NO27G01080, NO27G01080 (gene) Nannochloropsis oceanica

Overview
NameNO27G01080
Unique NameNO27G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5298
Alignment locationchr27:353635..358932 -

Link to JBrowse

Properties
Property NameValue
DescriptionRING/U-box superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:353635..358932 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR031127E3_UB_ligase_RBR
IPR002867Znf_C6HC
IPR027370Znf-RING_LisH
IPR001841Znf_RING
Homology
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_009111583.1 (PREDICTED: probable E3 ubiquitin-protein ligase ARI3 [Brassica rapa])

HSP 1 Score: 152.5 bits (384), Expect = 4.500e-33
Identity = 123/491 (25.05%), Postives = 206/491 (41.96%), Query Frame = 0
Query:   79 RILSETDLAVQQKKLMGDAMELLNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR---EGVGSAN--GDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVA----------------LVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQL 540
            RI++   L   QK+++   MELL ++  QA+ LL  Y+WNV +L+D + E                                                                                  C++C ++     + +S  M+ ++CGH FC +C  + F  K+ EG +K++TC+  +C     E+ V +L+  E  EK+ +  +  YV D + V K CP    CG   + ++ GGE                           V+C  C  ++CFSC +E H   +C     WK++  DE+E  TL  +   ++ CP C+  V R +GCN M C CG ++C+ C G     + HTW  I+GH CG+   E V        D KR+  Y +QYR+ T  ++ + + + + RE++  ++                L+ ++R+ L+ +YVFA+Y F       + +      K  L+++ QQQL
Sbjct:   42 RIITNESLVAAQKEVLARVMELLTLKKSQARTLLIHYQWNVDKLLDVYSE--------------------------------------------------RGKDSLFKTAGLTVFSHTSLSESRYSLRKKMTCEICMDD-----DLQSYTMTRMDCGHCFCNNCWKEHFTVKINEGMSKRITCMAHKCNAICDEDVVKKLVYPEIAEKFDRFLVESYVDDNKRV-KWCPSTPHCGNAIRREDDGGE---------------------------VEC-SCGHQFCFSCLSESHSPCSCLMWKLWKKKCEDESE--TLNWITVHTRMCPKCSKSVQRSDGCNLMTCICGQHFCWLCGGAT--GLSHTWTTIDGHSCGKFKEEKVKQIEIAKRDLKRYTHYYHQYRSHTDSSKQEFKLRESVREKVASLSEKTLKSEQKWASNGADLLFRSRKVLSYTYVFAFYMFGEELFKDEMSDEEREMKKILFENLQQQL 444          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_013725040.1 (probable E3 ubiquitin-protein ligase ARI3 [Brassica napus])

HSP 1 Score: 152.5 bits (384), Expect = 4.500e-33
Identity = 123/491 (25.05%), Postives = 206/491 (41.96%), Query Frame = 0
Query:   79 RILSETDLAVQQKKLMGDAMELLNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR---EGVGSAN--GDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVA----------------LVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQL 540
            RI++   L   QK+++   MELL ++  QA+ LL  Y+WNV +L+D + E                                                                                  C++C ++     + +S  M+ ++CGH FC +C  + F  K+ EG +K++TC+  +C     E+ V +L+  E  EK+ +  +  YV D + V K CP    CG   + ++ GGE                           V+C  C  ++CFSC +E H   +C     WK++  DE+E  TL  +   ++ CP C+  V R +GCN M C CG ++C+ C G     + HTW  I+GH CG+   E V        D KR+  Y +QYR+ T  ++ + + + + RE++  ++                L+ ++R+ L+ +YVFA+Y F       + +      K  L+++ QQQL
Sbjct:   42 RIITNESLVAAQKEVLARVMELLTLKKSQARTLLIHYQWNVDKLLDVYSE--------------------------------------------------RGKDSLFKTAGLTVFSHTSLSESRYSLRKKMTCEICMDD-----DLQSYTMTRMDCGHCFCNNCWKEHFTVKINEGMSKRITCMAHKCNAICDEDVVKKLVYPEIAEKFDRFLVESYVDDNKRV-KWCPSTPHCGNAIRREDDGGE---------------------------VEC-SCGHQFCFSCLSESHSPCSCLMWKLWKKKCEDESE--TLNWITVHTRMCPKCSKSVQRSDGCNLMTCICGQHFCWLCGGAT--GLSHTWTTIDGHSCGKFKEEKVKQIEIAKRDLKRYTHYYHQYRSHTDSSKQEFKLRESVREKVASLSEKTLKSEQKWASNGADLLFRSRKVLSYTYVFAFYMFGEELFKDEMSDEEREMKKILFENLQQQL 444          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_013694063.1 (probable E3 ubiquitin-protein ligase ARI3 [Brassica napus])

