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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr27 | genome | chr27:356358..358932 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G01080.3 vs.
Match: XP_006395406.1 (probable E3 ubiquitin-protein ligase ARI3 [Eutrema salsugineum]; ESQ32692.1 hypothetical protein EUTSA_v10005453mg [Eutrema salsugineum]) HSP 1 Score: 151.8 bits (382), Expect = 6.300e-33 Identity = 112/370 (30.27%), Postives = 168/370 (45.41%), Query Frame = 0
Query: 208 TFECQVCFEEKKGGREGESEGMS-LECGHVFCRDCVGQQFKTKVEEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQGVIKPCPGV-DCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLVKCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSKPCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHECGREGVGSAN-----GDDTKRFMFYLNQYRAQTFLN--EDDARAKGAEREEM-----------------EDVALVNKARRALANSYVFAYYAF------DPASSLS-GTKLTLYQDKQQQLEQEVD 545
T C +C E+ + S M+ +ECGH FC DC + F + EG++K++TC+ +C E+ V +L+ E EK+ + + YV D ++K CP CG + E E V V+C C L++CFSC +E H +C W+++ DE+E T+ + ++ CP C VHR +GCN M C CG ++C+ C G ++ HTW I GH CGR D R+ Y ++A T + ED R E+ E + V L+ ++RR L+ SY FA+Y F D S L K L++D+QQQLE V+
Sbjct: 116 TMSCDICIED-----DIPSSAMTRMECGHCFCNDCWKEHFTVNINEGKSKRITCMAHKCNAICDEDVVRKLVSPELAEKFDRFLVESYVED-NKMVKWCPSTPHCGNAIRKAEEDEE-------------------------VEVEC-SCGLQFCFSCLSESHSPCSCLMWKLWRKKCEDESE--TVNWITVHTRVCPKCNKPVHRSDGCNLMTCICGQHFCWLCGGATGRD--HTWTSISGHSCGRYKEDKVRQMERAKRDLNRYTHYYYHFKAHTDSSKLEDKRRKSILEKAEFISEKNDQLVFKDLTWLTDGVDLLFRSRRILSYSYPFAFYMFGEELFKDEMSDLDREMKKNLFEDQQQQLEGNVE 449
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G01080.3 ID=NO27G01080.3|Name=NO27G01080.3|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp
CCCCCCCCACAAATTACCTCCTCCATTCCCGTCGGCACCCTGGATCATTA
ATTGCCGTGACCAGTTGCACCACTTCCTCTCTCGACCCTCCCATCGTACG
TACTCCACCAACAATATCAAGCAGCGGATGAAGAGACGCGCATAGCCGAG
GATATGGTTGACCAGGGCAGCAAAATGAAAGCGAGGGAGGGAGAGGAAGA
GGACGAGGAGGAGGAAAAAGAGGAGGTTGAGGACGAGGAGGAAGACAGCT
ATGAGTATGAATATGATGAAGATGACGGAGGCGGGTATTTGTCTATCATG
GATGGTTCAAGCAGCACAAACGGGGATGGCAAGAACTCGCCACTTAGCAC
ATGGGGAGGGAAAGGGGGAGGGGGGGTCTCACCGTATCGCATCTTGAGTG
AGACGGACTTGGCGGTGCAGCAAAAGAAGCTGATGGGGGATGCCATGGAG
TTGCTGAACGTGGAAGCGCTGCAGGCGAAGATGCTGCTAAGGCGGTACAG
GTGGAATGTGCGGGAGCTCATGGACAATTTCGAAGAGGCCACCCACTTCC
