NO27G00630.1, NO27G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00630.1
Unique NameNO27G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1561
Alignment locationchr27:230015..231575 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:230015..231575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00630.1 vs.
Match: EWM21031.1 (hypothetical protein Naga_100478g2 [Nannochloropsis gaditana])

HSP 1 Score: 85.9 bits (211), Expect = 2.800e-13
Identity = 115/363 (31.68%), Postives = 164/363 (45.18%), Query Frame = 0 
Query:   20 YKSISS----------STPP-PFSSPTLIRTDMTIDPPIENTITQPSYSLWAQGNTNTNGHSFFFIRVAQVFLLIAATALMTAWLLLFKGLRAPPPPPLLPPPPPPPPPQRSPFPLLFQQQQQQQQQQQQHHHHHQHHRNTNTNKKAFASLKLGEYLIFFSALCVFLSLFSYACGVSHHALTRLCTH--DASTLPALPQFPPSNVTVAGSVTAAAAVPEVDVLPSPQSIPPLP-PHKFLAAAAAAAAAAAAP---PAFSSSPSEISCTQLQSDPCHSLLLSLPPSLRPSAQCFSSTTPPSAQGRDLSTHAGIWSLVFFTFLLLLFTGKVWTEVMGII------EGTA-AAEEEEEERLNSPLL 359
            Y+SIS+          STP  P +SP L+RTD     P+E  + Q SY+LWAQGN   +G + +    AQ FL++A   L+ AW+ +              P  P      SP P                           T      +LKLG   +  +ALC+ L++ ++A GVS  AL+ +C    ++  LP L          + S  ++  VP      SP S P +  P + L A++  A A+  P   P    S + ++C QL +DPC S   SL P   P + C   T PPS     +S H G+WSL+ F  LLL+ TG+VW E+ G++      EGT     E E E L +PLL
Sbjct:   96 YRSISTQQVATNLYMESTPANPTTSPVLVRTDFVDQTPVEQVVIQKSYALWAQGN-RADGRAVY---AAQSFLVLALLFLLFAWVSILA-------SLSFLPVSPSQNSSSSPSPA--------------------------TPGTLSRTLKLGRGAVVAAALCILLTVMTWAWGVSPQALSHMCVQAGESHLLPVLR---------SQSRHSSPGVPS-----SPLSPPRVTAPFQGLPASSFTALASQPPTPWPLTKPSTTPVTCWQLANDPC-SAFDSLHP---PPSSCI--TRPPS-----VSLHGGLWSLMLFVALLLVLTGRVWKELEGMVGRIVEWEGTGRGGREGEGESLQAPLL 396
The following BLAST results are available for this feature:
BLAST of NO27G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21031.12.800e-1331.68hypothetical protein Naga_100478g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00630NO27G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00630.1NO27G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00630.1.cds1NO27G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00630.1 ID=NO27G00630.1|Name=NO27G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp
ATGAGCATTTATGCGCCCTCCGACGGCAGCAGCAGCAGCGATCATGTCAG
AGACAACTATAAAAGCATCAGCAGCAGCACCCCTCCTCCTTTCTCATCGC
