NO27G00840.1, NO27G00840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00840.1
Unique Name	NO27G00840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2487
Alignment location	chr27:292394..294994 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:292394..294994 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G00840.1 vs.
Match: EWM20996.1 (hypothetical protein Naga_100081g10 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 8.500e-44
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 0

Query:    1 MMAANYPSASTYGAVEDPRVHDRTALLKGTIQLTNETNELAAGIGENLREQRTSLEDGSTRIREMKGFAGEARRLLNQMARRAACHRVTLWGIIVFLLVCIGLTVYRLLTNRGHII 117
            MMAA+YP+A TYGAVE+  VHDRTALLKGTI+LT ETN+LAAGIGE++R QR +LEDGSTRIREMKGFAGEARR+LNQMARRAA HR TLWGIIVFL +CIGLT+YRL TNRGHII
Sbjct:    1 MMAASYPAAYTYGAVEE--VHDRTALLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII 114

The following BLAST results are available for this feature:

BLAST of NO27G00840.1 vs.

BLAST of NO27G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20996.1	8.500e-44	81.90	hypothetical protein Naga_100081g10 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00840	NO27G00840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00840.1	NO27G00840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00840.1.cds1	NO27G00840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00840.1.cds2	NO27G00840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:292394..294994-
coding sequence from alignment at chr27:292394..294994-

mRNA sequence

>NO27G00840.1 ID=NO27G00840.1|Name=NO27G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp
ACACACAGAGCCGCTGCCGCTGTCGGGAGATGATGGCAGCAAATTATCCT
TCCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGTGCATGATCGTAC
GGCATTGCTCAAGGGCACCATTCAGCTGACGAACGAGACGAATGAGCTGG
CTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGACCTCCTTGGAGGAC
GGGTCGACACGCATACGAGAGATGAAGGGGTTTGCAGGGGAGGCACGGCG
GCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCACCGTGTCACATTGT
GGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCTTGACCGTCTATCGA
CTTCTTACAAATCGCGGGCACATCATATGAGAGCAGAAAGCGAGGGCCAG
