NO27G01110.1, NO27G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01110.1
Unique NameNO27G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr27:363358..364526 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:363358..364526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01110.1 vs.
Match: EWM20989.1 (hypothetical protein Naga_100211g7 [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 3.000e-89
Identity = 205/335 (61.19%), Postives = 237/335 (70.75%), Query Frame = 0 
Query:   15 STTTSPTCGFVLSPV----PTASSLQLAPCSRRGQLRVSTACWAQPQQQPPQQARPGSVSADGKAQKASFYKRPSKAIEMGGGFFIPGLEGYKLRLATAVLVLVLLALNRFPGYAPPISQSTSEIIGAGAAVILLAQSLIEKLITDSGSAPEEDDDSDDGRVSTSSTGSGSGGSSRVGGVEEECFGLVARDPQLEDDVRWAGYALDENLGCPSVAVLHGEQGLVYYRRR---SSKDATSSSSL-ELATALLQTLPVGTRRAIGMGDALAALGGVAGNSGAQLAQVLGMAKAEGAVVVRIGERGLLLVAPPVGGIMRDQAVWVERAAALLEGSGRG 342
            S TT+   GF++ P     P   SL+     R     + T  W +  + PP   R G VSADGKAQK+SFYKRPSKAIEMGGGFFIPGLEGYKLRLATA+LVL+LLALNR+PGY P  SQ TSE IGAGAAVILLAQ+LIEKLIT++G A +E++D+   +          G S R GG+EEE  G       +EDDVRW GYALDENL CP+VA+L  E+GL+YYRRR   SS    SSS L ELA AL Q LP  +RRA+GM DALA+LGG  G +G  LAQVLGM+K EGAVVVR+G R +L VAPP GGIMRDQAVWVERAAALLE SG G
Sbjct:   18 SRTTA--AGFIIPPFSLDPPNLQSLR-----RHESRSLRTLRWVESPRPPP---RSGGVSADGKAQKSSFYKRPSKAIEMGGGFFIPGLEGYKLRLATALLVLLLLALNRYPGYTPAASQLTSEAIGAGAAVILLAQALIEKLITEAGVAQQEEEDNGGLKPKI------GGRSGRTGGMEEEYLG-PGPGSAMEDDVRWVGYALDENLNCPAVALLDSERGLLYYRRRRRISSPFPPSSSPLKELALALAQALPAQSRRAVGMSDALASLGGAGGTTGMGLAQVLGMSKVEGAVVVRVGPRAVLAVAPPAGGIMRDQAVWVERAAALLEASGLG 335
The following BLAST results are available for this feature:
BLAST of NO27G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20989.13.000e-8961.19hypothetical protein Naga_100211g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01110NO27G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01110.1NO27G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01110.1.cds1NO27G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01110.1 ID=NO27G01110.1|Name=NO27G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
ACAGCAACACCACACACGCAAGCCTACTTTTTCAATTGCACTCGCGTGTC
AAAGCCCGACCCAAGGCCTTCCTTCAGGAGCAATGTCGCCTCCTCCTCAT
CACTCCCTGTGTGTCACCTTTACCTCGACAACAACCTCGCCCACTTGCGG
CTTTGTCCTTTCCCCGGTTCCCACCGCGTCGTCACTTCAATTGGCACCAT