HSP 1 Score: 151.0 bits (380), Expect = 1.300e-32
Identity = 123/494 (24.90%), Postives = 208/494 (42.11%), Query Frame = 0
Query:   76 SPYRILSETDLAVQQKKLMGDAMELLNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR---EGVGSAN--GDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVA----------------LVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQL 540
            S  +I++   L   QK+++   MELL ++  QA+ LL  YRWNV +L+D + E                                                                                  C++C ++     + +S  M+ ++CGH FC +C  + F  K+ EG +K++TC+  +C     E+ V +L+  E  EK+ +  +  YV D + V K CP    CG   + ++ GGE                           V+C  C  ++CFSC +E H   +C     W+++  DE+E  TL  +   ++ CP C+  V + +GCN M C CG ++C+ C G     + HTW  I+GH CG+   E V        D KR+  Y +QYR+ T  ++ + + + + RE++  ++                L+ ++R+AL+ +YVFA+Y F       + +      K  L+++ QQQL
Sbjct:   42 STSQIITNESLVAAQKEVLVRVMELLTLKKSQARTLLIHYRWNVDKLLDVYSE--------------------------------------------------RGKESLFKTAGLTVFAHTSLSESRYSLRKKMTCEICMDD-----DLQSYTMTRMDCGHCFCNNCWKEHFTVKINEGMSKRITCMAHKCNAICDEDVVKKLVYPELAEKFDRFLVESYVDDNKRV-KWCPSTPHCGNAIRREDDGGE---------------------------VEC-SCGHQFCFSCVSESHSPCSCLMWKLWEKKCEDESE--TLNWITVHTRMCPKCSKAVQKSDGCNLMTCICGQHFCWLCGGAT--GLSHTWTTIDGHSCGKFKEEKVRQMERAKRDLKRYTHYYHQYRSHTDSSKQEFKLRESVREKVASLSEKTHKSEQKWASNGADLLFRSRKALSYTYVFAFYMFGEELFKDEMSDEEREMKKILFENLQQQL 447          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_013610208.1 (PREDICTED: probable E3 ubiquitin-protein ligase ARI3 [Brassica oleracea var. oleracea])

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-32
Identity = 123/494 (24.90%), Postives = 207/494 (41.90%), Query Frame = 0
Query:   76 SPYRILSETDLAVQQKKLMGDAMELLNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR---EGVGSAN--GDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVA----------------LVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQL 540
            S  +I++   L   QK+++   MELL ++  QA+ LL  YRWNV +L+D + E                                                                                  C++C ++     + +S  M+ ++CGH FC +C  + F  K+ EG +K++TC+  +C     E+ V +L+  E  EK+ +  +  YV D + V K CP    CG   + ++ GGE                           V+C  C  ++CFSC +E H   +C     WK++  DE+E  TL  +   ++ CP C+  V + +GCN M C CG ++C+ C G     + HTW  I+GH CG+   E V        D KR+  Y +QYR+ T  ++ + + + + RE++  ++                L+ ++R+ L+ +YVFA+Y F       + +      K  L+++ QQQL
Sbjct:   42 STSQIITNESLVAAQKEVLVRVMELLTLKKSQARTLLIHYRWNVDKLLDVYSE--------------------------------------------------RGKESLFKTAGLTVFAHTSLSESRYSLRKKMTCEICMDD-----DLQSYTMTRMDCGHCFCNNCWKEHFTVKINEGMSKRITCMAHKCNAICDEDVVKKLVYPELAEKFDRFLVESYVDDNKRV-KWCPSTPHCGNAIRREDDGGE---------------------------VEC-SCGHQFCFSCLSESHSPCSCLMWKLWKKKCEDESE--TLNWITVHTRMCPKCSKAVQKSDGCNLMTCICGQHFCWLCGGAT--GLSHTWTTIDGHSCGKFKEEKVRQMERAKRDLKRYTHYYHQYRSHTDSSKQEFKLRESVREKVASLSEKTHKSEQKWASNGADLLFRSRKVLSYTYVFAFYMFGEELFKDEMSDEEREMKKILFENLQQQL 447          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: GAQ81569.1 (hypothetical protein KFL_000840120 [Klebsormidium nitens])

