NO27G01180, NO27G01180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G01180 vs. NCBI_GenBank
Match: EWM20986.1 (splicing arginine serine-rich 2 [Nannochloropsis gaditana]) HSP 1 Score: 164.5 bits (415), Expect = 2.400e-37 Identity = 75/94 (79.79%), Postives = 87/94 (92.55%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPRE 124 PP IDGM TLKIDNIRYDC++EDLR+LFKDTG+IGDVYIPRDH SGD+RGFAFVRY+ KEDAE+A+EK+DGTDFKGRDLRV+ A RKRPD+ R+ Sbjct: 23 PPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRD 116
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_024576016.1 (serine arginine-rich splicing factor 2-like isoform x1 [Plasmopara halstedii] >CEG39647.1 serine arginine-rich splicing factor 2-like isoform x1 [Plasmopara halstedii]) HSP 1 Score: 132.1 bits (331), Expect = 1.300e-27 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGGRY 137 PPN+D M TLK+DN+ + S++LRDLF G+IGDVYIPR S +SRGFAFVR+ K DAE A++ ++G DF+GRDLRV FA ++RPDNPRE R GGGG RY Sbjct: 3 PPNVDSMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFLEKRDAEDAIDGMEGLDFQGRDLRVQFAKQRRPDNPREFYA-RSGGGGDRY 108
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ETI33380.1 (hypothetical protein F443_19930 [Phytophthora parasitica P1569] >ETL80385.1 hypothetical protein L917_19113 [Phytophthora parasitica] >ETM33610.1 hypothetical protein L914_19164 [Phytophthora parasitica] >ETO62141.1 hypothetical protein F444_19920 [Phytophthora parasitica P1976] >ETP31392.1 hypothetical protein F442_19739 [Phytophthora parasitica P10297]) HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22 Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135 PPN+D M TLK+DN+ + S++LRDLF G+IGDVYIPR S +SRGFAFVR+ K D F+GRDLRV FA ++RPDNPRE RG GGGG Sbjct: 3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ETK73702.1 (hypothetical protein L915_19388 [Phytophthora parasitica] >ETL27135.1 hypothetical protein L916_19281 [Phytophthora parasitica] >ETP03217.1 hypothetical protein F441_19789 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22 Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135 PPN+D M TLK+DN+ + S++LRDLF G+IGDVYIPR S +SRGFAFVR+ K D F+GRDLRV FA ++RPDNPRE RG GGGG Sbjct: 3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_008913988.1 (hypothetical protein PPTG_17872 [Phytophthora parasitica INRA-310] >ETN00667.1 hypothetical protein PPTG_17872 [Phytophthora parasitica INRA-310]) HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22 Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGG 135 PPN+D M TLK+DN+ + S++LRDLF G+IGDVYIPR S +SRGFAFVR+ K D F+GRDLRV FA ++RPDNPRE RG GGGG Sbjct: 3 PPNVDNMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREFYS-RGSGGGG 106
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_002897249.1 (mannitol dehydrogenase, putative [Phytophthora infestans T30-4] >EEY65386.1 mannitol dehydrogenase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 113.2 bits (282), Expect = 6.300e-22 Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPREIGGYRGGGG 133 PPN+D M TLK+DN+ + S++LRDLF G+IGDVYIPR S +SRGFAFVR+ K D F+GRDLRV FA ++RPDNPRE Y GGG Sbjct: 350 PPNVDSMFTLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFIEKRDXXXXXXXXXXXXFQGRDLRVQFAKQRRPDNPREF--YSRGGG 450
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_005174917.1 (PREDICTED: serine/arginine-rich splicing factor 2 [Musca domestica]) HSP 1 Score: 112.5 bits (280), Expect = 1.100e-21 Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122 PP IDGM +LK+DN+ Y + EDLR +F+ GD+GD+YIPRD + +SRGFAFVR+Y+K DAE+A+E +DG GR+LRV A RP +P Sbjct: 18 PPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRPTSP 109
BLAST of NO27G01180 vs. NCBI_GenBank
Match: XP_023294472.1 (serine/arginine-rich splicing factor 2 [Lucilia cuprina] >XP_023294473.1 serine/arginine-rich splicing factor 2 [Lucilia cuprina] >KNC27646.1 hypothetical protein FF38_07089 [Lucilia cuprina]) HSP 1 Score: 112.5 bits (280), Expect = 1.100e-21 Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122 PP IDGM +LK+DN+ Y + EDLR +F+ GD+GD+YIPRD + +SRGFAFVR+Y+K DAE+A+E +DG GR+LRV A RP +P Sbjct: 12 PPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRPTSP 103
BLAST of NO27G01180 vs. NCBI_GenBank
Match: CBJ29885.1 (splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a [Ectocarpus siliculosus]) HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21 Identity = 47/90 (52.22%), Postives = 73/90 (81.11%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPD 120 PPNI+GM TLK+DN+ Y+ S +DLR +F+ G++GDVY+PRD R+G+ RGFAFVR+ ++ DA+ A++++DG F GR+LR+ +A ++RP+ Sbjct: 20 PPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109
BLAST of NO27G01180 vs. NCBI_GenBank
Match: ELT97165.1 (hypothetical protein CAPTEDRAFT_18729 [Capitella teleta]) HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21 Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 0 Query: 30 PPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNP 122 PPNI+GM +LK+DN+ Y ++EDLR F+ GD+GDVYIPRD S +SRGFAFVR+++K DA+ AME +DG GR+LRV A RP +P Sbjct: 7 PPNIEGMASLKVDNLTYRTTTEDLRRAFEKYGDVGDVYIPRDRFSHESRGFAFVRFFDKRDADDAMESMDGAVMDGRELRVQSAKYGRPSDP 98 The following BLAST results are available for this feature:
BLAST of NO27G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G01180 ID=NO27G01180|Name=NO27G01180|organism=Nannochloropsis oceanica|type=gene|length=1620bpback to top protein sequence of NO27G01180.1 >NO27G01180.1-protein ID=NO27G01180.1-protein|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bpback to top Synonyms
Publications
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