TGGAAGAGTACCGCGCAGCAGCAGTAGCAGCCAAGGCTGAAACAGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACGGGAGGTGGGAGGAAGCAGAAAAAGGGCAAGGGGGGAGGGCGAGTAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAGCGGCG
GCGGCGGCAGCAGCAGCGCCGACCACTTTTGAGTGCCAGGTTTGCTTCGA
GGAAAAGAAGGGAGGGAGGGAGGGGGAGAGCGAGGGAATGTCGTTGGAGT
GTGGGCATGTCTTCTGTCGAGACTGCGTGGGGCAGCAGTTCAAGACCAAG
GTAGAGGAGGGAGAGGCCAAGAAGCTTACCTGCCTGTACCCGCGCTGCCC
GCAGAGATATAAGGAGGAAACGGTGCTTGAGTTGCTAAAGAAGGAGGATG
TGGAGAAGTACTTGAAGCAAGACATATTATACTATGTGGGAGACTGCCAA
GGCGTGATAAAGCCCTGTCCAGGGGTCGACTGTGGCCTGTACGCGCAGCT
GCAGGAGGGAGGGGGTGAGGGAAGGAGGGAGGGAGGGAGGATTAGTGTGG
TCGGTAGCCGAGCAGCAGCGGCAGAAAGAGGGAGGACAGCGCCGGTGCTT
GTGAAATGCCCTGGGTGTCGGCTCAAGTGGTGTTTCTCGTGCGCGGCAGA
ACCTCACTTTGTCCTGGCGTGTGAGTACGCGACCAAGTGGAAAGAGCGGA
CGGCGGACGAGGCGGAGATGGCCACGTTGGAGCTGTTGAAGACGACGAGC
AAGCCTTGCCCGTGGTGTGCGGCCTTCGTGCATCGAATTGAGGGCTGCAA
CTTCATGCGGTGCAAGTGCGGCGGATACTGGTGCTACAAGTGCTCGGGGA
GGGTGGAGAAGAACGTGGGCCACACCTGGAACCGCATCGAGGGCCACGAG
TGCGGGCGGGAGGGAGTGGGCTCTGCCAACGGGGACGACACTAAGCGCTT
CATGTTCTACCTTAACCAGTACCGAGCCCAGACATTCCTCAACGAAGACG
ACGCCCGGGCCAAGGGGGCGGAGCGCGAAGAGATGGAGGACGTGGCGCTG
GTGAACAAGGCCAGGCGGGCGCTAGCAAATTCGTACGTGTTCGCCTACTA
CGCCTTTGATCCGGCCTCCTCATTGAGTGGCACGAAGCTGACGCTGTACC
AGGACAAGCAGCAGCAGTTGGAGCAGGAGGTAGACCCGTAAAGGAGGGAC
AAGCGGGGAGCAAGGGTCGGGCGATTTCCTGTATAAAATGAAACCATAGA
CAAAGGGTTTCTTAAATTTATACACACAGTCGTTTCTTTTCTTGCCAGAC
GACCGCGTTAGCACCATGGATTCCTCAATCCTCTTCCATTACCCCCCCCC
CCCCC back to topprotein sequence of NO27G01080.3 >NO27G01080.3-protein ID=NO27G01080.3-protein|Name=NO27G01080.3|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MVDQGSKMKAREGEEEDEEEEKEEVEDEEEDSYEYEYDEDDGGGYLSIMD
GSSSTNGDGKNSPLSTWGGKGGGGVSPYRILSETDLAVQQKKLMGDAMEL
LNVEALQAKMLLRRYRWNVRELMDNFEEATHFLEEYRAAAVAAKAETAAA
AAAAAAAAAAAAAAAATGGGRKQKKGKGGGRVTAAAAAAAAAASAAAAAA
AAAAAPTTFECQVCFEEKKGGREGESEGMSLECGHVFCRDCVGQQFKTKV
EEGEAKKLTCLYPRCPQRYKEETVLELLKKEDVEKYLKQDILYYVGDCQG
VIKPCPGVDCGLYAQLQEGGGEGRREGGRISVVGSRAAAAERGRTAPVLV
KCPGCRLKWCFSCAAEPHFVLACEYATKWKERTADEAEMATLELLKTTSK
PCPWCAAFVHRIEGCNFMRCKCGGYWCYKCSGRVEKNVGHTWNRIEGHEC
GREGVGSANGDDTKRFMFYLNQYRAQTFLNEDDARAKGAEREEMEDVALV
NKARRALANSYVFAYYAFDPASSLSGTKLTLYQDKQQQLEQEVDP* back to topmRNA from alignment at chr27:356358..358932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G01080.3 ID=NO27G01080.3|Name=NO27G01080.3|organism=Nannochloropsis oceanica|type=mRNA|length=2575bp|location=Sequence derived from alignment at chr27:356358..358932- (Nannochloropsis oceanica)