GGAGGGGAGACAAGAAAGGCAATTTTGTCCAACCATCGTACATTTAGAAA
ATAATGTAAAACGATAGTAGCAGAGGGAGTGCGTAAAACAGGTGCATGGA
TGAGGACGACATTTTGTCATGCTTTTCTTGGCCTACGATTTGTTTGTTCT
TTTGTGCTTCCTAAATTGATTTGGTTCAGCATTGGAGAGAAGAGAAATGA
AGACGCAAACACAGCATGCTTTTTCATGTATGATTACTTGATGGGATCGT
AAATGCCGCCATAGATAGACATGGAGAAAAATCGACATTTGCGCAGCTTG
TGGGTGTCGGAAGCGGATGTCTTCGTGAGCGATGGAGTGGACAGAGCGAA
AGCATTTCGTTGTATGATACAAATAAATTTCTTTGTCTACATACGCTCGT
TCTACCCTCCTTCCTCCTCCCAACGTCCCTCTTTTCCTCCTATTTCTGTC
CATGCAAGCGGTCGAAAGCTTTGAATCGCTCAAGACTTTCCATCGACGTG
GTGGACCGACAAGACACCAGAGCCTGCTCCACATCCTTCCAGCTGATCGC
TGGCGGGGGAAGAGGAGAAAGAGGAGGGAGAGAAAGAAAGGATGTCTTAC
CACTACTACTGGACGGCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCCTG
GCCAAAGCATGCAACGCCGCCCTTCTCACCAAATTTGCCATATCTGCCCC
CGAGAAGCCCTCTGTACGTTCCGCCACCTCTTCCTCTCTCCCTTCCTGGT
CATTCTCCTCCCATAACATTTTCTTTTTCAACCCTTTGAACATTTCCAAT
CTCTCTTTCTGGTCAGGTAAAGGCACGTACACCAATTTGTCAAATCTCCC
GGGTCGGAAAAATGCTGGATCAATCGCCTCCGGTGCATTCGTGGCCGCCA
ACACACTCACAAACCCTCTTTCTATCTCTCCCTCCCTGTCTCCCTCCCCT
CCTCCTTCCACCCCTGATCTCAGCTCATCCATACTCAGAAGCAATTGCGT
CGCCAGCCTCGCTCCCCCCCCTCCCCCTTCACCTCCTCCTCCTCCCCTTG
CTGTGAAGAGTGCCTGAAACTCATCAATGAAGACAACACACGGCCTGGCT
CTCCTGGCAGCTCTCAGAGCCTCTCTCACTATCTCTTCCCCCCTCCCTAC
CTCCCCCCTCACCACATCCGATATTTTCAAACTTAAAAAGCCCGCACCCG
TCTGGCAGGCAGCAGCTTTGGCAATCATCGTCTTGCCGGTCCCGGGTGGT
CCGTAAAGGAGAAGACCTGCGGGTGGCTCAAGGCCCAAGCGACGAAACGC
CTTTGGGCGGGCGAGAGGCCATGAAATCATTTCTTGGACGGCGATTTTGG
CGGCCGTCAGTCCCCCTATATCGGACCAGCAGATAGGAGGGTCGACAGTC
GACACAGCAGGGAGGCCTGCGCCGTGTGAGAGTTGCTTCCTTCGTTCTTC
GGTGACTGAAGTTGCTAGTGCTGTGAGCCATGTCTGGCAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCCGCAGGAACAG
GAGCAGGAGCAGGAGAAAGATGCAGCAGCAGCGGTGGCAGCCGTGCTACT
GATCTTGATATTGTTGCTGTGACTGCTGCTGCTGCTACTGCTGTTACTGC
TGTTGAGCTGCTGTACAACATACCTTCTTGCCCGTCGTGCTACAGCTGCA
ACCCCACCTAGGGTAAACCCTTGACAGCTTCGGGCCACGTATTCCAAGTC
ATCTTGAGTGAGTGTATGCTTATCGGTGGCATGGTGATGATGAGAGGCTA
ATGCATGTGCCTTTTCTTCATCCTCCTCTGGATGCTGCTGCTCCTTTGGA
TGCTGCTGCTCCTCTTCCTCCTCCCCGAACTCCCCTTCCTCTTCCTGCTT
GCGAACGAATCCATCCTTGTTCTGGTCCTTGCCTCCTCGTCCTCCTTTAT
TTTCTTCTCCACCATGACACGGTGGCTGCTGCTGTTGCTGCTGTAGACAC
TGCTCCAAAACCCTCATCCGCGTCTGAATCCTTTCCTCCCCAGCACGGAT
ACGCATTCTCCTGTCCCGTTTCACCCCTCCCTCCCCC

