NO27G00830.1, NO27G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00830.1
Unique NameNO27G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr27:290672..292410 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:290672..292410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00830.1 vs.
Match: EWM21012.1 (cell division control protein [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 1.100e-58
Identity = 170/416 (40.87%), Postives = 220/416 (52.88%), Query Frame = 0 
Query:    1 MDGLRLRLEHNGAPLLPRQDS---SPSYLISPITVLLITPLPISKNSFCDSPLKSFLFPPPESVLHRLLLGRRVPTTGEVVLTLTLSCGNEEEDDNEREKEEGRRICVRYSVVVHRVWEYANGADGMGRSAFGGEKGGGKRGEEKGRERYYTFQKPAEGLVTPQTHLLINGQTCRWLFPHPTAPCTPPSTPPASSPPPPPPPTASWTSYLGKNTEDTNNSNSGARILPSDPSLLDELCLRMRLALQLPAPPPNPQQQQQQQQAIRGSHFKAPGIILIEGPPGCGKTSLVAAAAQALNLCTVIITPGHLLASHDVHADNALNAAAAAATSLGPALLLIDNVDLMIFGGGGREGGRDGGVMRTSRGDVDRGLERWLARVEELGGLEG--GGERDCGS--GRVVVVMTARTGWRGGREG 410
            +D + + LE  G  +   +++   +P YL+ PIT LL+TPL ++  S    PL    F P ESVL  LLLGRRVP +GEV L L L     +E D++  +      C RYS+VVHR W Y         SA+   K G    E+ G+       +P  GLVTP T +L+ GQTC WL P                          W S+LG           G  +LPSDP +L E+C R++  L L       +   ++Q         APG++L++GP G GKT+LV AAA AL L TV++ PG L+A HDV AD AL  AAAAA  +GPALLL+DNVDL++ G G R       V+  SRG+VD  L RW+ARV E  G EG  G    CG   GRV+VVMTAR+GW  G  G
Sbjct:    3 VDNIHVHLEQGGITVPSVEETVPFAPCYLLPPITALLLTPLRVADGSI---PLP---FLPSESVLLHLLLGRRVPASGEVTLLLFLG----DEKDDQGVEPPPLCPCARYSMVVHRTWVY-------DESAWSTIKEGAPCSEKGGQPGGKAAPEPPVGLVTPGTRVLVQGQTCDWLAPDREV----------------------WESFLGP----------GVGLLPSDPPVLTEMCARIKRGLGLGPRVGGGRALAREQ---------APGLVLLDGPSGSGKTALVRAAALALGLVTVLVRPGGLMARHDVEADQALERAAAAAAVMGPALLLLDNVDLLVPGVGSR-------VIGASRGEVDGSLARWVARVGEREGWEGSPGWSSPCGGKPGRVMVVMTARSGWCPGLFG 353
The following BLAST results are available for this feature:
BLAST of NO27G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21012.11.100e-5840.87cell division control protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00830NO27G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00830.1NO27G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00830.1.cds1NO27G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00830.1 ID=NO27G00830.1|Name=NO27G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp