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-32
Identity = 113/375 (30.13%), Postives = 172/375 (45.87%), Query Frame = 0
Query:  209 FECQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKED---VEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR-----EGVGSANGDDTKRFMFYLNQYRA--QTFLNEDDAR----AKGAEREEMEDVA-----LVN------KARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQLEQECEVFAAML 551
            F C  CF++             ++C H++C DC    F  K+ EG+++++TC+  +C     EE VL+L+ + D   V++Y +  +  Y+ D    +K CP V  CG   +++   GE   E                       V+C  C L +CF+C  E H   +C+   +W E++ DE+E  T+  L   +KPCP C   V +  GCN ++C C   +C+ C       + H W+RIEGH CGR     E        D KR+M Y  +++   ++   ED  R    +K A  EE E V      L N      +ARR LA SY FA+Y F       D +   +     L++D QQQLE   E  A ++
Sbjct:  148 FTCGTCFDDVPA-----DSATVMDCSHIYCNDCWTTYFLMKIREGQSRRITCMAHKCNAICDEEKVLKLVAEADPLAVDRYERSLLESYIED-NSKVKWCPSVPHCGNALRVE---GEPYVE-----------------------VQCT-CGLTFCFNCGLEAHSPCSCDIWRRWDEKSRDESE--TVNWLVANTKPCPKCGKKVEKSGGCNLVQCTCKQPFCWLCGAAT--GLAHDWSRIEGHSCGRYKEDKEREAKKAETDLKRYMHYHTRWKGHMESLRLEDKQREVVQSKIAILEESESVVRDYSWLTNAQSCLFRARRVLAYSYAFAFYMFGSDLFKDDISPEQNEINQNLFEDHQQQLEATVERLAKLV 485          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_019166049.1 (PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Ipomoea nil])

HSP 1 Score: 149.4 bits (376), Expect = 3.800e-32
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0
Query:  211 CQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKED---VEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR-----EGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAERE----------EMEDVALVN-------KARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQLEQECE 545
            C +C EE  G     SE   ++CGH FC  C  + F  K++EG++K++ C+  +C     E  V +L+ KE     EK+ +  +  Y+ D   ++K CP    CG   +++                                V+C  C +++CFSC +E H   +C     W ++  DE+E  T+  +   +KPCP C   V +  GCN + C CG  +C+ C G   ++  HTW+RI GH CGR     E        D  R+M Y N+Y+A T   + ++R K   R+          +++D + V        ++RRAL+ SY FA+Y F       +  +     K  L++D+QQQLE   E
Sbjct:  123 CNICIEELPG-----SEMTKMDCGHCFCNSCWTEHFIVKIKEGQSKRIRCMAHKCFAICDESVVRKLVSKEHPDLAEKFDRFLLESYIED-NKMVKWCPSTPHCGNAIRIE--------------------------NDELFEVEC-SCGVQFCFSCLSEAHSPCSCLMWELWTKKCRDESE--TVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRD--HTWSRIAGHSCGRYKEDQEKKAERAKRDLYRYMHYHNRYKAHTDSFKQESRLKETIRDKVSSLEARDSKLKDFSWVTNGLNRLFRSRRALSYSYPFAFYMFGDDLFKDEMTNEQREIKQNLFEDQQQQLEANVE 452          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_021680765.1 (probable E3 ubiquitin-protein ligase ARI2 [Hevea brasiliensis])

HSP 1 Score: 148.7 bits (374), Expect = 6.500e-32
Identity = 108/373 (28.95%), Postives = 172/373 (46.11%), Query Frame = 0
Query:  211 CQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKED---VEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR-----EGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAK---------GAERE-EMEDVALVN-------KARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQLEQECEVFAAML 551
            C +C E+  G     ++   ++CGH FC DC  + F  K+ EG+++++ C+  +C     E  V  L+ K+     EK+ +  +  Y+ D   ++K CP +  CG   +++E                      E        V+C  C L++CFSC +E H   +C     W ++  DE+E  T+  +   +KPCP C   V +  GCN + C CG  +C+ C G   ++  HTW+RI GH CGR     E        D  R+M Y N+Y+A T   + +++ K           ERE  + D + VN       ++RR L+ SY FA+Y F       +  +     K  L++D+QQQLE   E  +  L
Sbjct:  122 CDICIEDVSG-----NKATRMDCGHCFCNDCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKKHPDLAEKFDRFLLESYIED-NKMVKWCPSIPHCGNAIRIEED------------------ECCE--------VEC-SCGLQFCFSCLSEAHSPCSCLMWELWSKKCQDESE--TVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQSFCWLCGGSTGRD--HTWSRISGHSCGRYKEDQEKKTERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETILEKVSISEERESRLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGEELFKDEMTTEEREIKQNLFEDQQQQLESNVEKLSKFL 457          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_016439611.1 (PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Nicotiana tabacum])

