NO27G01110, NO27G01110 (gene) Nannochloropsis oceanica

Overview
NameNO27G01110
Unique NameNO27G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr27:363358..364526 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:363358..364526 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G01110 vs. NCBI_GenBank
Match: EWM20989.1 (hypothetical protein Naga_100211g7 [Nannochloropsis gaditana])

HSP 1 Score: 289.7 bits (740), Expect = 1.200e-74
Identity = 181/331 (54.68%), Postives = 205/331 (61.93%), Query Frame = 0 
Query:   15 STTTSPTCGFVLSPVPTASSLQLAPCSRRGQLRVSTACWAQPQQQPPQQARPGSVSADGKAQKASFYKRPSKAIEMGGGFFIPGLEGYKLRLATAVLVLVLLALNRFPGYAPPISQSTSEIIGAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGVEEECFGLVARDPQLEDDVRWAGYALDENLGCPSVAVLHGEQGLVYYRRR---SSKDATSSSSL-ELATALLQTLPVGTRRAIGMGDALAALGGVAGNSGAQLAQVLGMAKAEGAVVVRIGERGLLLVAPPVGGIMRDQAVWVERAAALLEGSGRG 342
            S TT+   GF++ P  +     L    R     + T  W +  + PP   R G VSADGKAQK+SFYKRPSKAIEMGGGFFIPGLEGYKLRLATA+LVL+LLALNR+PGY P  SQ TSE IGAGAAV                                             GG+EEE  G       +EDDVRW GYALDENL CP+VA+L  E+GL+YY      SS    SSS L ELA AL Q LP  +RRA+GM DALA+LGG  G +G  LAQVLGM+K EGAVVVR+G R +L VAPP GGIMRDQAVWVERAAALLE SG G
Sbjct:   18 SRTTA--AGFIIPPF-SLDPPNLQSLRRHESRSLRTLRWVESPRPPP---RSGGVSADGKAQKSSFYKRPSKAIEMGGGFFIPGLEGYKLRLATALLVLLLLALNRYPGYTPAASQLTSEAIGAGAAV------ILLAQALIEKLITEAGVAQQEEEDNGGLKPKIGGRSGRTGGMEEEYLG-PGPGSAMEDDVRWVGYALDENLNCPAVALLDSERGLLYYXXXXXISSPFPPSSSPLKELALALAQALPAQSRRAVGMSDALASLGGAGGTTGMGLAQVLGMSKVEGAVVVRVGPRAVLAVAPPAGGIMRDQAVWVERAAALLEASGLG 335
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BLAST of NO27G01110 vs. NCBI_GenBank
Match: XP_005836453.1 (hypothetical protein GUITHDRAFT_136133 [Guillardia theta CCMP2712] >EKX49473.1 hypothetical protein GUITHDRAFT_136133 [Guillardia theta CCMP2712])

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0 
Query:   77 KASFYKRPSKAIEMGGGFFIPGLEGYKLRLATAVLVLVLLALNR--FPGYAPPISQSTSEII 137
            +  FY RPSKA+E GGGF++PGLEGYKL+LA +VL   LLA+NR   PGY P I+Q TSE +
Sbjct:   50 RKGFYVRPSKALEKGGGFYVPGLEGYKLKLAVSVLAFSLLAINRVLLPGYQPTINQQTSEAV 111
The following BLAST results are available for this feature:
BLAST of NO27G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20989.11.200e-7454.68hypothetical protein Naga_100211g7 [Nannochloropsi... [more]
XP_005836453.11.100e-1161.29hypothetical protein GUITHDRAFT_136133 [Guillardia... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01110.1NO27G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603655gene_8700Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100211g7gene9434Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01110.1NO27G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01110 ID=NO27G01110|Name=NO27G01110|organism=Nannochloropsis oceanica|type=gene|length=1169bp
ACAGCAACACCACACACGCAAGCCTACTTTTTCAATTGCACTCGCGTGTC
AAAGCCCGACCCAAGGCCTTCCTTCAGGAGCAATGTCGCCTCCTCCTCAT
CACTCCCTGTGTGTCACCTTTACCTCGACAACAACCTCGCCCACTTGCGG
CTTTGTCCTTTCCCCGGTTCCCACCGCGTCGTCACTTCAATTGGCACCAT
GCTCGCGCAGAGGACAGCTTCGCGTTTCAACTGCGTGTTGGGCGCAACCA
CAACAACAGCCACCGCAGCAAGCACGCCCGGGCAGCGTCAGCGCCGATGG
CAAAGCGCAAAAAGCCAGCTTCTACAAACGTCCCTCTAAGGCCATTGAGA
TGGGTGGCGGCTTCTTTATCCCCGGCCTTGAAGGGTATAAGCTCCGATTG
GCCACGGCTGTCCTCGTGTTGGTTCTGCTGGCCTTGAATCGCTTTCCCGG
ATACGCCCCCCCAATCTCCCAAAGCACGAGTGAGATAATTGGCGCCGGCG
CGGCCGTCATCCTCCTAGCCCAATCCCTCATTGAGAAGCTCATTACCGAT
TCGGGCTCTGCACCAGAGGAGGATGATGATAGCGACGACGGCAGGGTCAG
CACAAGCAGCACAGGCAGTGGCAGCGGTGGCAGCAGCAGGGTGGGTGGAG
TAGAGGAGGAATGCTTCGGACTGGTAGCACGAGACCCCCAATTGGAAGAC
GACGTCCGATGGGCTGGCTATGCTTTAGATGAAAACCTAGGCTGTCCCTC
CGTGGCCGTTCTACACGGGGAGCAAGGCTTGGTGTACTACCGTCGGCGGT
CGAGCAAAGATGCTACCTCTTCTTCATCTCTCGAGCTCGCCACGGCCTTG
CTGCAGACCTTACCGGTGGGGACCCGCCGAGCCATCGGGATGGGAGACGC
CTTAGCAGCACTAGGAGGGGTGGCAGGAAATAGCGGAGCACAACTGGCGC
AGGTTTTGGGGATGGCAAAGGCTGAGGGTGCGGTGGTGGTGAGGATTGGA
GAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGTGGGAGGGATAATGAGAGA
TCAGGCCGTGTGGGTCGAACGGGCAGCGGCGTTACTCGAGGGGTCGGGTC
GCGGAAGTGAAAGGTTCTAGATGGACGGAAAAGCAACCAAATAAATGAAT
AAATTAGAATGAGGTTGAA
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protein sequence of NO27G01110.1

>NO27G01110.1-protein ID=NO27G01110.1-protein|Name=NO27G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MSPPPHHSLCVTFTSTTTSPTCGFVLSPVPTASSLQLAPCSRRGQLRVST
ACWAQPQQQPPQQARPGSVSADGKAQKASFYKRPSKAIEMGGGFFIPGLE
GYKLRLATAVLVLVLLALNRFPGYAPPISQSTSEIIGAGAAVILLAQSLI
EKLITDSGSAPEEDDDSDDGRVSTSSTGSGSGGSSRVGGVEEECFGLVAR
DPQLEDDVRWAGYALDENLGCPSVAVLHGEQGLVYYRRRSSKDATSSSSL
ELATALLQTLPVGTRRAIGMGDALAALGGVAGNSGAQLAQVLGMAKAEGA
VVVRIGERGLLLVAPPVGGIMRDQAVWVERAAALLEGSGRGSERF*
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Synonyms
Publications