CGACACTAATTCGCACAGATATGACAATCGACCCTCCCATAGAAAACACA
ATTACCCAACCATCCTACTCCCTCTGGGCACAAGGCAACACCAACACCAA
CGGCCACAGTTTCTTCTTCATAAGGGTAGCACAAGTTTTTCTTCTCATCG
CCGCCACTGCTTTGATGACTGCTTGGCTTCTACTATTCAAAGGACTACGT
GCCCCTCCTCCTCCCCCTCTTCTTCCTCCTCCTCCCCCCCCTCCTCCTCC
TCAGCGATCGCCTTTCCCCCTCTTATTTCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCATCATCATCATCAACATCATCGAAATACGAAC
ACGAACAAGAAGGCTTTCGCTAGTTTAAAGCTAGGAGAATATCTTATCTT
CTTCTCTGCTCTATGTGTCTTCCTCTCCTTATTCTCCTATGCGTGCGGAG
TTTCCCATCATGCCCTTACCCGTCTCTGCACGCATGACGCTTCTACTCTC
CCTGCCCTTCCACAATTTCCTCCTTCGAATGTGACGGTTGCTGGTTCTGT
TACTGCTGCTGCTGCGGTGCCGGAGGTCGATGTGCTTCCTTCTCCTCAAT
CCATTCCTCCTTTACCTCCTCATAAGTTTCTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTCCTCCCGCTTTTTCCTCTTCTCCTTCAGAAAT
TTCTTGCACCCAGCTCCAATCCGACCCCTGCCACTCCCTCCTCCTCTCCC
TCCCTCCATCCCTCCGGCCTTCAGCACAGTGCTTTAGCAGCACCACCCCT
CCTTCGGCCCAAGGTAGGGACCTAAGCACACACGCAGGAATTTGGTCGTT
GGTCTTCTTTACGTTCTTGTTGCTGTTGTTCACGGGGAAGGTATGGACAG
AGGTAATGGGGATTATAGAAGGAACAGCAGCAGCAGAAGAAGAAGAGGAA
GAAAGGTTGAACTCGCCGCTGTTGAGAGGACAGTATGAATAGGTGGAGAC
GAGGAAGAGGAAGAGGAGGAAAAAGTGAGCCAAAATGATTTTAGATAAGT
AAAAAAAACGGGGAAGGAGGGGAAAAGAGAAAATATAAATATCGCTCACA
AAAGATGTGAATGATATTCATTCATATGTATACTATGTATACATAGGTAT
GTATTAAAGGAGAGAATAAATCAAGAACAGGAAGCAAAAACGCCACACTT
GAAGTGAAAATATCACAATCGTTCTCGAGGCCGCGCGGCCTGACCGTTAG
CCGTTAGTGGAACCATTGATAGGTTGCAGCTTCAAATGTACGATACGTAT
AATGGGCTCTGGTAAATAAAATACAAGGCGATGGAAGAAATCATACAACA
TATTTATGACAATATACTGCAAATGACAATAAATAAAGTTAAATGAAAGG
GGAAGTACGTCACCAATTCATCTCATCCGATCAATCACCAAAGGCGTGTA
TGGCGTGTATG
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protein sequence of NO27G00630.1

>NO27G00630.1-protein ID=NO27G00630.1-protein|Name=NO27G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MSIYAPSDGSSSSDHVRDNYKSISSSTPPPFSSPTLIRTDMTIDPPIENT
ITQPSYSLWAQGNTNTNGHSFFFIRVAQVFLLIAATALMTAWLLLFKGLR
APPPPPLLPPPPPPPPPQRSPFPLLFQQQQQQQQQQQQHHHHHQHHRNTN
TNKKAFASLKLGEYLIFFSALCVFLSLFSYACGVSHHALTRLCTHDASTL
PALPQFPPSNVTVAGSVTAAAAVPEVDVLPSPQSIPPLPPHKFLAAAAAA
AAAAAAPPAFSSSPSEISCTQLQSDPCHSLLLSLPPSLRPSAQCFSSTTP
PSAQGRDLSTHAGIWSLVFFTFLLLLFTGKVWTEVMGIIEGTAAAEEEEE
ERLNSPLLRGQYE*
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mRNA from alignment at chr27:230015..231575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00630.1 ID=NO27G00630.1|Name=NO27G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp|location=Sequence derived from alignment at chr27:230015..231575- (Nannochloropsis oceanica)