GCTCGCGCAGAGGACAGCTTCGCGTTTCAACTGCGTGTTGGGCGCAACCA
CAACAACAGCCACCGCAGCAAGCACGCCCGGGCAGCGTCAGCGCCGATGG
CAAAGCGCAAAAAGCCAGCTTCTACAAACGTCCCTCTAAGGCCATTGAGA
TGGGTGGCGGCTTCTTTATCCCCGGCCTTGAAGGGTATAAGCTCCGATTG
GCCACGGCTGTCCTCGTGTTGGTTCTGCTGGCCTTGAATCGCTTTCCCGG
ATACGCCCCCCCAATCTCCCAAAGCACGAGTGAGATAATTGGCGCCGGCG
CGGCCGTCATCCTCCTAGCCCAATCCCTCATTGAGAAGCTCATTACCGAT
TCGGGCTCTGCACCAGAGGAGGATGATGATAGCGACGACGGCAGGGTCAG
CACAAGCAGCACAGGCAGTGGCAGCGGTGGCAGCAGCAGGGTGGGTGGAG
TAGAGGAGGAATGCTTCGGACTGGTAGCACGAGACCCCCAATTGGAAGAC
GACGTCCGATGGGCTGGCTATGCTTTAGATGAAAACCTAGGCTGTCCCTC
CGTGGCCGTTCTACACGGGGAGCAAGGCTTGGTGTACTACCGTCGGCGGT
CGAGCAAAGATGCTACCTCTTCTTCATCTCTCGAGCTCGCCACGGCCTTG
CTGCAGACCTTACCGGTGGGGACCCGCCGAGCCATCGGGATGGGAGACGC
CTTAGCAGCACTAGGAGGGGTGGCAGGAAATAGCGGAGCACAACTGGCGC
AGGTTTTGGGGATGGCAAAGGCTGAGGGTGCGGTGGTGGTGAGGATTGGA
GAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGTGGGAGGGATAATGAGAGA
TCAGGCCGTGTGGGTCGAACGGGCAGCGGCGTTACTCGAGGGGTCGGGTC
GCGGAAGTGAAAGGTTCTAGATGGACGGAAAAGCAACCAAATAAATGAAT
AAATTAGAATGAGGTTGAA
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protein sequence of NO27G01110.1

>NO27G01110.1-protein ID=NO27G01110.1-protein|Name=NO27G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MSPPPHHSLCVTFTSTTTSPTCGFVLSPVPTASSLQLAPCSRRGQLRVST
ACWAQPQQQPPQQARPGSVSADGKAQKASFYKRPSKAIEMGGGFFIPGLE
GYKLRLATAVLVLVLLALNRFPGYAPPISQSTSEIIGAGAAVILLAQSLI
EKLITDSGSAPEEDDDSDDGRVSTSSTGSGSGGSSRVGGVEEECFGLVAR
DPQLEDDVRWAGYALDENLGCPSVAVLHGEQGLVYYRRRSSKDATSSSSL
ELATALLQTLPVGTRRAIGMGDALAALGGVAGNSGAQLAQVLGMAKAEGA
VVVRIGERGLLLVAPPVGGIMRDQAVWVERAAALLEGSGRGSERF*
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mRNA from alignment at chr27:363358..364526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01110.1 ID=NO27G01110.1|Name=NO27G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp|location=Sequence derived from alignment at chr27:363358..364526- (Nannochloropsis oceanica)
ACAGCAACACCACACACGCAAGCCTACTTTTTCAATTGCACTCGCGTGTC
AAAGCCCGACCCAAGGCCTTCCTTCAGGAGCAATGTCGCCTCCTCCTCAT
CACTCCCTGTGTGTCACCTTTACCTCGACAACAACCTCGCCCACTTGCGG
CTTTGTCCTTTCCCCGGTTCCCACCGCGTCGTCACTTCAATTGGCACCAT
GCTCGCGCAGAGGACAGCTTCGCGTTTCAACTGCGTGTTGGGCGCAACCA
CAACAACAGCCACCGCAGCAAGCACGCCCGGGCAGCGTCAGCGCCGATGG
CAAAGCGCAAAAAGCCAGCTTCTACAAACGTCCCTCTAAGGCCATTGAGA