CGCGTTTTGCTTTTGCTTTGCAAGCAGAGCTTTCCTTGAGTCATTCGTGT
ATCTTTCTCCTGCAGACAGGAAATAATGACGAACAATATCTCAACAATCC
TGACATACTGCTGGCCCTGCCACTGACGCTGCTTGTGGCTTTATCAATGC
TTAATGGCTCAAAATTAACCTCCTCCCCCCTTCAATCCTTCCCTCGCTTT
CCACCCTCACACAATCCCACAGCATATGCCTGGTGTTCCCCCGCAAATAA
CGGGGCCATTACTGGCCCTAAGTGCAGCCGTTTTATTGAGCGTGGCATTG
AAAGAAGCGTTGGACAGGAAGGACGGAAAACAACGGGTCAAAATCCCTTT
GCACAATCCGAGGGCTTTCCGCTTCGAGTTGCCGAGCACTGCCTCCTCAT
CCGCAGCTTCCTCGTCCTCGTCATCGTCGTCGTCTGGACAGACGAAGTAA
TAAAAGGAAGATAAAAATCTATAAAGCATCGCGGTCCATCTCCCCTCTGC
CGGAAATAAATGGATGGGCTCCGTCTCCGTCTCGAACATAATGGCGCCCC
GCTTCTTCCGCGCCAAGACTCCTCCCCTTCCTACCTCATATCCCCCATCA
CCGTCCTCCTCATCACACCTTTGCCCATTTCCAAAAATTCATTTTGTGAC
TCCCCACTCAAGTCGTTTCTTTTTCCACCGCCCGAGAGCGTTCTTCATCG
TTTGTTGCTCGGGCGCCGGGTGCCAACCACAGGAGAGGTGGTATTAACCT
TGACTCTCTCCTGTGGAAACGAGGAAGAGGATGACAATGAGAGGGAGAAA
GAAGAGGGACGGAGGATATGTGTGAGGTATAGTGTGGTGGTACACCGTGT
GTGGGAGTATGCTAATGGTGCGGATGGGATGGGGAGGAGTGCCTTCGGAG
GAGAAAAAGGAGGAGGAAAAAGAGGAGAAGAAAAAGGAAGAGAGAGATAC
TATACTTTCCAAAAACCGGCTGAAGGTCTAGTGACCCCCCAAACACATCT
CCTCATCAATGGCCAAACCTGCCGCTGGCTATTCCCCCATCCCACCGCCC
CTTGTACTCCTCCCTCCACTCCCCCAGCTTCTTCACCACCACCACCACCA
CCACCAACCGCAAGCTGGACCTCCTACCTAGGGAAAAACACTGAGGACAC
CAATAATAGCAACAGTGGTGCGAGAATTCTACCCTCCGACCCCTCTCTCC
TCGACGAGCTTTGTTTACGGATGCGACTCGCATTACAGCTTCCAGCCCCT
CCTCCTAACCCGCAGCAGCAACAACAGCAGCAGCAAGCCATACGGGGATC
ACACTTTAAGGCCCCTGGTATTATCCTGATCGAAGGCCCCCCCGGCTGTG
GAAAAACGTCCCTAGTGGCAGCAGCAGCCCAAGCTCTCAATCTCTGCACC
GTCATCATCACCCCTGGCCACCTCCTCGCATCTCACGATGTACATGCCGA
CAATGCCTTAAATGCTGCTGCTGCTGCTGCTACTTCCCTCGGCCCCGCGT
TGTTGTTGATAGATAATGTCGATTTGATGATTTTTGGAGGTGGAGGGAGG
GAGGGAGGGAGGGATGGAGGGGTGATGCGTACAAGCAGGGGAGATGTGGA
CCGAGGCTTAGAGCGGTGGCTAGCGCGAGTGGAAGAGCTTGGAGGGCTGG
AGGGCGGGGGGGAGAGAGACTGTGGATCAGGGAGGGTTGTGGTGGTGATG
ACGGCGAGGACGGGGTGGAGGGGGGGGAGGGAGGGGTGA
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protein sequence of NO27G00830.1