HSP 1 Score: 147.5 bits (371), Expect = 1.400e-31
Identity = 105/375 (28.00%), Postives = 169/375 (45.07%), Query Frame = 0
Query:  211 CQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKED---VEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR-----EGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEM-----------------EDVALVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQLEQECEVFAAMLVD 553
            C +C EE  G     S+   ++CGH FC +C  + F  K++EG++K++ CL  +C     E  + +L+ K      EK+ +  +  Y+ D   ++K CP +  CG   +L+                                V+C  C L++CFSC +E H   +C     W ++  DE+E  T+  +   +KPCP C   V +  GCN + C CG  +C+ C G   ++  HTW+ I GH CGR     E        D  R+M Y N+Y+A T  +  ++R +   +E++                   +  ++++RRAL+ SY FAYY F       +        K  L++D+QQQLE   E  +    D
Sbjct:  119 CNICIEEVAG-----SDVTKMDCGHCFCNECWTEHFIVKIKEGQSKRIRCLAHKCFAICDEAVIRKLVSKRHPDLAEKFDRFLLESYIED-NKMVKWCPSIPHCGNAIRLETDD--------------------------LCEVEC-SCGLQFCFSCLSEAHSPCSCLMWELWTKKCRDESE--TVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRD--HTWSHITGHSCGRYKEDQEKKAERAKRDLYRYMHYHNRYKAHTDSSTQESRLRDTIKEKVAILEAKESIVKDFSWITNGLYRLSRSRRALSFSYPFAYYMFGDDLFKDEMTKEEKEIKQHLFEDQQQQLEANIEKLSKAFED 456          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: CDY20037.1 (BnaA09g02140D [Brassica napus])

HSP 1 Score: 147.1 bits (370), Expect = 1.900e-31
Identity = 122/491 (24.85%), Postives = 205/491 (41.75%), Query Frame = 0
Query:   79 RILSETDLAVQQKKLMGDAMELLNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR---EGVGSAN--GDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVA----------------LVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQL 540
            RI++   L   QK+++   MELL ++  QA+ LL  Y+WNV +L+D + E                                                                                  C++C ++     + +S  M+ ++CGH FC +C  + F  K+ EG +K++TC+  +C     E+ V +L+  E  EK+ +  +  YV D + V K CP    CG   + ++ GGE                           V+C  C  ++CFSC +E H   +C     WK++  DE+E  TL  +   ++ CP C+  V R +GCN M C CG ++C+ C G     + HT   I+GH CG+   E V        D KR+  Y +QYR+ T  ++ + + + + RE++  ++                L+ ++R+ L+ +YVFA+Y F       + +      K  L+++ QQQL
Sbjct:   42 RIMTNESLVAAQKEVLARVMELLTLKKSQARTLLIHYQWNVDKLLDVYSE--------------------------------------------------RGKDSLFKTAGLTVFSHTSLSESRYSLRKKMTCEICMDD-----DLQSYTMTRMDCGHCFCNNCWKEHFTVKINEGMSKRITCMAHKCNAICDEDVVKKLVYPELAEKFDRFLVESYVDDNKRV-KWCPSTPHCGNAIRREDDGGE---------------------------VEC-SCGHQFCFSCLSESHSPCSCLMWKLWKKKCEDESE--TLNWITVHTRMCPKCSKSVQRSDGCNLMTCICGQHFCWLCGGAT--GLSHTGTTIDGHSCGKFKEEKVKQIEIAKRDLKRYTHYYHQYRSHTDSSKQEFKLRESVREKVASLSEKTLKSEQKWASNGADLLFRSRKVLSYTYVFAFYMFGEELFKDEMSDEEREMKKILFENLQQQL 444          
BLAST of NO27G01080 vs. NCBI_GenBank
Match: XP_009605030.1 (PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Nicotiana tomentosiformis])