CCCCCCCCACAAATTACCTCCTCCATTCCCGTCGGCACCCTGGATCATTA
ATTGCCGTGACCAGTTGCACCACTTCCTCTCTCGACCCTCCCATCGTACG
TACTCCACCAACAATATCAAGCAGCGGATGAAGAGACGCGCATAGCCGAG
GATATGGTTGACCAGGGCAGCAAAATGAAAGCGAGGGAGGGAGAGGAAGA
GGACGAGGAGGAGGAAAAAGAGGAGGTTGAGGACGAGGAGGAAGACAGCT
ATGAGTATGAATATGATGAAGATGACGGAGGCGGGTATTTGTCTATCATG
GATGGTTCAAGCAGCACAAACGGGGATGGCAAGAACTCGCCACTTAGCAC
ATGGGGAGGGAAAGGGGGAGGGGGGGTCTCACCGTATCGCATCTTGAGTG
AGACGGACTTGGCGGTGCAGCAAAAGAAGCTGATGGGGGATGCCATGGAG
TTGCTGAACGTGGAAGCGCTGCAGGCGAAGGTAAGACCGTCCTTCCCATT
CACCCTCCCTCCCTCAAGGTACAAATTACCAATCCTGCTTTCCTTGCCCT
CGCTTTCTGTCTTTTTCTCTAGATGCTGCTAAGGCGGTACAGGTGGAATG
TGCGGGAGCTCATGGACAATTTCGAAGAGGCCACCCACTTCCTGGAAGAG
TACCGCGCAGCAGCAGTAGCAGCCAAGGCTGAAACAGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGGAG
GTGGGAGGAAGCAGAAAAAGGGCAAGGGGGGAGGGCGAGTAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAGCGGCGGCGGCGGC
AGCAGCAGCGCCGACCACTTTTGAGTGCCAGGTTTGCTTCGAGGAAAAGA
AGGGAGGGAGGGAGGGGGAGAGCGAGGGAATGTCGTTGGAGTGTGGGCAT
GTCTTCTGTCGAGACTGCGTGGGGCAGCAGTTCAAGACCAAGGTAGAGGA
GGGAGAGGCCAAGAAGCTTACCTGCCTGTACCCGCGCTGCCCGCAGAGAT
ATAAGGAGGAAACGGTGCTTGAGTTGCTAAAGAAGGAGGATGTGGAGAAG
GTGGGTAGGTAGGTAGGTAGGTAGGGAGGGAGGGAGAGCGGGAGGGTAGT
GATCGAGTGAGCTGGCGATTGTGATCCAACATGTGTTCCCTCACTCCCAT
CTAACCCCTTCCAGTACTTGAAGCAAGACATATTATACTATGTGGGAGAC
TGCCAAGGCGTGATAAAGCCCTGTCCAGGGGTCGACTGTGGCCTGTACGC
GCAGCTGCAGGAGGGAGGGGGTGAGGGAAGGAGGGAGGGAGGGAGGATTA
GTGTGGTCGGTAGCCGAGCAGCAGCGGCAGAAAGAGGGAGGACAGCGCCG
GTGCTTGTGAAATGCCCTGGGTGTCGGCTCAAGTGGTGTTTCTCGTGCGC
GGCAGAACCTCACTTTGTCCTGGCGTGTGAGTACGCGACCAAGTGGAAAG
AGCGGACGGCGGACGAGGCGGAGATGGCCACGTTGGAGCTGTTGAAGACG
ACGAGCAAGCCTTGCCCGTGGTGTGCGGCCTTCGTGCATCGAATTGAGGG
CTGCAACTTCATGTAAGAGGGCAGACGGGTGGGTGGGAGGGATGGGAGGG
GGGAAGGGAGGGCGGGCACCATGGACAAGCGAGTGTGCCTTGGTTGCGGC
GCTGTCTTGTCAAGGTGAGCTGGGTGCTGCTGACCGGCTGCCTTGCTGGA
TTTCGCTTTGAGCATGGCACCCATAGCTTGCGGTCACGATGATATCCCTC
CAAAAACCTACATGCACACATGTCTCTCCCTCTCATTCCTCTCTCCCTCC
CTGCTCCGTTCCCCTCCCCCAGGCGGTGCAAGTGCGGCGGATACTGGTGC
TACAAGTGCTCGGGGAGGGTGGAGAAGAACGTGGGCCACACCTGGAACCG
CATCGAGGGCCACGAGTGCGGGCGGGAGGGAGTGGGCTCTGCCAACGGGG
ACGACACTAAGCGCTTCATGTTCTACCTTAACCAGTACCGAGCCCAGGTA
CGCCTTTCCCTCCTCCCTCCCTCCCTCCTTTCTGCCCTCTCTTTCCCCTG
TACTTCCTACTCGTGGCACGGTCGGAGTACGCCACACCACCTTTCGGTCT
CATAGTCCAGGTTTTAAGCCAGCCCTCCCTCCCTCCCTCCCTTGCACCCA
