NO27G01090, NO27G01090 (gene) Nannochloropsis oceanica

Overview
NameNO27G01090
Unique NameNO27G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr27:353664..355211 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA double-strand break repair and VJ recombination XRCC4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:353664..355211 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006302double-strand break repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO27G01090 vs. NCBI_GenBank
Match: EWM20991.1 (DNA double-strand break repair and VJ recombination XRCC4 [Nannochloropsis gaditana])

HSP 1 Score: 112.1 bits (279), Expect = 5.300e-21
Identity = 100/248 (40.32%), Postives = 137/248 (55.24%), Query Frame = 0 
Query:    1 MASSSSGAAAPIKVDPL-VLSYNEQSSFFPVAANVTTDT-VPLCLFL-----DKQGCRQKEDGKEEAFFIVQVHHEQGDAQKKEPQVWTATIPAGETAGK----MVTLAELLRSPETVTTLEVISSLSTQKEDKLAAGATLTIKQVVEKGKKVLLKPTVLRATDAPVGSLAMALSRTATQLAHAHCALLAAERLNSLYQEEHEKMQGLLMMEVANKDRVQEELMFKFNLLLNTKRAKIAELLQRVGEK 238
            +  + +G   P+ VD L   S +  SS FP  AN+  +T   LCL +     D QG      G  E+ F++Q H  + DA   EP+VW A +  GE  G+    +V L  +LR P     L+V +       ++     +L+IK+ VEKGKK++L+ T L    +P  SL  ALS  A QLA A   L  AER  ++ + EHEKMQ +L M VA+KD VQ EL+ KFNL+LN KRAKIAEL +R+  K
Sbjct:   18 LGHAENGWLPPMDVDSLQQQSPDRSSSPFPATANLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGES-FLLQAH--RLDAGGGEPRVWGAVV--GEDGGRRRRELVALGGVLRRPVGGRALDVAA------VEEADGALSLSIKERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAEREKAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQERLRSK 254
The following BLAST results are available for this feature:
BLAST of NO27G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20991.15.300e-2140.32DNA double-strand break repair and VJ recombinatio... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005116NSK005116Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01090.1NO27G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100211g4gene9433Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01090.1NO27G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01090 ID=NO27G01090|Name=NO27G01090|organism=Nannochloropsis oceanica|type=gene|length=1548bp
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG
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protein sequence of NO27G01090.1

>NO27G01090.1-protein ID=NO27G01090.1-protein|Name=NO27G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MASSSSGAAAPIKVDPLVLSYNEQSSFFPVAANVTTDTVPLCLFLDKQGC
RQKEDGKEEAFFIVQVHHEQGDAQKKEPQVWTATIPAGETAGKMVTLAEL
LRSPETVTTLEVISSLSTQKEDKLAAGATLTIKQVVEKGKKVLLKPTVLR
ATDAPVGSLAMALSRTATQLAHAHCALLAAERLNSLYQEEHEKMQGLLMM
EVANKDRVQEELMFKFNLLLNTKRAKIAELLQRVGEKERESEMTDEEEGG
GQEEEEEGQGGGAGGASGGWKGAKAKLRAQRKLLCDAREEGGNEGEEEEN
SHKKMQAKRRRLSAAAASGTGRGRSKSNRSSLALPLKKVKVEGRSEEDRE
GGMGSLLSAVKGTKEVLGGIDALLRETKKSGASSSSSSKKQQQQRQLKEK
RKQEKRGLDSSSSDYNGVDDSCSSSGDDGDDLVAYSAKGKSEEGGEGIHS
DGSGDDGGGGRGGRPATRGSERDDDFGRKEKGRGGGRGGGGGGGGVAAAM
NPVLRRGLMDDSDSD*
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Synonyms
Publications