HSP 1 Score: 146.7 bits (369), Expect = 2.500e-31
Identity = 104/375 (27.73%), Postives = 169/375 (45.07%), Query Frame = 0
Query:  211 CQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKED---VEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGR-----EGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEM-----------------EDVALVNKARRALANSYVFAYYAF-------DPASSLSGTKLTLYQDKQQQLEQECEVFAAMLVD 553
            C +C EE  G     S+   ++CGH FC +C  + F  K++EG++K++ C+  +C     E  + +L+ K      EK+ +  +  Y+ D   ++K CP +  CG   +L+                                V+C  C L++CFSC +E H   +C     W ++  DE+E  T+  +   +KPCP C   V +  GCN + C CG  +C+ C G   ++  HTW+ I GH CGR     E        D  R+M Y N+Y+A T  +  ++R +   +E++                   +  ++++RRAL+ SY FAYY F       +        K  L++D+QQQLE   E  +    D
Sbjct:  119 CNICIEEVAG-----SDVTKMDCGHCFCNECWTEHFIVKIKEGQSKRIRCMAHKCFAICDEAVIRKLVSKRHPDLAEKFDRFLLESYIED-NKMVKWCPSIPHCGNAIRLETDD--------------------------LCEVEC-SCGLQFCFSCLSEAHSPCSCLMWELWTKKCRDESE--TVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRD--HTWSHITGHSCGRYKEDQEKKAERAKRDLYRYMHYHNRYKAHTDSSTQESRLRDTIKEKVAILEAKESIVKDFSWITNGLYRLSRSRRALSFSYPFAYYMFGDDLFKDEMTKEEKEIKQHLFEDQQQQLEANIEKLSKAFED 456          
The following BLAST results are available for this feature:
BLAST of NO27G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009111583.14.500e-3325.05PREDICTED: probable E3 ubiquitin-protein ligase AR... [more]
XP_013725040.14.500e-3325.05probable E3 ubiquitin-protein ligase ARI3 [Brassic... [more]
XP_013694063.11.300e-3224.90probable E3 ubiquitin-protein ligase ARI3 [Brassic... [more]
XP_013610208.11.700e-3224.90PREDICTED: probable E3 ubiquitin-protein ligase AR... [more]
GAQ81569.11.700e-3230.13hypothetical protein KFL_000840120 [Klebsormidium ... [more]
XP_019166049.13.800e-3229.16PREDICTED: probable E3 ubiquitin-protein ligase AR... [more]
XP_021680765.16.500e-3228.95probable E3 ubiquitin-protein ligase ARI2 [Hevea b... [more]
XP_016439611.11.400e-3128.00PREDICTED: probable E3 ubiquitin-protein ligase AR... [more]
CDY20037.11.900e-3124.85BnaA09g02140D [Brassica napus][more]
XP_009605030.12.500e-3127.73PREDICTED: probable E3 ubiquitin-protein ligase AR... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673628gene_8698Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01080.3NO27G01080.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01080.2NO27G01080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01080.1NO27G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01080.3NO27G01080.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01080.2NO27G01080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01080.1NO27G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01080 ID=NO27G01080|Name=NO27G01080|organism=Nannochloropsis oceanica|type=gene|length=5298bp
