  D       AF+RGHGTY                     +  L A   G++E+VN+L+TV P  +RY G +GD+VVGR+TEVG+KRWKVD+ G +DA L LS+V LP G QR R + D LQMR F+ E DLISAE+Q +  DG++ LHTR++RYGKL+NG  V V   LV+R K H  TLP  GVDVILG NGY+WVSR++    +       E      + EVL A +  HAA P + ++R +IA V  ALL L++ F  I+ ++I
Sbjct:   19 LENETELVVVTPGQV-ISTDTG-----AFLRGHGTY------------------LSNRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGSKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVSAPLVKRMKQHMATLPGIGVDVILGTNGYIWVSRTMPDVGDDDTTSNMET-----RVEVLTAKRQLHAATPMSVEDRRKIACVSQALLRLNEQFQMITPDSI 274
The following BLAST results are available for this feature:
BLAST of NO27G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
POM78163.16.400e-5846.67Exosome complex uclease RRP4 [Phytophthora palmivo... [more]
GAX99864.11.100e-5747.52exosome complex exonuclease RRP4 [Pythium insidios... [more]
XP_008893483.11.400e-5745.92hypothetical protein PPTG_01840 [Phytophthora para... [more]
KUF64836.11.400e-5745.92Exosome complex component RRP4 [Phytophthora nicot... [more]
XP_002903329.11.900e-5746.10exosome complex exonuclease RRP4 [Phytophthora inf... [more]
OQR87087.12.400e-5746.26exosome complex exonuclease RRP4 [Achlya hypogyna][more]
XP_009531292.19.300e-5745.91hypothetical protein PHYSODRAFT_249437 [Phytophtho... [more]
OWZ03623.12.100e-5644.90Exosome complex uclease [Phytophthora megakarya][more]
XP_012206293.11.000e-5545.20hypothetical protein SPRG_11851 [Saprolegnia paras... [more]
XP_024580870.11.000e-5545.96exosome complex exonuclease rrp4 [Plasmopara halst... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01460.1NO27G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608393gene_9932Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101081g2gene9828Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01460.1NO27G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01460 ID=NO27G01460|Name=NO27G01460|organism=Nannochloropsis oceanica|type=gene|length=5161bp
ATGGCGCAGCTTGGACTGACTGGTCGAGCCGGGGCCATTCTGCTACTGGC
GATTGCCACCAGCAACCTCCACGGCATTGCGGAGGGGAAGACAGCGACGA
CAATTCTTGCTCACCCGGCAACAGCGGCGCGCGACGTGATCCTGACGGCC
GATGGTTCCAGCCCATCTCCTCACTCAAATTCAATCCTCGCCACTGAGCC
TGCCTCGGGCCTCTTCTACCTTGACAACATCGTGGACGAAGCTTCCATTA
CCATGCTCAAAACCCGTTTCAATCTGACAATGCAAACGGCTTCGGTGGAT
GGCCGTAGAATGATGGACGTGCCAATTGGGGTTGTGGCCAGGCTCGGGAC
AGCGCTACAGTATCGTCGCCTTGATTCAGTGATATTGCATGGTAATGATG
CCAGTGACGACAACGACAAGTATTTCAAGCACGGCCAAGCGCGATTTCAG
CTGCCTATCCAGGAGCACAAAAACGGGTTTGGGAACCACAAGGATCACTA
TTACCAGACCACTCTGCATGAAAAGCACGTGGTAGTAGAAGGCCAAGTGG
GAATTCTCTACTTGGATGGCGACGGTCAAATGATTTTTACGAACGACGAG
ACCAAAGCGGAGACCTCCATTGGCATTGTTGCAGGGCGCTTTATCGCCTG
GAATAACGCAGCCTTTACTCATCGCGTGGTGCACGGGCCGTTCAATATCA
TGCGGCGTATGATGGGACCTATGACATGGAATAATGTGGCTCAGGAGGAG
ACGCCCAAAGATGGTATTGCTCAGATCTATGGTGGCTTGTTGAGTGTGTG
TGGCGGAACTTCCCCTGCTCAATGTACAAACCTGACTGATTACCGGTGCG
ATGGAAATACCTATGTAAGCACCAGCGGAGGAAACACCAGCTGGTTTGAC