GACATTCCTCAACGAAGACGACGCCCGGGCCAAGGGGGCGGAGCGCGAAG
AGATGGAGGACGTGGCGCTGGTGAACAAGGCCAGGCGGGCGCTAGCAAAT
TCGTACGTGTTCGCCTACTACGCCTTTGATCCGGCCTCCTCATTGAGTGG
CACGAAGCTGACGCTGTACCAGGACAAGCAGCAGCAGTTGGAGCAGGAGG
TAGACCCGTAAAGGAGGGACAAGCGGGGAGCAAGGGTCGGGCGATTTCCT
GTATAAAATGAAACCATAGACAAAGGGTTTCTTAAATTTATACACACAGT
CGTTTCTTTTCTTGCCAGACGACCGCGTTAGCACCATGGATTCCTCAATC
CTCTTCCATTACCCCCCCCCCCCCC back to topCoding sequence (CDS) from alignment at chr27:356358..358932- >NO27G01080.3 ID=NO27G01080.3|Name=NO27G01080.3|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at chr27:356358..358932- (Nannochloropsis oceanica)
ATGGTTGACCAGGGCAGCAAAATGAAAGCGAGGGAGGGAGAGGAAGAGGA
CGAGGAGGAGGAAAAAGAGGAGGTTGAGGACGAGGAGGAAGACAGCTATG
AGTATGAATATGATGAAGATGACGGAGGCGGGTATTTGTCTATCATGGAT
GGTTCAAGCAGCACAAACGGGGATGGCAAGAACTCGCCACTTAGCACATG
GGGAGGGAAAGGGGGAGGGGGGGTCTCACCGTATCGCATCTTGAGTGAGA
CGGACTTGGCGGTGCAGCAAAAGAAGCTGATGGGGGATGCCATGGAGTTG
CTGAACGTGGAAGCGCTGCAGGCGAAGATGCTGCTAAGGCGGTACAGGTG
GAATGTGCGGGAGCTCATGGACAATTTCGAAGAGGCCACCCACTTCCTGG
AAGAGTACCGCGCAGCAGCAGTAGCAGCCAAGGCTGAAACAGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
GGGAGGTGGGAGGAAGCAGAAAAAGGGCAAGGGGGGAGGGCGAGTAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAGCGGCGGCG
GCGGCAGCAGCAGCGCCGACCACTTTTGAGTGCCAGGTTTGCTTCGAGGA
AAAGAAGGGAGGGAGGGAGGGGGAGAGCGAGGGAATGTCGTTGGAGTGTG
GGCATGTCTTCTGTCGAGACTGCGTGGGGCAGCAGTTCAAGACCAAGGTA
GAGGAGGGAGAGGCCAAGAAGCTTACCTGCCTGTACCCGCGCTGCCCGCA
GAGATATAAGGAGGAAACGGTGCTTGAGTTGCTAAAGAAGGAGGATGTGG
AGAAGTACTTGAAGCAAGACATATTATACTATGTGGGAGACTGCCAAGGC
GTGATAAAGCCCTGTCCAGGGGTCGACTGTGGCCTGTACGCGCAGCTGCA
GGAGGGAGGGGGTGAGGGAAGGAGGGAGGGAGGGAGGATTAGTGTGGTCG
GTAGCCGAGCAGCAGCGGCAGAAAGAGGGAGGACAGCGCCGGTGCTTGTG
AAATGCCCTGGGTGTCGGCTCAAGTGGTGTTTCTCGTGCGCGGCAGAACC
TCACTTTGTCCTGGCGTGTGAGTACGCGACCAAGTGGAAAGAGCGGACGG
CGGACGAGGCGGAGATGGCCACGTTGGAGCTGTTGAAGACGACGAGCAAG
CCTTGCCCGTGGTGTGCGGCCTTCGTGCATCGAATTGAGGGCTGCAACTT
CATGCGGTGCAAGTGCGGCGGATACTGGTGCTACAAGTGCTCGGGGAGGG
TGGAGAAGAACGTGGGCCACACCTGGAACCGCATCGAGGGCCACGAGTGC
GGGCGGGAGGGAGTGGGCTCTGCCAACGGGGACGACACTAAGCGCTTCAT
GTTCTACCTTAACCAGTACCGAGCCCAGACATTCCTCAACGAAGACGACG
CCCGGGCCAAGGGGGCGGAGCGCGAAGAGATGGAGGACGTGGCGCTGGTG
AACAAGGCCAGGCGGGCGCTAGCAAATTCGTACGTGTTCGCCTACTACGC
CTTTGATCCGGCCTCCTCATTGAGTGGCACGAAGCTGACGCTGTACCAGG
ACAAGCAGCAGCAGTTGGAGCAGGAGGTAGACCCGTAA back to top
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