CCCCCCCCACAAATTACCTCCTCCATTCCCGTCGGCACCCTGGATCATTA
ATTGCCGTGACCAGTTGCACCACTTCCTCTCTCGACCCTCCCATCGTACG
TACTCCACCAACAATATCAAGCAGCGGATGAAGAGACGCGCATAGCCGAG
GATATGGTTGACCAGGGCAGCAAAATGAAAGCGAGGGAGGGAGAGGAAGA
GGACGAGGAGGAGGAAAAAGAGGAGGTTGAGGACGAGGAGGAAGACAGCT
ATGAGTATGAATATGATGAAGATGACGGAGGCGGGTATTTGTCTATCATG
GATGGTTCAAGCAGCACAAACGGGGATGGCAAGAACTCGCCACTTAGCAC
ATGGGGAGGGAAAGGGGGAGGGGGGGTCTCACCGTATCGCATCTTGAGTG
AGACGGACTTGGCGGTGCAGCAAAAGAAGCTGATGGGGGATGCCATGGAG
TTGCTGAACGTGGAAGCGCTGCAGGCGAAGgtaagaccgtccttcccatt
caccctccctccctcaaggtacaaattaccaatcctgctttccttgccct
cgctttctgtctttttctctagATGCTGCTAAGGCGGTACAGGTGGAATG
TGCGGGAGCTCATGGACAATTTCGAAGAGGCCACCCACTTCCTGGAAGAG
TACCGCGCAGCAGCAGTAGCAGCCAAGGCTGAAACAGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGGAG
GTGGGAGGAAGCAGAAAAAGGGCAAGGGGGGAGGGCGAGTAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAGCGGCGGCGGCGGC
AGCAGCAGCGCCGACCACTTTTGAGTGCCAGGTTTGCTTCGAGGAAAAGA
AGGGAGGGAGGGAGGGGGAGAGCGAGGGAATGTCGTTGGAGTGTGGGCAT
GTCTTCTGTCGAGACTGCGTGGGGCAGCAGTTCAAGACCAAGGTAGAGGA
GGGAGAGGCCAAGAAGCTTACCTGCCTGTACCCGCGCTGCCCGCAGAGAT
ATAAGGAGGAAACGGTGCTTGAGTTGCTAAAGAAGGAGGATGTGGAGAAG
gtgggtaggtaggtaggtaggtagggagggagggagagcgggagggtagt
gatcgagtgagctggcgattgtgatccaacatgtgttccctcactcccat
ctaaccccttccagTACTTGAAGCAAGACATATTATACTATGTGGGAGAC
TGCCAAGGCGTGATAAAGCCCTGTCCAGGGGTCGACTGTGGCCTGTACGC
GCAGCTGCAGGAGGGAGGGGGTGAGGGAAGGAGGGAGGGAGGGAGGATTA
GTGTGGTCGGTAGCCGAGCAGCAGCGGCAGAAAGAGGGAGGACAGCGCCG
GTGCTTGTGAAATGCCCTGGGTGTCGGCTCAAGTGGTGTTTCTCGTGCGC
GGCAGAACCTCACTTTGTCCTGGCGTGTGAGTACGCGACCAAGTGGAAAG
AGCGGACGGCGGACGAGGCGGAGATGGCCACGTTGGAGCTGTTGAAGACG
ACGAGCAAGCCTTGCCCGTGGTGTGCGGCCTTCGTGCATCGAATTGAGGG
CTGCAACTTCATgtaagagggcagacgggtgggtgggagggatgggaggg
gggaagggagggcgggcaccatggacaagcgagtgtgccttggttgcggc
gctgtcttgtcaaggtgagctgggtgctgctgaccggctgccttgctgga
tttcgctttgagcatggcacccatagcttgcggtcacgatgatatccctc
caaaaacctacatgcacacatgtctctccctctcattcctctctccctcc
ctgctccgttcccctcccccagGCGGTGCAAGTGCGGCGGATACTGGTGC
TACAAGTGCTCGGGGAGGGTGGAGAAGAACGTGGGCCACACCTGGAACCG
CATCGAGGGCCACGAGTGCGGGCGGGAGGGAGTGGGCTCTGCCAACGGGG
ACGACACTAAGCGCTTCATGTTCTACCTTAACCAGTACCGAGCCCAGgta
cgcctttccctcctccctccctccctcctttctgccctctctttcccctg
tacttcctactcgtggcacggtcggagtacgccacaccacctttcggtct
catagtccaggttttaagccagccctccctccctccctcccttgcaccca
gACATTCCTCAACGAAGACGACGCCCGGGCCAAGGGGGCGGAGCGCGAAG
AGATGGAGGACGTGGCGCTGGTGAACAAGGCCAGGCGGGCGCTAGCAAAT
TCGTACGTGTTCGCCTACTACGCCTTTGATCCGGCCTCCTCATTGAGTGG
CACGAAGCTGACGCTGTACCAGGACAAGCAGCAGCAGTTGGAGCAGGAGg
tagacccgtaaaggagggacaagcggggagcaagggtcgggcgatttcct
gtataaaatgaaaccatagacaaagggtttcttaaatttatacacacagt
cgtttcttttcttgccagacgaccgcgttagcaccatggattcctcaatc
ctcttccattaccccccccccccccttgccccccgatagTGCGAGGTGTT
CGCAGCCATGTTGGTAGATATGCACATCCCCAACCTCAAGCGACGGCCCA
