NO27G01180.1, NO27G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01180.1
Unique NameNO27G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr27:373981..375600 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:373981..375600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01180.1 vs.
Match: EWM20986.1 (splicing arginine serine-rich 2 [Nannochloropsis gaditana])

HSP 1 Score: 172.6 bits (436), Expect = 8.800e-40
Identity = 94/149 (63.09%), Postives = 109/149 (73.15%), Query Frame = 0 
Query:    7 DNAPPPPPSGGGGGGSGGGERKGPPNIDGMHTLKIDNIRYDCSSEDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDGTDFKGRDLRVAFANRKRPDNPRE---------------------IGGYRGGGGGG 135
            DN     P+  GGGG+GG   +GPP IDGM TLKIDNIRYDC++EDLR+LFKDTG+IGDVYIPRDH SGD+RGFAFVRY+ KEDAE+A+EK+DGTDFKGRDLRV+ A RKRPD+ R+                      GGY GGGGGG
Sbjct:    3 DNGENGEPNRDGGGGAGG---RGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGG 148
The following BLAST results are available for this feature:
BLAST of NO27G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20986.18.800e-4063.09splicing arginine serine-rich 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01180NO27G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01180.1NO27G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01180.1.cds1NO27G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01180.1.cds2NO27G01180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01180.1.cds3NO27G01180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01180.1 ID=NO27G01180.1|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGGCGG
TGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACATCG
ATGGCATGCACACGCTCAAGATCGACAACATCCGCTACGACTGCTCGTCG
GAGGACCTACGAGATCTCTTCAAGGACACTGGAGATATTGGGGACGTCTA
CATCCCTCGCGACCACCGCTCAGGCGACTCCCGCGGGTTCGCATTCGTGC
GCTACTACAACAAGGAGGACGCCGAGAAGGCCATGGAGAAGCTCGACGGG
ACCGACTTCAAGGGCCGGGACCTGCGAGTGGCGTTTGCAAATCGCAAGAG
GCCCGACAATCCCCGGGAGATCGGAGGCTACCGAGGGGGAGGAGGGGGAG
GACGCTACGGGTGA
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protein sequence of NO27G01180.1

>NO27G01180.1-protein ID=NO27G01180.1-protein|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MSDYGDDNAPPPPPSGGGGGGSGGGERKGPPNIDGMHTLKIDNIRYDCSS
EDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDG
TDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGGRYG*
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mRNA from alignment at chr27:373981..375600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01180.1 ID=NO27G01180.1|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp|location=Sequence derived from alignment at chr27:373981..375600- (Nannochloropsis oceanica)
ATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGGCGG
TGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACATCG
ATGGCATGCACGTAAGTTTCTTGAAAGTAGTGAGTAACTCGCCGAGGATG
CGCTGCGGGAAGCAAAATGGGCGGCGGGAGTGAATGAGGGTAGACAGAAA
GGCATGTGGCCGGCCACAGTGATTATCCCTGACATGCGACACCCGCGCAC
TTGCCGGCAAGGCTTTTGGCTCAGCATGCAATCAGGGACTCTTGTGATGG
TTAATATTGCGCGTACATCTCTCAACATCGTCTCGTCTGCAGACTGACCA
TTCGCTCCTCCTTTACTCCGCTCTCCTTCCCCGCTTCCTCACATAGACGC
TCAAGATCGACAACATCCGCTACGACTGCTCGTCGGAGGACCTACGAGAT
CTCTTCAAGGAGTAAGTGGCATCTTCACGCATGCATACATTTTTTTTCTT
TCCTGATGTATGCCCGCAGTCTTGATCTTTGTATAACTTAGGTTCAACCA
GAAGATGTTGTATGTTTGTGGTTCAATAAGCGCTTTAAAAGCCCACCCCA
AGACTCACTTGTTCAATCGTTTGCTTCATCTTATCTATCCACAAGAAGAT
AATGGATGAACACGTTAAAAAGATGACGTGATGGTGGTTTGGTGGTCGTG
TCTTTGGAAAGAGGAGGGAGGGAGAAAAATCAGGGATAGGTGACATTCTG
TCAGCAGCAGCAGCGGCAGCAGTAGCAACAGCAGCAGCAGCAGCATCAAG
AAGTACGCTAGCAAGCGAGCCTGTCCCTGCACCTTTTTTTGTTGCTAAGC
AATGTACATGAATGATGTGACTGGGCTGCCCTTCCCTGATGCTTCACGTT
CCCGTTTCCCGTGTTTCCTGTCCTCTGGCTCTGCCCCTGTCCGACCTGCC
CTGCCTGCCATAGACCTGCCCTGCCTGCCATACCTGTGTTTTTACCTTCC
ATGCGACAATTAGTGAGGCTGATGGCCAGCGCCTTTTCGTGAGTCTGCTT
TCGTGTACCCCTCATGGCCGCTACCATCATTCTTTCCTGTTCTGTCCTGA
CCACCCACGTTAATTTGATAGCCTGCGGCTGCCCCTGCCTGCGTGAGAGA
CGTGCGCGCGTGTTCGCAGCGGCTCCTCAAGTTCCTGCCCCCTTGCTGCT
GACCCAGGCATGCTGACCCGACTCCTGACGTTTCCTTACAACACACCAAC
CCTCTTACCACAAACAAACAAACAAAACCAACTGCTGCCGCCCTCTTCTT
TCTTCAACTCCTCCTCCCCTCTCCGCCATCTCTCTTCTTCCCTCTCCACC
TCCTTCTCATCCCCGTTCGTTTTGTTTGGCAGCACTGGAGATATTGGGGA
CGTCTACATCCCTCGCGACCACCGCTCAGGCGACTCCCGCGGGTTCGCAT
TCGTGCGCTACTACAACAAGGAGGACGCCGAGAAGGCCATGGAGAAGCTC
GACGGGACCGACTTCAAGGGCCGGGACCTGCGAGTGGCGTTTGCAAATCG
CAAGAGGCCCGACAATCCCCGGGAGATCGGAGGCTACCGAGGGGGAGGAG
GGGGAGGACGCTACGGGTGA
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Coding sequence (CDS) from alignment at chr27:373981..375600-

>NO27G01180.1 ID=NO27G01180.1|Name=NO27G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr27:373981..375600- (Nannochloropsis oceanica)
ATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGGCGG
TGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACATCG
ATGGCATGCACACGCTCAAGATCGACAACATCCGCTACGACTGCTCGTCG
GAGGACCTACGAGATCTCTTCAAGGACACTGGAGATATTGGGGACGTCTA
CATCCCTCGCGACCACCGCTCAGGCGACTCCCGCGGGTTCGCATTCGTGC
GCTACTACAACAAGGAGGACGCCGAGAAGGCCATGGAGAAGCTCGACGGG
ACCGACTTCAAGGGCCGGGACCTGCGAGTGGCGTTTGCAAATCGCAAGAG
GCCCGACAATCCCCGGGAGATCGGAGGCTACCGAGGGGGAGGAGGGGGAG
GACGCTACGGGTGA
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Synonyms
Publications