protein sequence of NO27G00840.1

>NO27G00840.1-protein ID=NO27G00840.1-protein|Name=NO27G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MMAANYPSASTYGAVEDPRVHDRTALLKGTIQLTNETNELAAGIGENLRE
QRTSLEDGSTRIREMKGFAGEARRLLNQMARRAACHRVTLWGIIVFLLVC
IGLTVYRLLTNRGHII*

mRNA from alignment at chr27:292394..294994-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00840.1 ID=NO27G00840.1|Name=NO27G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp|location=Sequence derived from alignment at chr27:292394..294994- (Nannochloropsis oceanica)
ACACACAGAGCCGCTGCCGCTGTCGGGAGATGATGGCAGCAAATTATCCT
TCCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGTGGTAAGTCCTCA
TCTCTTTCCGACCTCCCCACCCCGGCCATGCCGCTTGTCTGACTAGTGTT
GTCGTCTTGCGGCACGAATTAACGGTCATGCTCACACACCTATACTCTCA
CAGCATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGACGAACGA
GACGAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGA
CCTCCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGGGTTTGCA
GGGGAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCA
CCGTGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCT
TGACCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATGAGAGCAG
AAAGCGAGGGCCAGGGAGGGGAGACAAGAAAGGCAATTTTGTCCAACCAT
CGTACATTTAGAAAATAATGTAAAACGATAGTAGCAGAGGGAGTGCGTAA
AACAGGTGCATGGATGAGGACGACATTTTGTCATGCTTTTCTTGGCCTAC
GATTTGTTTGTTCTTTTGTGCTTCCTAAATTGATTTGGTTCAGCATTGGA
GAGAAGAGAAATGAAGACGCAAACACAGCATGCTTTTTCATGTATGATTA
CTTGATGGGATCGTAAATGCCGCCATAGATAGACATGGAGAAAAATCGAC
ATTTGCGCAGCTTGTGGGTGTCGGAAGCGGATGTCTTCGTGAGCGATGGA
GTGGACAGAGCGAAAGCATTTCGTTGTATGATACAAATAAATTTCTTTGT
CTACATACGCTCGTTCTACCCTCCTTCCTCCTCCCAACGTCCCTCTTTTC
CTCCTATTTCTGTCCATGCAAGCGGTCGAAAGCTTTGAATCGCTCAAGAC
TTTCCATCGACGTGGTGGACCGACAAGACACCAGAGCCTGCTCCACATCC
TTCCAGCTGATCGCTGGCGGGGGAAGAGGAGAAAGAGGAGGGAGAGAAAG
AAAGGATGTCTTACCACTACTACTGGACGGCTGCTGCTGCTGCTGCTGCT
GTTGCTGTTGCCTGGCCAAAGCATGCAACGCCGCCCTTCTCACCAAATTT
GCCATATCTGCCCCCGAGAAGCCCTCTGTACGTTCCGCCACCTCTTCCTC
TCTCCCTTCCTGGTCATTCTCCTCCCATAACATTTTCTTTTTCAACCCTT
TGAACATTTCCAATCTCTCTTTCTGGTCAGGTAAAGGCACGTACACCAAT
TTGTCAAATCTCCCGGGTCGGAAAAATGCTGGATCAATCGCCTCCGGTGC
ATTCGTGGCCGCCAACACACTCACAAACCCTCTTTCTATCTCTCCCTCCC
TGTCTCCCTCCCCTCCTCCTTCCACCCCTGATCTCAGCTCATCCATACTC
AGAAGCAATTGCGTCGCCAGCCTCGCTCCCCCCCCTCCCCCTTCACCTCC
TCCTCCTCCCCTTGCTGTGAAGAGTGCCTGAAACTCATCAATGAAGACAA
CACACGGCCTGGCTCTCCTGGCAGCTCTCAGAGCCTCTCTCACTATCTCT
TCCCCCCTCCCTACCTCCCCCCTCACCACATCCGATATTTTCAAACTTAA
AAAGCCCGCACCCGTCTGGCAGGCAGCAGCTTTGGCAATCATCGTCTTGC
CGGTCCCGGGTGGTCCGTAAAGGAGAAGACCTGCGGGTGGCTCAAGGCCC
AAGCGACGAAACGCCTTTGGGCGGGCGAGAGGCCATGAAATCATTTCTTG
GACGGCGATTTTGGCGGCCGTCAGTCCCCCTATATCGGACCAGCAGATAG
GAGGGTCGACAGTCGACACAGCAGGGAGGCCTGCGCCGTGTGAGAGTTGC
TTCCTTCGTTCTTCGGTGACTGAAGTTGCTAGTGCTGTGAGCCATGTCTG
GCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGC
AGCCGCAGGAACAGGAGCAGGAGCAGGAGAAAGATGCAGCAGCAGCGGTG
GCAGCCGTGCTACTGATCTTGATATTGTTGCTGTGACTGCTGCTGCTGCT
ACTGCTGTTACTGCTGTTGAGCTGCTGTACAACATACCTTCTTGCCCGTC
GTGCTACAGCTGCAACCCCACCTAGGGTAAACCCTTGACAGCTTCGGGCC
ACGTATTCCAAGTCATCTTGAGTGAGTGTATGCTTATCGGTGGCATGGTG
ATGATGAGAGGCTAATGCATGTGCCTTTTCTTCATCCTCCTCTGGATGCT
GCTGCTCCTTTGGATGCTGCTGCTCCTCTTCCTCCTCCCCGAACTCCCCT
TCCTCTTCCTGCTTGCGAACGAATCCATCCTTGTTCTGGTCCTTGCCTCC
TCGTCCTCCTTTATTTTCTTCTCCACCATGACACGGTGGCTGCTGCTGTT
GCTGCTGTAGACACTGCTCCAAAACCCTCATCCGCGTCTGAATCCTTTCC
TCCCCAGCACGGATACGCATTCTCCTGTCCCGTTTCACCCCTCCCTCCCC
C

Coding sequence (CDS) from alignment at chr27:292394..294994-

>NO27G00840.1 ID=NO27G00840.1|Name=NO27G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at chr27:292394..294994- (Nannochloropsis oceanica)
ATGATGGCAGCAAATTATCCTTCCGCGTCCACGTACGGTGCCGTGGAGGA
TCCGCGTGTGCATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGA
CGAACGAGACGAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAA
CAACGGACCTCCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGG
GTTTGCAGGGGAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAG
CTTGCCACCGTGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGT
ATCGGCTTGACCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATG
A

Synonyms

Publications