AGGCCCTGGAGTTGACCTCCCAACGAGACAAGCTCCGGCATTGGCTCCAG
gtaggtaggaggaggaaggcgagggatgggtgtaagtgtagtcggtcctt
gcttgtattgagatataagaatagtgggtggatgtgcccccgcttatgta
tcatagagccttcactctcttcatcgtttttctctattgccccctccctg
tctgtccagGCACTGCACGGCACCATCATTCACGACATCATCGATGACAG
CTGCGGTGTCACCATTCCCGAGTTTGACCTGGACGGGATATGAGCCAGGA
GGGAGGGACGGAGGGAGGGAGGGAGGCAGGGAGAGCAGGCGGAAGGGAAG
GAGGGAAGGAAGAAGAATGAATGAGGCAGGGATGAGAGGGGTTGGGGGAT
ACGTGGTTAGAGTGTGCATAAAGTAGGTGCAAGTACAAGTAGTGGATAGT
GGATTTATAAGAAGAGTAGAACCAGTAAATGAGCCCCGAGTAGCATCCTC
CTATCTTTCATTTGTTCATTTTGAGAATGTCTCTCATATAAGTATGAAGG
AGGGGAAAATGAGAAAAACGCTTTGTGTGGGCCTGGTATGAGCTAGAGAG
GGAGTAACATTAGTCTGTGTGAGGCTAGTCAGGTGCACGACTGTAGGCAT
GAATAGGGAAGAGAAAAAGACAAGCAGGACTCACACACACATCACCAGTA
CAGGTTCAGGTTGGAGTGTCAATTTGAGCTTTTTTGCACCTAGTGACTGG
TTCGGGAGGAAGATGTGGGCGTGCCGCAAGGGCAAGGCAGCTCCTGCAAA
CCTTTGGAAAAAATGGTAGAAAGAGCGGCCAAAACGACAACGACAGCGAA
AAGCCTTGGAGCTTGAATGTCTGCTTGTTATGTGCTTTTACCTTTCTCGT
TTTTGACTGCTTTTGCTTTCATACATGCTGACTGTACACGCTCACACACA
TCTTTCCTCTTCACTCCTACCTCGACCTTTCCATTCTCTCCTCGTAGTCT
CCCTGTCATCCGCTCTCTCCACCCCCTTCCTCCCTCCCTCTTTCCCAACA
TCTTTCCTCCCCCTTCCTTTCCTAATCCGAATCCGAATCATCCATCAAAC
CCCTCCTCAGAACTGGATTCATAGCGGCGGCGACGCCTCCTCCCCCTCCT
CCTCCTCCTCTTCCTCCTCCTCGCCCTTTCTCCTTCCTCCCAAAATCGTC
GTCTCTCTCAGAGCCTCTTGTCGCCGGTCTTCCTCCTCTTCCACCACCAC
CGTCATCACCACTACCATCACTGTGAATGCCCTCACCTCCCTCCTCACTC
TTGCCCTTCGCACTGTAAGCTACTAAATCATCACCATCATCACCACTGCT
GCTGCAGCTGTCATCGACGCCATTGTAATCGCTGCTGCTACTGTCCAGTC
CCCGTTTCTCCTGTTTCCTCTTTTCCTTCAACTGCCGCTGCTGCTGCTGC
TTCTTACTGCTGCTGCTACTGCTGGCACCGCTCTTCTTCGTCTCCCTCAA
CAACGCATCTATCCCTCCAAGAACTTCCTTTGTGCCTTTCACAGCCGACA
ATAAGCTCCCCATCCCTCCCTCCCTATCTTCTTCGCTCCTCCCCTCCACC
TTGACCTTTTTCAAGGGCAACGCCAAGCTACTACGGTTGCTCTTGCTCCT
GCCACGACCGGTTCCCGACGCAGCAGCAGCGGACAGTCTTCTCCTCTTCG
CCTGCATTTTCTTGTGACTATTCTCTTCCTCCTCTCCCTCATTTCCTCCT
TCCTCCCTGGCATCGCAAAGCAGCTTCCGCTGAGCTCTCAACTTTGCCTT
CGCTCCCTTCCAGCCCCCGCTTGCTCCCCCAGCGCCTCCGCCCTGTCCCT
CCTCCTCCTCTTCCTGCCCCCCTCCCTCCTCTTCATCCGTCATCTCTGAC
TCCCTCTCCTTCTCCCCTACCCGTTGCAGAAGCTCGGCAATCTTTGCCCT
TTTCGTATTGAGAAGCAAATTAAATTTGAACATTAACTCCTCTTGGACCC
TGTCCTTATTTGCCACCTCCATCATCAAAAGACCCTGCATCTTTTCATGT
TCTTCTTGGTATAGACTGTTTAGTCTTTCTGCCGCTAGCAAGGCACAGTG
GGCATGGGCTAGTTGTGTGGCTGTGCGTGACAAGGCCATGGCCAGGCTTC
CGACTGGGGCGTCAGTGGCGCGCAAGACAGTCGGTTTTAAGAGCACCTTT
TTGCCTTTCTCCACCACCTGCTTAATTGTCAACGTCGCCCCCGCTGCGAG
CTTGTCTTCTTTTTGTGTTGATAATGAGGAAATCACTTCCAGCGTTGTAA
CTGTTTCGGGGCTACGCAAGAGCTCCGCTAGAGTGACCATCTTTCCAGCA
GTCTCCCCTGCAGGGATTGTAGCAGTCCAGACCTGTGGCTCCTTTTTTTG
TGCGTCACCCTGCTCATGATGCACCTGCACAATAAAAAAAGCTTCCTCCT
TACCGTCCTCCTTCTGTCTGCAGCCTTGCTTGTCGAGGAACAGGCATAAG
GGAACGGTGTCTGTGGTCACATTGGCCGCCACGGGAAAGAAGCTCGATTG
CTCATTGTAGGAGAGGACGAGTGGGTCAACTTTAATTGGAGCGGCCGCAC
CGCTGCTGCTGCTTGCCATGCCGGCGTTGGCGCTGCGTGTCCGTGTCT
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protein sequence of NO27G01080.3