TGGGTGGCGGCTTCTTTATCCCCGGCCTTGAAGGGTATAAGCTCCGATTG
GCCACGGCTGTCCTCGTGTTGGTTCTGCTGGCCTTGAATCGCTTTCCCGG
ATACGCCCCCCCAATCTCCCAAAGCACGAGTGAGATAATTGGCGCCGGCG
CGGCCGTCATCCTCCTAGCCCAATCCCTCATTGAGAAGCTCATTACCGAT
TCGGGCTCTGCACCAGAGGAGGATGATGATAGCGACGACGGCAGGGTCAG
CACAAGCAGCACAGGCAGTGGCAGCGGTGGCAGCAGCAGGGTGGGTGGAG
TAGAGGAGGAATGCTTCGGACTGGTAGCACGAGACCCCCAATTGGAAGAC
GACGTCCGATGGGCTGGCTATGCTTTAGATGAAAACCTAGGCTGTCCCTC
CGTGGCCGTTCTACACGGGGAGCAAGGCTTGGTGTACTACCGTCGGCGGT
CGAGCAAAGATGCTACCTCTTCTTCATCTCTCGAGCTCGCCACGGCCTTG
CTGCAGACCTTACCGGTGGGGACCCGCCGAGCCATCGGGATGGGAGACGC
CTTAGCAGCACTAGGAGGGGTGGCAGGAAATAGCGGAGCACAACTGGCGC
AGGTTTTGGGGATGGCAAAGGCTGAGGGTGCGGTGGTGGTGAGGATTGGA
GAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGTGGGAGGGATAATGAGAGA
TCAGGCCGTGTGGGTCGAACGGGCAGCGGCGTTACTCGAGGGGTCGGGTC
GCGGAAGTGAAAGGTTCTAGATGGACGGAAAAGCAACCAAATAAATGAAT
AAATTAGAATGAGGTTGAA
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Coding sequence (CDS) from alignment at chr27:363358..364526-

>NO27G01110.1 ID=NO27G01110.1|Name=NO27G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr27:363358..364526- (Nannochloropsis oceanica)
ATGTCGCCTCCTCCTCATCACTCCCTGTGTGTCACCTTTACCTCGACAAC
AACCTCGCCCACTTGCGGCTTTGTCCTTTCCCCGGTTCCCACCGCGTCGT
CACTTCAATTGGCACCATGCTCGCGCAGAGGACAGCTTCGCGTTTCAACT
GCGTGTTGGGCGCAACCACAACAACAGCCACCGCAGCAAGCACGCCCGGG
CAGCGTCAGCGCCGATGGCAAAGCGCAAAAAGCCAGCTTCTACAAACGTC
CCTCTAAGGCCATTGAGATGGGTGGCGGCTTCTTTATCCCCGGCCTTGAA
GGGTATAAGCTCCGATTGGCCACGGCTGTCCTCGTGTTGGTTCTGCTGGC
CTTGAATCGCTTTCCCGGATACGCCCCCCCAATCTCCCAAAGCACGAGTG
AGATAATTGGCGCCGGCGCGGCCGTCATCCTCCTAGCCCAATCCCTCATT
GAGAAGCTCATTACCGATTCGGGCTCTGCACCAGAGGAGGATGATGATAG
CGACGACGGCAGGGTCAGCACAAGCAGCACAGGCAGTGGCAGCGGTGGCA
GCAGCAGGGTGGGTGGAGTAGAGGAGGAATGCTTCGGACTGGTAGCACGA
GACCCCCAATTGGAAGACGACGTCCGATGGGCTGGCTATGCTTTAGATGA
AAACCTAGGCTGTCCCTCCGTGGCCGTTCTACACGGGGAGCAAGGCTTGG
TGTACTACCGTCGGCGGTCGAGCAAAGATGCTACCTCTTCTTCATCTCTC
GAGCTCGCCACGGCCTTGCTGCAGACCTTACCGGTGGGGACCCGCCGAGC
CATCGGGATGGGAGACGCCTTAGCAGCACTAGGAGGGGTGGCAGGAAATA
GCGGAGCACAACTGGCGCAGGTTTTGGGGATGGCAAAGGCTGAGGGTGCG
GTGGTGGTGAGGATTGGAGAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGT
GGGAGGGATAATGAGAGATCAGGCCGTGTGGGTCGAACGGGCAGCGGCGT
TACTCGAGGGGTCGGGTCGCGGAAGTGAAAGGTTCTAG
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Synonyms
Publications