NO27G01090.1, NO27G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01090.1
Unique NameNO27G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr27:353664..355211 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:353664..355211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01090.1 vs.
Match: EWM20991.1 (DNA double-strand break repair and VJ recombination XRCC4 [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 2.600e-20
Identity = 139/405 (34.32%), Postives = 197/405 (48.64%), Query Frame = 0 
Query:    1 MASSSSGAAAPIKVDPLVL-SYNEQSSFFPVAANVTTDTV-PLCLFLDK-----QGCRQKEDGKEEAFFIVQVHHEQGDAQKKEPQVWTATIPAGETAGK----MVTLAELLRSPETVTTLEVISSLSTQKEDKLAAGATLTIKQVVEKGKKVLLKPTVLRATDAPVGSLAMALSRTATQLAHAHCALLAAERLNSLYQEEHEKMQGLLMMEVANKDRVQEELMFKFNLLLNTKRAKIAELLQRVGEKERESEMTDEEEGGGQEEEEEGQGGGAGGASGGWKGAKAKLRAQRKLLCDAREEGGNEGEEEENSHKKMQAKRRRLSAAAASGTGRGRSKSNRSSLALPLKKVKVEGRSEEDR----EGGMGSLLSAVKGTKEVLGGIDALL--RETKKSGASSSSSS 389
            +  + +G   P+ VD L   S +  SS FP  AN+  +T   LCL +D      QG      G  E+F ++Q H    DA   EP+VW A +  GE  G+    +V L  +LR P     L+V +       ++     +L+IK+ VEKGKK++L+ T L    +P  SL  ALS  A QLA A   L  AER  ++ + EHEKMQ +L M VA+KD VQ EL+ KFNL+LN KRAKIAEL +R+  K            GG E EE     GAGG   G + A  K R + +    ++   G  G+E E++ +   + RR     A    GRG +    +            G   E+       G   +L A  GT EV GG++ L   R   +SG+ +++S+
Sbjct:   18 LGHAENGWLPPMDVDSLQQQSPDRSSSPFPATANLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGESF-LLQAHRL--DAGGGEPRVWGAVV--GEDGGRRRRELVALGGVLRRPVGGRALDVAAV------EEADGALSLSIKERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAEREKAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQERLRSKGE----------GGAELEEGDDRRGAGGKPEGARTASKKKRGRGRESAVSQGPTGVVGDEGEDAKEGGGSGRRPFWRRAPVRGGRGSAAGGGAGDGSHGGGEDSGGEGAEEGIWGCHTGHADVLPAPVGTTEVHGGLEELFKARRGPRSGSLTTAST 401
The following BLAST results are available for this feature:
BLAST of NO27G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20991.12.600e-2034.32DNA double-strand break repair and VJ recombinatio... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01090NO27G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01090.1NO27G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01090.1.cds1NO27G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01090.1 ID=NO27G01090.1|Name=NO27G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG
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protein sequence of NO27G01090.1

>NO27G01090.1-protein ID=NO27G01090.1-protein|Name=NO27G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MASSSSGAAAPIKVDPLVLSYNEQSSFFPVAANVTTDTVPLCLFLDKQGC
RQKEDGKEEAFFIVQVHHEQGDAQKKEPQVWTATIPAGETAGKMVTLAEL
LRSPETVTTLEVISSLSTQKEDKLAAGATLTIKQVVEKGKKVLLKPTVLR
ATDAPVGSLAMALSRTATQLAHAHCALLAAERLNSLYQEEHEKMQGLLMM
EVANKDRVQEELMFKFNLLLNTKRAKIAELLQRVGEKERESEMTDEEEGG
GQEEEEEGQGGGAGGASGGWKGAKAKLRAQRKLLCDAREEGGNEGEEEEN
SHKKMQAKRRRLSAAAASGTGRGRSKSNRSSLALPLKKVKVEGRSEEDRE
GGMGSLLSAVKGTKEVLGGIDALLRETKKSGASSSSSSKKQQQQRQLKEK
RKQEKRGLDSSSSDYNGVDDSCSSSGDDGDDLVAYSAKGKSEEGGEGIHS
DGSGDDGGGGRGGRPATRGSERDDDFGRKEKGRGGGRGGGGGGGGVAAAM
NPVLRRGLMDDSDSD*
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mRNA from alignment at chr27:353664..355211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01090.1 ID=NO27G01090.1|Name=NO27G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr27:353664..355211+ (Nannochloropsis oceanica)
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG
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Coding sequence (CDS) from alignment at chr27:353664..355211+

>NO27G01090.1 ID=NO27G01090.1|Name=NO27G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr27:353664..355211+ (Nannochloropsis oceanica)
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG
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Synonyms
Publications