>NO27G01080.3-protein ID=NO27G01080.3-protein|Name=NO27G01080.3|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MVDQGSKMKAREGEEEDEEEEKEEVEDEEEDSYEYEYDEDDGGGYLSIMD
GSSSTNGDGKNSPLSTWGGKGGGGVSPYRILSETDLAVQQKKLMGDAMEL
LNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYRAAAVAAKAETAAA
AAAAAAAAAAAAAAAATGGGRKQKKGKGGGRVTAAAAAAAAAASAAAAAA
AAAAAPTTFECQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKV
EEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQG
VIKPCPGVDCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLV
KCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSK
PCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHEC
GREGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVALV
NKARRALANSYVFAYYAFDPASSLSGTKLTLYQDKQQQLEQEVDP*
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protein sequence of NO27G01080.2

>NO27G01080.2-protein ID=NO27G01080.2-protein|Name=NO27G01080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MVDQGSKMKAREGEEEDEEEEKEEVEDEEEDSYEYEYDEDDGGGYLSIMD
GSSSTNGDGKNSPLSTWGGKGGGGVSPYRILSETDLAVQQKKLMGDAMEL
LNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYRAAAVAAKAETAAA
AAAAAAAAAAAAAAAATGGGRKQKKGKGGGRVTAAAAAAAAAASAAAAAA
AAAAAPTTFECQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKV
EEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQG
VIKPCPGVDCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLV
KCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSK
PCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHEC
GREGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVALV
NKARRALANSYVFAYYAFDPASSLSGTKLTLYQDKQQQLEQECEVFAAML
VDMHIPNLKRRPKALELTSQRDKLRHWLQVGRRRKARDGCKCSRSLLVLR
YKNSGWMCPRLCIIEPSLSSSFFSIAPSLSVQALHGTIIHDIIDDSCGVT
IPEFDLDGI*
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protein sequence of NO27G01080.1

>NO27G01080.1-protein ID=NO27G01080.1-protein|Name=NO27G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MVDQGSKMKAREGEEEDEEEEKEEVEDEEEDSYEYEYDEDDGGGYLSIMD
GSSSTNGDGKNSPLSTWGGKGGGGVSPYRILSETDLAVQQKKLMGDAMEL
LNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYRAAAVAAKAETAAA
AAAAAAAAAAAAAAAATGGGRKQKKGKGGGRVTAAAAAAAAAASAAAAAA
AAAAAPTTFECQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKV
EEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQG
VIKPCPGVDCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLV
KCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSK
PCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHEC
GREGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVALV
NKARRALANSYVFAYYAFDPASSLSGTKLTLYQDKQQQLEQECEVFAAML
VDMHIPNLKRRPKALELTSQRDKLRHWLQALHGTIIHDIIDDSCGVTIPE
FDLDGI*
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Synonyms
Publications