NO27G00630, NO27G00630 (gene) Nannochloropsis oceanica

Overview
NameNO27G00630
Unique NameNO27G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1561
Alignment locationchr27:230015..231575 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:230015..231575 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO27G00630 vs. NCBI_GenBank
Match: EWM21031.1 (hypothetical protein Naga_100478g2 [Nannochloropsis gaditana])

HSP 1 Score: 71.2 bits (173), Expect = 7.300e-9
Identity = 119/353 (33.71%), Postives = 158/353 (44.76%), Query Frame = 0 
Query:   20 YKSISS----------STPP-PFSSPTLIRTDMTIDPPIENTITQPSYSLWAQGNTNTNGHSFFFIRVAQVFLLIAATALMTAWLLLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFASLKLGEYLIFFSALCVFLSLFSYACGVSHHALTRLCT----------------HDASTLPALPQFPPSNVTV------AGSVTAAAAVPEVDVLPSPQSIPPLPPHXXXXXXXXXXXXXXXXXXXXXXPSEISCTQLQSDPCHSLLLSLPPSLRPSAQCFSSTTPPSAQGRDLSTHAGIWSLVFFTFLLLLFTGKVWTEVMGII 340
            Y+SIS+          STP  P +SP L+RTD     P+E  + Q SY+LWAQGN   +G + +    AQ FL++A             XXXXXXXXXXXXXXXXXXXXXXXX                                    +LKLG   +  +ALC+ L++ ++A GVS  AL+ +C                 H +  +P+ P  PP  VT       A S TA A+ P     P P + P   P                          ++C QL +DPC S   SL P   P + C   T PPS     +S H G+WSL+ F  LLL+ TG+VW E+ G++
Sbjct:   96 YRSISTQQVATNLYMESTPANPTTSPVLVRTDFVDQTPVEQVVIQKSYALWAQGN-RADGRAVY---AAQSFLVLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLS---------------------------------RTLKLGRGAVVAAALCILLTVMTWAWGVSPQALSHMCVQAGESHLLPVLRSQSRHSSPGVPSSPLSPP-RVTAPFQGLPASSFTALASQPPT---PWPLTKPSTTP--------------------------VTCWQLANDPC-SAFDSLHP---PPSSCI--TRPPS-----VSLHGGLWSLMLFVALLLVLTGRVWKELEGMV 370
The following BLAST results are available for this feature:
BLAST of NO27G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21031.17.300e-933.71hypothetical protein Naga_100478g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00630.1NO27G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100478g2gene9395Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00630.1NO27G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00630 ID=NO27G00630|Name=NO27G00630|organism=Nannochloropsis oceanica|type=gene|length=1561bp
ATGAGCATTTATGCGCCCTCCGACGGCAGCAGCAGCAGCGATCATGTCAG
AGACAACTATAAAAGCATCAGCAGCAGCACCCCTCCTCCTTTCTCATCGC
CGACACTAATTCGCACAGATATGACAATCGACCCTCCCATAGAAAACACA
ATTACCCAACCATCCTACTCCCTCTGGGCACAAGGCAACACCAACACCAA
CGGCCACAGTTTCTTCTTCATAAGGGTAGCACAAGTTTTTCTTCTCATCG
CCGCCACTGCTTTGATGACTGCTTGGCTTCTACTATTCAAAGGACTACGT
GCCCCTCCTCCTCCCCCTCTTCTTCCTCCTCCTCCCCCCCCTCCTCCTCC
TCAGCGATCGCCTTTCCCCCTCTTATTTCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCATCATCATCATCAACATCATCGAAATACGAAC
ACGAACAAGAAGGCTTTCGCTAGTTTAAAGCTAGGAGAATATCTTATCTT
CTTCTCTGCTCTATGTGTCTTCCTCTCCTTATTCTCCTATGCGTGCGGAG
TTTCCCATCATGCCCTTACCCGTCTCTGCACGCATGACGCTTCTACTCTC
CCTGCCCTTCCACAATTTCCTCCTTCGAATGTGACGGTTGCTGGTTCTGT
TACTGCTGCTGCTGCGGTGCCGGAGGTCGATGTGCTTCCTTCTCCTCAAT
CCATTCCTCCTTTACCTCCTCATAAGTTTCTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTCCTCCCGCTTTTTCCTCTTCTCCTTCAGAAAT
TTCTTGCACCCAGCTCCAATCCGACCCCTGCCACTCCCTCCTCCTCTCCC
TCCCTCCATCCCTCCGGCCTTCAGCACAGTGCTTTAGCAGCACCACCCCT
CCTTCGGCCCAAGGTAGGGACCTAAGCACACACGCAGGAATTTGGTCGTT
GGTCTTCTTTACGTTCTTGTTGCTGTTGTTCACGGGGAAGGTATGGACAG
AGGTAATGGGGATTATAGAAGGAACAGCAGCAGCAGAAGAAGAAGAGGAA
GAAAGGTTGAACTCGCCGCTGTTGAGAGGACAGTATGAATAGGTGGAGAC
GAGGAAGAGGAAGAGGAGGAAAAAGTGAGCCAAAATGATTTTAGATAAGT
AAAAAAAACGGGGAAGGAGGGGAAAAGAGAAAATATAAATATCGCTCACA
AAAGATGTGAATGATATTCATTCATATGTATACTATGTATACATAGGTAT
GTATTAAAGGAGAGAATAAATCAAGAACAGGAAGCAAAAACGCCACACTT
GAAGTGAAAATATCACAATCGTTCTCGAGGCCGCGCGGCCTGACCGTTAG
CCGTTAGTGGAACCATTGATAGGTTGCAGCTTCAAATGTACGATACGTAT
AATGGGCTCTGGTAAATAAAATACAAGGCGATGGAAGAAATCATACAACA
TATTTATGACAATATACTGCAAATGACAATAAATAAAGTTAAATGAAAGG
GGAAGTACGTCACCAATTCATCTCATCCGATCAATCACCAAAGGCGTGTA
TGGCGTGTATG
back to top

protein sequence of NO27G00630.1

>NO27G00630.1-protein ID=NO27G00630.1-protein|Name=NO27G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MSIYAPSDGSSSSDHVRDNYKSISSSTPPPFSSPTLIRTDMTIDPPIENT
ITQPSYSLWAQGNTNTNGHSFFFIRVAQVFLLIAATALMTAWLLLFKGLR
APPPPPLLPPPPPPPPPQRSPFPLLFQQQQQQQQQQQQHHHHHQHHRNTN
TNKKAFASLKLGEYLIFFSALCVFLSLFSYACGVSHHALTRLCTHDASTL
PALPQFPPSNVTVAGSVTAAAAVPEVDVLPSPQSIPPLPPHKFLAAAAAA
AAAAAAPPAFSSSPSEISCTQLQSDPCHSLLLSLPPSLRPSAQCFSSTTP
PSAQGRDLSTHAGIWSLVFFTFLLLLFTGKVWTEVMGIIEGTAAAEEEEE
ERLNSPLLRGQYE*
back to top
Synonyms
Publications