TGCGCGAGTTTTTGTGACGATAATATCGGCACCACTTTAGGGTATGGTCA
ATTTGACAGCACCAATAGCGTATGCTACTGTGGAGGCAATACTTCGTGCC
CTCTTTTCACACCTGATCCTGGCTTCATCCAATTCATGTACAATAGCGGT
GACGAAGACTGTCCAACTTTGACAGTGTCGCCCACACAACAGCCTTCTAC
ACAGCCCTCCAACAGCCCCTCTGGCGCTACTGGCGCTCCCACCTCCTATC
CTACCTTTGCCCCGCCGCCGCCCGACGCACCTGTCGAGATCCTGGGGCAA
GGATTCGTGTGCGGGCCAGAGGTCACCCTTGTCAGTAGACGTCATGCCAT
GGCAGCATCAGGGGCCGATATGGAGAGGACGGAGCGAGAGAAGCAGGCAG
GAGAGGAGTTCTTATCGGAAATTGGCCGGGACTATCATCAGCAACAGGGC
GCCTTGGACGCTGCATGGACACCGGAGACCTGTTTTGCTGCCTGCGCTCA
GCGATTGGGTAATCCTCCTTCCTTCGTGATCAATATCTACAATGACGGCG
GACAGCAAGTGTGCACCTGTTGTCGCTCCTGCGATGGGACCCGCTATGTC
CCTTCTGCCCAAACCTTTGCAGCATGTGGAGGCGTTGCAATGAATCTGAG
CCTCACGGCTAAGGCGAGCCGTGCAAAGGTCGGTGCACGGCGTGGGGGCA
AGATTACGTACACCGTCCGACTCAAGAACAGGCAGGCGTTTGAAAGTGGG
GTCGGCATGCGCATAGTCCTGCCCCCTCACATGACTTATGTCAGGAGCAA
ATCCAAGCCCCCGGTGTACAGCAATGTCTCGTTGTCGGCCGCAGGTATGG
GCAGGTTGTTGTTGCAGCAAGGTCAGAAATGGGGGGCCTCGGCTGCTGCT
AATGACACCCTCGTCGATTGGCCCGTGGTGCCCATGCCTGCTAAAAAGCG
ACGCAGGTTTATAGTCTACATGCGCGTGAAAGAGAGCGCACCGgtaggga
catcgttggtgttcacgagctatgtctaccaaagcactcccacgggtatc
accttttgtgataaatacgccgaggacttgacggtgttagtcaaaaaata
aaaattataccccgatcacgggaaaaggattcgcccaccggggaatgaaa
gtaacatggtatcctaacgtaaaggagtcgggagacatacatcaacgggt
ggaaagagacaatttccagaatatttgtagcatgaaggttgagaacgcaa
gcggtgcaacatagagagaaagaaatagcgggatagcgggggagcgaaga
gaagtagggaacaatgttgagtgagacctaaaattgggcaaaaaatcgac
gtgagtatgtttcgattgaaagtcatacagacgaaaagttaagcacatcc
tcttgacctgatagcggacatgcttatgccattgatcgcctcactttgaa
gttcagAGGAATGCCTTCCATTGGAAGGTGGAGGAGGAGGCGGAGGCGGT
GGAAGCAGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGAGG
AGGCGGAGGAGAACGAGGACGAGGCAGAGGAGGAGGTCATGAGCGGGCCA
TCCGAGGACTGTATTGGTGTGACACCTGTGAACAGTTCGTGTCCCGGGAC
GGCAATGGGGCACGTAACATCCTACGGGTGTACAGGAGTATGgtccgtgg
ggaagctcgtccccatgatcttcgctttggtcaagcgcggcaagatatgc
gggcactctatgtgtagcgttcccgctgacctcctcttttatcctccttc
cccttctcctcctggccctgtgtgggccgtccggggactttgccttgtca
aaaaacctgtcaaagtcgctagaaaaactcgcacaaggaaataagggatg
aatatgcaacattttattgttggaaggctcctcctcgtatgcaagtcctc
gaggacgcaggttgcatgcgatagttctagagggatgtaggaacagaaaa
aaagagctaaatgatgtagggtggtatggctatgtgccacttcggcgaga
tccaaccgcgcacttgttcattaactcaacccctctctctaaaatatgcc
ctcaagtactcacaagtccccccttcacacacacgtacatacgaaggcag
caaatcctactatggcagtgcgcgtatcggtcgtggccagacggcccggc
gaaacaagtctcgctcctcacaagtaagtctcctctctctctccctccat
gccatccctttcctatcccgttgcctcctctgtctccctcaccaacatct
ccccacatcccaaacacaaatctgtagAACATTCGACACCCTCGCACACA
TTGCCGAGGCCGTGGTGGCCGTGCCAGGGCAAGTGTTGATCGAAGCCGAT
CGGGACAAGGAAGGCGGGCTTGCCTTCATTCGCGGGCACGGCACTTACCA
AGAAGAGGATGACGTTGCACCAGCAGCAGCAATGGAGGAGGAGAGAGAGA
GAAGGGGAGGAAAGGTTCGACTTTGTGCGTGCAATGGCGGGATAATAGAG
CGGGTGAATAAGCTCGTGACAGTGCTCCCACCCAAGACACGGTATCAGgt
agggcgggagggaggaagggaggagggattaagaggggagagagattcga
gagtagagaaggaaaggtaaatcaactgacatacacaattctgtatgcag
caaatacggtgaggcgttcggagaccgcgatcatgaaaattcattttctc
tcgaccacctcccacccacccacccaccctccctccctccctctctccct
