NO27G00830, NO27G00830 (gene) Nannochloropsis oceanica

Overview
NameNO27G00830
Unique NameNO27G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr27:290672..292410 +

Link to JBrowse

Properties
Property NameValue
DescriptionCell division control protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:290672..292410 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Vocabulary: Biological Process
TermDefinition
GO:0051301cell division
Homology
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BLAST of NO27G00830 vs. NCBI_GenBank
Match: EWM21012.1 (cell division control protein [Nannochloropsis gaditana])

HSP 1 Score: 230.7 bits (587), Expect = 8.100e-57
Identity = 165/416 (39.66%), Postives = 208/416 (50.00%), Query Frame = 0 
Query:    1 MDGLRLRLEHNGAPLLPRQDS---SPSYLISPITVLLITPLPISKNSFCDSPLKSFLFPPPESVLHRLLLGRRVPTTGEVVLTLTLSXXXXXXXXXXXXXXEGRRICVRYSVVVHRVWEYANGADGMGRSAFGGEKGGXXXXEEKGRERYYTFQKPAEGLVTPQTHLLINGQTCRWLFPHPTAPCTXXXXXXXXXXXXXXXXXXXWTSYLGKNTEDTNNSNSGARILPSDPSLLDELCLRXXXXXXXXXXXXXXXXXXXXXXXIRGSHFKAPGIILIEGPPGCGKTSLVAAAAQALNLCTVIITPGHLLASHDVHADNALNAAAAAATSLGPALLLIDNVDLMIFGGGGREGGRDGGVMRTSRGDVDRGLERWLARVEELGGLEG--GGERDCGS--GRVVVVMTARTGWRGGREG 410
            +D + + LE  G  +   +++   +P YL+ PIT LL+TPL ++  S    PL    F P ESVL  LLLGRRVP +GEV L L L                    C RYS+VVHR W Y         SA+   K G    E+ G+       +P  GLVTP T +L+ GQTC WL P                          W S+LG           G  +LPSDP +L E+C R                          +  +APG++L++GP G GKT+LV AAA AL L TV++ PG L+A HDV AD AL  AAAAA  +GPALLL+DNVDL++ G G R       V+  SRG+VD  L RW+ARV E  G EG  G    CG   GRV+VVMTAR+GW  G  G
Sbjct:    3 VDNIHVHLEQGGITVPSVEETVPFAPCYLLPPITALLLTPLRVADGSI---PLP---FLPSESVLLHLLLGRRVPASGEVTLLLFLGDEKDDQGVEPPPLCP----CARYSMVVHRTWVY-------DESAWSTIKEGAPCSEKGGQPGGKAAPEPPVGLVTPGTRVLVQGQTCDWLAP----------------------DREVWESFLG----------PGVGLLPSDPPVLTEMCARIKRGLGLGPRVGGGRAL---------AREQAPGLVLLDGPSGSGKTALVRAAALALGLVTVLVRPGGLMARHDVEADQALERAAAAAAVMGPALLLLDNVDLLVPGVGSR-------VIGASRGEVDGSLARWVARVGEREGWEGSPGWSSPCGGKPGRVMVVMTARSGWCPGLFG 353
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BLAST of NO27G00830 vs. NCBI_GenBank
Match: KNE65877.1 (hypothetical protein AMAG_09841 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7
Identity = 46/130 (35.38%), Postives = 64/130 (49.23%), Query Frame = 0 
Query:  268 APGIILIEGPPGCGKTSLVAAAAQALNLCTVIITPGHLLASHDVHADNALNAAAAAATSLGPALLLIDNVDLMIFGGGGREGGRDGGVMRTSRGDVDRGLERWLAR-VEELGGLEGGGERDCGSGRVVVV 397
            AP  +L+ GPPGC KT+ V   A  L      ++P  +  SH   A+  +  A   A    P+LL +D +D ++ G  G  GG  GG      G+ D   ER L   + E+ G+EGGGE +     VVVV
Sbjct:  145 APRGLLLYGPPGCSKTTFVRVLASHLKASFFTLSPADIFGSHVGEAEATIRGAFHRARLAAPSLLFLDEIDTLV-GSRGLTGGSSGG------GESDPTRERVLTTLLNEMDGIEGGGEGEALGKNVVVV 267
The following BLAST results are available for this feature:
BLAST of NO27G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21012.18.100e-5739.66cell division control protein [Nannochloropsis gad... [more]