>NO27G00830.1-protein ID=NO27G00830.1-protein|Name=NO27G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MDGLRLRLEHNGAPLLPRQDSSPSYLISPITVLLITPLPISKNSFCDSPL
KSFLFPPPESVLHRLLLGRRVPTTGEVVLTLTLSCGNEEEDDNEREKEEG
RRICVRYSVVVHRVWEYANGADGMGRSAFGGEKGGGKRGEEKGRERYYTF
QKPAEGLVTPQTHLLINGQTCRWLFPHPTAPCTPPSTPPASSPPPPPPPT
ASWTSYLGKNTEDTNNSNSGARILPSDPSLLDELCLRMRLALQLPAPPPN
PQQQQQQQQAIRGSHFKAPGIILIEGPPGCGKTSLVAAAAQALNLCTVII
TPGHLLASHDVHADNALNAAAAAATSLGPALLLIDNVDLMIFGGGGREGG
RDGGVMRTSRGDVDRGLERWLARVEELGGLEGGGERDCGSGRVVVVMTAR
TGWRGGREG*
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mRNA from alignment at chr27:290672..292410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00830.1 ID=NO27G00830.1|Name=NO27G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp|location=Sequence derived from alignment at chr27:290672..292410+ (Nannochloropsis oceanica)
CGCGTTTTGCTTTTGCTTTGCAAGCAGAGCTTTCCTTGAGTCATTCGTGT
ATCTTTCTCCTGCAGACAGGAAATAATGACGAACAATATCTCAACAATCC
TGACATACTGCTGGCCCTGCCACTGACGCTGCTTGTGGCTTTATCAATGC
TTAATGGCTCAAAATTAACCTCCTCCCCCCTTCAATCCTTCCCTCGCTTT
CCACCCTCACACAATCCCACAGCATATGCCTGGTGTTCCCCCGCAAATAA
CGGGGCCATTACTGGCCCTAAGTGCAGCCGTTTTATTGAGCGTGGCATTG
AAAGAAGCGTTGGACAGGAAGGACGGAAAACAACGGGTCAAAATCCCTTT
GCACAATCCGAGGGCTTTCCGCTTCGAGTTGCCGAGCACTGCCTCCTCAT
CCGCAGCTTCCTCGTCCTCGTCATCGTCGTCGTCTGGACAGACGAAGTAA
TAAAAGGAAGATAAAAATCTATAAAGCATCGCGGTCCATCTCCCCTCTGC
CGGAAATAAATGGATGGGCTCCGTCTCCGTCTCGAACATAATGGCGCCCC
GCTTCTTCCGCGCCAAGACTCCTCCCCTTCCTACCTCATATCCCCCATCA
CCGTCCTCCTCATCACACCTTTGCCCATTTCCAAAAATTCATTTTGTGAC
TCCCCACTCAAGTCGTTTCTTTTTCCACCGCCCGAGAGCGTTCTTCATCG
TTTGTTGCTCGGGCGCCGGGTGCCAACCACAGGAGAGGTGGTATTAACCT
TGACTCTCTCCTGTGGAAACGAGGAAGAGGATGACAATGAGAGGGAGAAA
GAAGAGGGACGGAGGATATGTGTGAGGTATAGTGTGGTGGTACACCGTGT
GTGGGAGTATGCTAATGGTGCGGATGGGATGGGGAGGAGTGCCTTCGGAG
GAGAAAAAGGAGGAGGAAAAAGAGGAGAAGAAAAAGGAAGAGAGAGATAC
TATACTTTCCAAAAACCGGCTGAAGGTCTAGTGACCCCCCAAACACATCT
CCTCATCAATGGCCAAACCTGCCGCTGGCTATTCCCCCATCCCACCGCCC
CTTGTACTCCTCCCTCCACTCCCCCAGCTTCTTCACCACCACCACCACCA
CCACCAACCGCAAGCTGGACCTCCTACCTAGGGAAAAACACTGAGGACAC
CAATAATAGCAACAGTGGTGCGAGAATTCTACCCTCCGACCCCTCTCTCC
TCGACGAGCTTTGTTTACGGATGCGACTCGCATTACAGCTTCCAGCCCCT
