NO27G01180, NO27G01180 (gene) Nannochloropsis oceanica

Overview
NameNO27G01180
Unique NameNO27G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1620
Alignment locationchr27:373981..375600 -

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Properties
Property NameValue
DescriptionSplicing arginine serine-rich 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:373981..375600 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR003954RRM_dom_euk
Homology
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: EWM20986.1 (splicing arginine serine-rich 2 [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 2.400e-37
Identity = 75/94 (79.79%), Postives = 87/94 (92.55%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPRE 124
            PP IDGM TLKIDNIRYDC++EDLR+LFKDTG+IGDVYIPRDH SGD+RGFAFVRY+ KEDAE+A+EK+DGTDFKGRDLRV+ A RKRPD+ R+
Sbjct:   23 PPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRD 116
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_024576016.1 (serine arginine-rich splicing factor 2-like isoform x1 [Plasmopara halstedii] >CEG39647.1 serine arginine-rich splicing factor 2-like isoform x1 [Plasmopara halstedii])

HSP 1 Score: 132.1 bits (331), Expect = 1.300e-27
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGGRY 137
            PPN+D M TLK+DN+ +   S++LRDLF   G+IGDVYIPR   S +SRGFAFVR+  K DAE A++ ++G DF+GRDLRV FA ++RPDNPRE    R GGGG RY
Sbjct:    3 PPNVDSMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFLEKRDAEDAIDGMEGLDFQGRDLRVQFAKQRRPDNPREFYA-RSGGGGDRY 108
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ETI33380.1 (hypothetical protein F443_19930 [Phytophthora parasitica P1569] >ETL80385.1 hypothetical protein L917_19113 [Phytophthora parasitica] >ETM33610.1 hypothetical protein L914_19164 [Phytophthora parasitica] >ETO62141.1 hypothetical protein F444_19920 [Phytophthora parasitica P1976] >ETP31392.1 hypothetical protein F442_19739 [Phytophthora parasitica P10297])

HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135
            PPN+D M TLK+DN+ +   S++LRDLF   G+IGDVYIPR   S +SRGFAFVR+  K D            F+GRDLRV FA ++RPDNPRE    RG GGGG
Sbjct:    3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ETK73702.1 (hypothetical protein L915_19388 [Phytophthora parasitica] >ETL27135.1 hypothetical protein L916_19281 [Phytophthora parasitica] >ETP03217.1 hypothetical protein F441_19789 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135
            PPN+D M TLK+DN+ +   S++LRDLF   G+IGDVYIPR   S +SRGFAFVR+  K D            F+GRDLRV FA ++RPDNPRE    RG GGGG
Sbjct:    3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_008913988.1 (hypothetical protein PPTG_17872 [Phytophthora parasitica INRA-310] >ETN00667.1 hypothetical protein PPTG_17872 [Phytophthora parasitica INRA-310])

HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135
            PPN+D M TLK+DN+ +   S++LRDLF   G+IGDVYIPR   S +SRGFAFVR+  K D            F+GRDLRV FA ++RPDNPRE    RG GGGG
Sbjct:    3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_002897249.1 (mannitol dehydrogenase, putative [Phytophthora infestans T30-4] >EEY65386.1 mannitol dehydrogenase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 113.2 bits (282), Expect = 6.300e-22
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGG 133
            PPN+D M TLK+DN+ +   S++LRDLF   G+IGDVYIPR   S +SRGFAFVR+  K D            F+GRDLRV FA ++RPDNPRE   Y  GGG
Sbjct:  350 PPNVDSMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFIEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREF--YSRGGG 450
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_005174917.1 (PREDICTED: serine/arginine-rich splicing factor 2 [Musca domestica])

HSP 1 Score: 112.5 bits (280), Expect = 1.100e-21
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122
            PP IDGM +LK+DN+ Y  + EDLR +F+  GD+GD+YIPRD  + +SRGFAFVR+Y+K DAE+A+E +DG    GR+LRV  A   RP +P
Sbjct:   18 PPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRPTSP 109
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_023294472.1 (serine/arginine-rich splicing factor 2 [Lucilia cuprina] >XP_023294473.1 serine/arginine-rich splicing factor 2 [Lucilia cuprina] >KNC27646.1 hypothetical protein FF38_07089 [Lucilia cuprina])

HSP 1 Score: 112.5 bits (280), Expect = 1.100e-21
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122
            PP IDGM +LK+DN+ Y  + EDLR +F+  GD+GD+YIPRD  + +SRGFAFVR+Y+K DAE+A+E +DG    GR+LRV  A   RP +P
Sbjct:   12 PPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRPTSP 103
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: CBJ29885.1 (splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a [Ectocarpus siliculosus])

HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21
Identity = 47/90 (52.22%), Postives = 73/90 (81.11%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPD 120
            PPNI+GM TLK+DN+ Y+ S +DLR +F+  G++GDVY+PRD R+G+ RGFAFVR+ ++ DA+ A++++DG  F GR+LR+ +A ++RP+
Sbjct:   20 PPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109
[Close]
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ELT97165.1 (hypothetical protein CAPTEDRAFT_18729 [Capitella teleta])

HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 0 
Query:   30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122
            PPNI+GM +LK+DN+ Y  ++EDLR  F+  GD+GDVYIPRD  S +SRGFAFVR+++K DA+ AME +DG    GR+LRV  A   RP +P
Sbjct:    7 PPNIEGMASLKVDNLTYRTTTEDLRRAFEKYGDVGDVYIPRDRFSHESRGFAFVRFFDKRDADDAMESMDGAVMDGRELRVQSAKYGRPSDP 98
The following BLAST results are available for this feature:
BLAST of NO27G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20986.12.400e-3779.79splicing arginine serine-rich 2 [Nannochloropsis g... [more]
XP_024576016.11.300e-2759.81serine arginine-rich splicing factor 2-like isofor... [more]
ETI33380.12.800e-2255.24hypothetical protein F443_19930 [Phytophthora para... [more]
ETK73702.12.800e-2255.24hypothetical protein L915_19388 [Phytophthora para... [more]
XP_008913988.12.800e-2255.24hypothetical protein PPTG_17872 [Phytophthora para... [more]
XP_002897249.16.300e-2254.37mannitol dehydrogenase, putative [Phytophthora inf... [more]
XP_005174917.11.100e-2155.43PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
XP_023294472.11.100e-2155.43serine/arginine-rich splicing factor 2 [Lucilia cu... [more]
CBJ29885.11.400e-2152.22splicing factor, arginine/serine-rich 2 (SC-35), i... [more]
ELT97165.11.400e-2156.52hypothetical protein CAPTEDRAFT_18729 [Capitella t... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01180.1NO27G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546607gene_8706Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100487g3gene9439Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01180.1NO27G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01180 ID=NO27G01180|Name=NO27G01180|organism=Nannochloropsis oceanica|type=gene|length=1620bp
ATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGGCGG
TGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACATCG
ATGGCATGCACgtaagtttcttgaaagtagtgagtaactcgccgaggatg
cgctgcgggaagcaaaatgggcggcgggagtgaatgagggtagacagaaa
ggcatgtggccggccacagtgattatccctgacatgcgacacccgcgcac
ttgccggcaaggcttttggctcagcatgcaatcagggactcttgtgatgg
ttaatattgcgcgtacatctctcaacatcgtctcgtctgcagactgacca
ttcgctcctcctttactccgctctccttccccgcttcctcacatagACGC
TCAAGATCGACAACATCCGCTACGACTGCTCGTCGGAGGACCTACGAGAT
CTCTTCAAGGAgtaagtggcatcttcacgcatgcatacattttttttctt
tcctgatgtatgcccgcagtcttgatctttgtataacttaggttcaacca
gaagatgttgtatgtttgtggttcaataagcgctttaaaagcccacccca
agactcacttgttcaatcgtttgcttcatcttatctatccacaagaagat
aatggatgaacacgttaaaaagatgacgtgatggtggtttggtggtcgtg
tctttggaaagaggagggagggagaaaaatcagggataggtgacattctg
tcagcagcagcagcggcagcagtagcaacagcagcagcagcagcatcaag
aagtacgctagcaagcgagcctgtccctgcacctttttttgttgctaagc
aatgtacatgaatgatgtgactgggctgcccttccctgatgcttcacgtt
cccgtttcccgtgtttcctgtcctctggctctgcccctgtccgacctgcc
ctgcctgccatagacctgccctgcctgccatacctgtgtttttaccttcc
atgcgacaattagtgaggctgatggccagcgccttttcgtgagtctgctt
tcgtgtacccctcatggccgctaccatcattctttcctgttctgtcctga
ccacccacgttaatttgatagcctgcggctgcccctgcctgcgtgagaga
cgtgcgcgcgtgttcgcagcggctcctcaagttcctgcccccttgctgct
gacccaggcatgctgacccgactcctgacgtttccttacaacacaccaac
cctcttaccacaaacaaacaaacaaaaccaactgctgccgccctcttctt
tcttcaactcctcctcccctctccgccatctctcttcttccctctccacc
tccttctcatccccgttcgttttgtttggcagCACTGGAGATATTGGGGA
CGTCTACATCCCTCGCGACCACCGCTCAGGCGACTCCCGCGGGTTCGCAT
TCGTGCGCTACTACAACAAGGAGGACGCCGAGAAGGCCATGGAGAAGCTC
GACGGGACCGACTTCAAGGGCCGGGACCTGCGAGTGGCGTTTGCAAATCG
CAAGAGGCCCGACAATCCCCGGGAGATCGGAGGCTACCGAGGGGGAGGAG
GGGGAGGACGCTACGGGTGA
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protein sequence of NO27G01180.1

>NO27G01180.1-protein ID=NO27G01180.1-protein|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MSDYGDDNAPPPPPSGGGGGGSGGGERKGPPNIDGMHTLKIDNIRYDCSS
EDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDG
TDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGGRYG*
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Synonyms
Publications