KNE65877.12.000e-735.38hypothetical protein AMAG_09841 [Allomyces macrogy... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005089NSK005089Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00830.1NO27G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673608gene_8672Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100081g9gene9413Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00830.1NO27G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00830 ID=NO27G00830|Name=NO27G00830|organism=Nannochloropsis oceanica|type=gene|length=1739bp
CGCGTTTTGCTTTTGCTTTGCAAGCAGAGCTTTCCTTGAGTCATTCGTGT
ATCTTTCTCCTGCAGACAGGAAATAATGACGAACAATATCTCAACAATCC
TGACATACTGCTGGCCCTGCCACTGACGCTGCTTGTGGCTTTATCAATGC
TTAATGGCTCAAAATTAACCTCCTCCCCCCTTCAATCCTTCCCTCGCTTT
CCACCCTCACACAATCCCACAGCATATGCCTGGTGTTCCCCCGCAAATAA
CGGGGCCATTACTGGCCCTAAGTGCAGCCGTTTTATTGAGCGTGGCATTG
AAAGAAGCGTTGGACAGGAAGGACGGAAAACAACGGGTCAAAATCCCTTT
GCACAATCCGAGGGCTTTCCGCTTCGAGTTGCCGAGCACTGCCTCCTCAT
CCGCAGCTTCCTCGTCCTCGTCATCGTCGTCGTCTGGACAGACGAAGTAA
TAAAAGGAAGATAAAAATCTATAAAGCATCGCGGTCCATCTCCCCTCTGC
CGGAAATAAATGGATGGGCTCCGTCTCCGTCTCGAACATAATGGCGCCCC
GCTTCTTCCGCGCCAAGACTCCTCCCCTTCCTACCTCATATCCCCCATCA
CCGTCCTCCTCATCACACCTTTGCCCATTTCCAAAAATTCATTTTGTGAC
TCCCCACTCAAGTCGTTTCTTTTTCCACCGCCCGAGAGCGTTCTTCATCG
TTTGTTGCTCGGGCGCCGGGTGCCAACCACAGGAGAGGTGGTATTAACCT
TGACTCTCTCCTGTGGAAACGAGGAAGAGGATGACAATGAGAGGGAGAAA
GAAGAGGGACGGAGGATATGTGTGAGGTATAGTGTGGTGGTACACCGTGT
GTGGGAGTATGCTAATGGTGCGGATGGGATGGGGAGGAGTGCCTTCGGAG
GAGAAAAAGGAGGAGGAAAAAGAGGAGAAGAAAAAGGAAGAGAGAGATAC
TATACTTTCCAAAAACCGGCTGAAGGTCTAGTGACCCCCCAAACACATCT
CCTCATCAATGGCCAAACCTGCCGCTGGCTATTCCCCCATCCCACCGCCC
CTTGTACTCCTCCCTCCACTCCCCCAGCTTCTTCACCACCACCACCACCA
CCACCAACCGCAAGCTGGACCTCCTACCTAGGGAAAAACACTGAGGACAC
CAATAATAGCAACAGTGGTGCGAGAATTCTACCCTCCGACCCCTCTCTCC
TCGACGAGCTTTGTTTACGGATGCGACTCGCATTACAGCTTCCAGCCCCT
CCTCCTAACCCGCAGCAGCAACAACAGCAGCAGCAAGCCATACGGGGATC
ACACTTTAAGGCCCCTGGTATTATCCTGATCGAAGGCCCCCCCGGCTGTG
GAAAAACGTCCCTAGTGGCAGCAGCAGCCCAAGCTCTCAATCTCTGCACC
GTCATCATCACCCCTGGCCACCTCCTCGCATCTCACGATGTACATGCCGA
CAATGCCTTAAATGCTGCTGCTGCTGCTGCTACTTCCCTCGGCCCCGCGT
TGTTGTTGATAGATAATGTCGATTTGATGATTTTTGGAGGTGGAGGGAGG
GAGGGAGGGAGGGATGGAGGGGTGATGCGTACAAGCAGGGGAGATGTGGA
CCGAGGCTTAGAGCGGTGGCTAGCGCGAGTGGAAGAGCTTGGAGGGCTGG
AGGGCGGGGGGGAGAGAGACTGTGGATCAGGGAGGGTTGTGGTGGTGATG
ACGGCGAGGACGGGGTGGAGGGGGGGGAGGGAGGGGTGA
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protein sequence of NO27G00830.1

>NO27G00830.1-protein ID=NO27G00830.1-protein|Name=NO27G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MDGLRLRLEHNGAPLLPRQDSSPSYLISPITVLLITPLPISKNSFCDSPL
KSFLFPPPESVLHRLLLGRRVPTTGEVVLTLTLSCGNEEEDDNEREKEEG
RRICVRYSVVVHRVWEYANGADGMGRSAFGGEKGGGKRGEEKGRERYYTF
QKPAEGLVTPQTHLLINGQTCRWLFPHPTAPCTPPSTPPASSPPPPPPPT
ASWTSYLGKNTEDTNNSNSGARILPSDPSLLDELCLRMRLALQLPAPPPN
PQQQQQQQQAIRGSHFKAPGIILIEGPPGCGKTSLVAAAAQALNLCTVII
TPGHLLASHDVHADNALNAAAAAATSLGPALLLIDNVDLMIFGGGGREGG
RDGGVMRTSRGDVDRGLERWLARVEELGGLEGGGERDCGSGRVVVVMTAR
TGWRGGREG*
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Synonyms
Publications