CCTCCTAACCCGCAGCAGCAACAACAGCAGCAGCAAGCCATACGGGGATC
ACACTTTAAGGCCCCTGGTATTATCCTGATCGAAGGCCCCCCCGGCTGTG
GAAAAACGTCCCTAGTGGCAGCAGCAGCCCAAGCTCTCAATCTCTGCACC
GTCATCATCACCCCTGGCCACCTCCTCGCATCTCACGATGTACATGCCGA
CAATGCCTTAAATGCTGCTGCTGCTGCTGCTACTTCCCTCGGCCCCGCGT
TGTTGTTGATAGATAATGTCGATTTGATGATTTTTGGAGGTGGAGGGAGG
GAGGGAGGGAGGGATGGAGGGGTGATGCGTACAAGCAGGGGAGATGTGGA
CCGAGGCTTAGAGCGGTGGCTAGCGCGAGTGGAAGAGCTTGGAGGGCTGG
AGGGCGGGGGGGAGAGAGACTGTGGATCAGGGAGGGTTGTGGTGGTGATG
ACGGCGAGGACGGGGTGGAGGGGGGGGAGGGAGGGGTGA
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Coding sequence (CDS) from alignment at chr27:290672..292410+

>NO27G00830.1 ID=NO27G00830.1|Name=NO27G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr27:290672..292410+ (Nannochloropsis oceanica)
ATGGATGGGCTCCGTCTCCGTCTCGAACATAATGGCGCCCCGCTTCTTCC
GCGCCAAGACTCCTCCCCTTCCTACCTCATATCCCCCATCACCGTCCTCC
TCATCACACCTTTGCCCATTTCCAAAAATTCATTTTGTGACTCCCCACTC
AAGTCGTTTCTTTTTCCACCGCCCGAGAGCGTTCTTCATCGTTTGTTGCT
CGGGCGCCGGGTGCCAACCACAGGAGAGGTGGTATTAACCTTGACTCTCT
CCTGTGGAAACGAGGAAGAGGATGACAATGAGAGGGAGAAAGAAGAGGGA
CGGAGGATATGTGTGAGGTATAGTGTGGTGGTACACCGTGTGTGGGAGTA
TGCTAATGGTGCGGATGGGATGGGGAGGAGTGCCTTCGGAGGAGAAAAAG
GAGGAGGAAAAAGAGGAGAAGAAAAAGGAAGAGAGAGATACTATACTTTC
CAAAAACCGGCTGAAGGTCTAGTGACCCCCCAAACACATCTCCTCATCAA
TGGCCAAACCTGCCGCTGGCTATTCCCCCATCCCACCGCCCCTTGTACTC
CTCCCTCCACTCCCCCAGCTTCTTCACCACCACCACCACCACCACCAACC
GCAAGCTGGACCTCCTACCTAGGGAAAAACACTGAGGACACCAATAATAG
CAACAGTGGTGCGAGAATTCTACCCTCCGACCCCTCTCTCCTCGACGAGC
TTTGTTTACGGATGCGACTCGCATTACAGCTTCCAGCCCCTCCTCCTAAC
CCGCAGCAGCAACAACAGCAGCAGCAAGCCATACGGGGATCACACTTTAA
GGCCCCTGGTATTATCCTGATCGAAGGCCCCCCCGGCTGTGGAAAAACGT
CCCTAGTGGCAGCAGCAGCCCAAGCTCTCAATCTCTGCACCGTCATCATC
ACCCCTGGCCACCTCCTCGCATCTCACGATGTACATGCCGACAATGCCTT
AAATGCTGCTGCTGCTGCTGCTACTTCCCTCGGCCCCGCGTTGTTGTTGA
TAGATAATGTCGATTTGATGATTTTTGGAGGTGGAGGGAGGGAGGGAGGG
AGGGATGGAGGGGTGATGCGTACAAGCAGGGGAGATGTGGACCGAGGCTT
AGAGCGGTGGCTAGCGCGAGTGGAAGAGCTTGGAGGGCTGGAGGGCGGGG
GGGAGAGAGACTGTGGATCAGGGAGGGTTGTGGTGGTGATGACGGCGAGG
ACGGGGTGGAGGGGGGGGAGGGAGGGGTGA
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Synonyms
Publications