NO27G00840, NO27G00840 (gene) Nannochloropsis oceanica

Overview
NameNO27G00840
Unique NameNO27G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2601
Alignment locationchr27:292394..294994 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:292394..294994 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO27G00840 vs. NCBI_GenBank
Match: EWM20996.1 (hypothetical protein Naga_100081g10 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 8.500e-44
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 0 
Query:    1 MMAANYPSASTYGAVEDPRVHDRTALLKGTIQLTNETNELAAGIGENLREQRTSLEDGSTRIREMKGFAGEARRLLNQMARRAACHRVTLWGIIVFLLVCIGLTVYRLLTNRGHII 117
            MMAA+YP+A TYGAVE+  VHDRTALLKGTI+LT ETN+LAAGIGE++R QR +LEDGSTRIREMKGFAGEARR+LNQMARRAA HR TLWGIIVFL +CIGLT+YRL TNRGHII
Sbjct:    1 MMAASYPAAYTYGAVEE--VHDRTALLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII 114
The following BLAST results are available for this feature:
BLAST of NO27G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20996.18.500e-4481.90hypothetical protein Naga_100081g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00840.1NO27G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559854gene_8673Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100081g10gene9414Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00840.1NO27G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00840 ID=NO27G00840|Name=NO27G00840|organism=Nannochloropsis oceanica|type=gene|length=2601bp
ACACACAGAGCCGCTGCCGCTGTCGGGAGATGATGGCAGCAAATTATCCT
TCCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGTGgtaagtcctca
tctctttccgacctccccaccccggccatgccgcttgtctgactagtgtt
gtcgtcttgcggcacgaattaacggtcatgctcacacacctatactctca
cagCATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGACGAACGA
GACGAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGA
CCTCCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGGGTTTGCA
GGGGAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCA
CCGTGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCT
TGACCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATGAGAGCAG
AAAGCGAGGGCCAGGGAGGGGAGACAAGAAAGGCAATTTTGTCCAACCAT
CGTACATTTAGAAAATAATGTAAAACGATAGTAGCAGAGGGAGTGCGTAA
AACAGGTGCATGGATGAGGACGACATTTTGTCATGCTTTTCTTGGCCTAC
GATTTGTTTGTTCTTTTGTGCTTCCTAAATTGATTTGGTTCAGCATTGGA
GAGAAGAGAAATGAAGACGCAAACACAGCATGCTTTTTCATGTATGATTA
CTTGATGGGATCGTAAATGCCGCCATAGATAGACATGGAGAAAAATCGAC
ATTTGCGCAGCTTGTGGGTGTCGGAAGCGGATGTCTTCGTGAGCGATGGA
GTGGACAGAGCGAAAGCATTTCGTTGTATGATACAAATAAATTTCTTTGT
CTACATACGCTCGTTCTACCCTCCTTCCTCCTCCCAACGTCCCTCTTTTC
CTCCTATTTCTGTCCATGCAAGCGGTCGAAAGCTTTGAATCGCTCAAGAC
TTTCCATCGACGTGGTGGACCGACAAGACACCAGAGCCTGCTCCACATCC
TTCCAGCTGATCGCTGGCGGGGGAAGAGGAGAAAGAGGAGGGAGAGAAAG
AAAGGATGTCTTACCACTACTACTGGACGGCTGCTGCTGCTGCTGCTGCT
GTTGCTGTTGCCTGGCCAAAGCATGCAACGCCGCCCTTCTCACCAAATTT
GCCATATCTGCCCCCGAGAAGCCCTCTGTACGTTCCGCCACCTCTTCCTC
TCTCCCTTCCTGGTCATTCTCCTCCCATAACATTTTCTTTTTCAACCCTT
TGAACATTTCCAATCTCTCTTTCTGGTCAGGTAAAGGCACGTACACCAAT
TTGTCAAATCTCCCGGGTCGGAAAAATGCTGGATCAATCGCCTCCGGTGC
ATTCGTGGCCGCCAACACACTCACAAACCCTCTTTCTATCTCTCCCTCCC
TGTCTCCCTCCCCTCCTCCTTCCACCCCTGATCTCAGCTCATCCATACTC
AGAAGCAATTGCGTCGCCAGCCTCGCTCCCCCCCCTCCCCCTTCACCTCC
TCCTCCTCCCCTTGCTGTGAAGAGTGCCTGAAACTCATCAATGAAGACAA
CACACGGCCTGGCTCTCCTGGCAGCTCTCAGAGCCTCTCTCACTATCTCT
TCCCCCCTCCCTACCTCCCCCCTCACCACATCCGATATTTTCAAACTTAA
AAAGCCCGCACCCGTCTGGCAGGCAGCAGCTTTGGCAATCATCGTCTTGC
CGGTCCCGGGTGGTCCGTAAAGGAGAAGACCTGCGGGTGGCTCAAGGCCC
AAGCGACGAAACGCCTTTGGGCGGGCGAGAGGCCATGAAATCATTTCTTG
GACGGCGATTTTGGCGGCCGTCAGTCCCCCTATATCGGACCAGCAGATAG
GAGGGTCGACAGTCGACACAGCAGGGAGGCCTGCGCCGTGTGAGAGTTGC
TTCCTTCGTTCTTCGGTGACTGAAGTTGCTAGTGCTGTGAGCCATGTCTG
GCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGC
AGCCGCAGGAACAGGAGCAGGAGCAGGAGAAAGATGCAGCAGCAGCGGTG
GCAGCCGTGCTACTGATCTTGATATTGTTGCTGTGACTGCTGCTGCTGCT
ACTGCTGTTACTGCTGTTGAGCTGCTGTACAACATACCTTCTTGCCCGTC
GTGCTACAGCTGCAACCCCACCTAGGGTAAACCCTTGACAGCTTCGGGCC
ACGTATTCCAAGTCATCTTGAGTGAGTGTATGCTTATCGGTGGCATGGTG
ATGATGAGAGGCTAATGCATGTGCCTTTTCTTCATCCTCCTCTGGATGCT
GCTGCTCCTTTGGATGCTGCTGCTCCTCTTCCTCCTCCCCGAACTCCCCT
TCCTCTTCCTGCTTGCGAACGAATCCATCCTTGTTCTGGTCCTTGCCTCC
TCGTCCTCCTTTATTTTCTTCTCCACCATGACACGGTGGCTGCTGCTGTT
GCTGCTGTAGACACTGCTCCAAAACCCTCATCCGCGTCTGAATCCTTTCC
TCCCCAGCACGGATACGCATTCTCCTGTCCCGTTTCACCCCTCCCTCCCC
C
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protein sequence of NO27G00840.1

>NO27G00840.1-protein ID=NO27G00840.1-protein|Name=NO27G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MMAANYPSASTYGAVEDPRVHDRTALLKGTIQLTNETNELAAGIGENLRE
QRTSLEDGSTRIREMKGFAGEARRLLNQMARRAACHRVTLWGIIVFLLVC
IGLTVYRLLTNRGHII*
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Synonyms
Publications