ccttccagGGCGCGATCGGTGACCTGGTGGTGGGCCGCATCACCGAGGTG
GGAGCCAAGCGCTGGAAGGTAGACTTAAGAGGGCACAAGgtgagggaggg
agggagggagggtgggagggagggcatagagggggtggatgaggtattcg
atcggagagagtgaatggagggagtgaaggcttacataccaccttgtctt
gtcctcttttcctccctctttctctccctcctcgtcaacagGACGCCGTT
CTCCAGCTCTCCGCCGTCATCCTTCCCGACGGCCTGCAGCGCATCCGGGG
CCACGAGGACGTGCTCCAGATGCGACGGTTCTACCAAGAAAAGGACCTTA
TCAGCGCCGAGGTCCAAAACATCATGgtcagccctgccagcctccctcct
tcctctctctctccgtcttcactactcacctcccccctcctctccctccc
tccctttttttctgtctgcgctcaaccccttccctccctccctccctccc
tccctccctccctccctccctcagAGCGACGGTACTGTTCACCTCCACAC
CCGGACCGTGCGCTACGGCAAACTGCAGAACGGCCTACTCGTCTACGTCC
GCCCCTCCCTCGTGCGGAGAAGCAAGCACCACTTCATCACGCTGCCTCGA
CAGGGGGTGGATGTCATCCTGGgtatgccgatgccttccctccccccctc
cccccttccctccctccctccctccctccatttactaagctctcccttcc
tccctccctccctccctccctccctccctccctcccacccatcctgtctc
cttctcagGCGTCAATGGCTATGTCTGGGTGTCCCGTTCCCTTTCCCTTT
CCAGGGAGGGAGGGTTGGAGGGAGGGAGGGAGGAGGAGCTACAGACGGGA
AAAGCAGAGgcgagtccagtatatctcagtcatcctctcgcctacccctc
cccccctccctccctccctcctcctctgccaccttctccttcttcttctc
ctcacatagaactctgtgcctcatccttcggggacattccctccctccct
ccctccctccctccctccctccctccttccctcagGTCCTCCTCGCCCTC
CAAGGCGCCCACGCTGCCCGTCCCACCACCAGTCAGGAGCGGCTGCAGAT
AGCCCGGGTCCGAAACGCTCTGCTGCTGCTGGATCAGgtgggagggagga
aggttgttcatttaattgacttggaattcctcatacgccctccctccctc
ccttccttcctccctccctccctccctccagGCCTTCCTCTCCATTTCCT
CCGAAACGATCGAGCGCGTATGCGCCGTGTCGGAGGCCCTTGCCCTCCCT
CCCGCACACCTTCTCTCCCCTACCGGCGCTCAGGCCGTGCTGGCAATCCT
CTTGAACGAGGACGAGGGCTGGGGGGAGAAAGGGGAAAAGGACAAGCGAT
TGAAGAGCTAG
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protein sequence of NO27G01460.1

>NO27G01460.1-protein ID=NO27G01460.1-protein|Name=NO27G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1049bp
MAQLGLTGRAGAILLLAIATSNLHGIAEGKTATTILAHPATAARDVILTA
DGSSPSPHSNSILATEPASGLFYLDNIVDEASITMLKTRFNLTMQTASVD
GRRMMDVPIGVVARLGTALQYRRLDSVILHGNDASDDNDKYFKHGQARFQ
LPIQEHKNGFGNHKDHYYQTTLHEKHVVVEGQVGILYLDGDGQMIFTNDE
TKAETSIGIVAGRFIAWNNAAFTHRVVHGPFNIMRRMMGPMTWNNVAQEE
TPKDGIAQIYGGLLSVCGGTSPAQCTNLTDYRCDGNTYVSTSGGNTSWFD
CASFCDDNIGTTLGYGQFDSTNSVCYCGGNTSCPLFTPDPGFIQFMYNSG
DEDCPTLTVSPTQQPSTQPSNSPSGATGAPTSYPTFAPPPPDAPVEILGQ
GFVCGPEVTLVSRRHAMAASGADMERTEREKQAGEEFLSEIGRDYHQQQG
ALDAAWTPETCFAACAQRLGNPPSFVINIYNDGGQQVCTCCRSCDGTRYV
PSAQTFAACGGVAMNLSLTAKASRAKVGARRGGKITYTVRLKNRQAFESG
VGMRIVLPPHMTYVRSKSKPPVYSNVSLSAAGMGRLLLQQGQKWGASAAA
NDTLVDWPVVPMPAKKRRRFIVYMRVKESAPRNAFHWKVEEEAEAVEAEE
EEAEAEEAEEEEEAEENEDEAEEEVMSGPSEDCIGVTPVNSSCPGTAMGH
VTSYGCTGV*TFDTLAHIAEAVVAVPGQVLIEADRDKEGGLAFIRGHGTY
QEEDDVAPAAAMEEERERRGGKVRLCACNGGIIERVNKLVTVLPPKTRYQ
GAIGDLVVGRITEVGAKRWKVDLRGHKDAVLQLSAVILPDGLQRIRGHED
VLQMRRFYQEKDLISAEVQNIMSDGTVHLHTRTVRYGKLQNGLLVYVRPS
LVRRSKHHFITLPRQGVDVILGVNGYVWVSRSLSLSREGGLEGGREEELQ
TGKAEVLLALQGAHAARPTTSQERLQIARVRNALLLLDQAFLSISSETIE
RVCAVSEALALPPAHLLSPTGAQAVLAILLNEDEGWGEKGEKDKRLKS*
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Synonyms
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