ATGAGCATTTATGCGCCCTCCGACGGCAGCAGCAGCAGCGATCATGTCAG
AGACAACTATAAAAGCATCAGCAGCAGCACCCCTCCTCCTTTCTCATCGC
CGACACTAATTCGCACAGATATGACAATCGACCCTCCCATAGAAAACACA
ATTACCCAACCATCCTACTCCCTCTGGGCACAAGGCAACACCAACACCAA
CGGCCACAGTTTCTTCTTCATAAGGGTAGCACAAGTTTTTCTTCTCATCG
CCGCCACTGCTTTGATGACTGCTTGGCTTCTACTATTCAAAGGACTACGT
GCCCCTCCTCCTCCCCCTCTTCTTCCTCCTCCTCCCCCCCCTCCTCCTCC
TCAGCGATCGCCTTTCCCCCTCTTATTTCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCATCATCATCATCAACATCATCGAAATACGAAC
ACGAACAAGAAGGCTTTCGCTAGTTTAAAGCTAGGAGAATATCTTATCTT
CTTCTCTGCTCTATGTGTCTTCCTCTCCTTATTCTCCTATGCGTGCGGAG
TTTCCCATCATGCCCTTACCCGTCTCTGCACGCATGACGCTTCTACTCTC
CCTGCCCTTCCACAATTTCCTCCTTCGAATGTGACGGTTGCTGGTTCTGT
TACTGCTGCTGCTGCGGTGCCGGAGGTCGATGTGCTTCCTTCTCCTCAAT
CCATTCCTCCTTTACCTCCTCATAAGTTTCTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTCCTCCCGCTTTTTCCTCTTCTCCTTCAGAAAT
TTCTTGCACCCAGCTCCAATCCGACCCCTGCCACTCCCTCCTCCTCTCCC
TCCCTCCATCCCTCCGGCCTTCAGCACAGTGCTTTAGCAGCACCACCCCT
CCTTCGGCCCAAGGTAGGGACCTAAGCACACACGCAGGAATTTGGTCGTT
GGTCTTCTTTACGTTCTTGTTGCTGTTGTTCACGGGGAAGGTATGGACAG
AGGTAATGGGGATTATAGAAGGAACAGCAGCAGCAGAAGAAGAAGAGGAA
GAAAGGTTGAACTCGCCGCTGTTGAGAGGACAGTATGAATAGGTGGAGAC
GAGGAAGAGGAAGAGGAGGAAAAAGTGAGCCAAAATGATTTTAGATAAGT
AAAAAAAACGGGGAAGGAGGGGAAAAGAGAAAATATAAATATCGCTCACA
AAAGATGTGAATGATATTCATTCATATGTATACTATGTATACATAGGTAT
GTATTAAAGGAGAGAATAAATCAAGAACAGGAAGCAAAAACGCCACACTT
GAAGTGAAAATATCACAATCGTTCTCGAGGCCGCGCGGCCTGACCGTTAG
CCGTTAGTGGAACCATTGATAGGTTGCAGCTTCAAATGTACGATACGTAT
AATGGGCTCTGGTAAATAAAATACAAGGCGATGGAAGAAATCATACAACA
TATTTATGACAATATACTGCAAATGACAATAAATAAAGTTAAATGAAAGG
GGAAGTACGTCACCAATTCATCTCATCCGATCAATCACCAAAGGCGTGTA
TGGCGTGTATG
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Coding sequence (CDS) from alignment at chr27:230015..231575-

>NO27G00630.1 ID=NO27G00630.1|Name=NO27G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr27:230015..231575- (Nannochloropsis oceanica)
ATGAGCATTTATGCGCCCTCCGACGGCAGCAGCAGCAGCGATCATGTCAG
AGACAACTATAAAAGCATCAGCAGCAGCACCCCTCCTCCTTTCTCATCGC
CGACACTAATTCGCACAGATATGACAATCGACCCTCCCATAGAAAACACA
ATTACCCAACCATCCTACTCCCTCTGGGCACAAGGCAACACCAACACCAA
CGGCCACAGTTTCTTCTTCATAAGGGTAGCACAAGTTTTTCTTCTCATCG
CCGCCACTGCTTTGATGACTGCTTGGCTTCTACTATTCAAAGGACTACGT
GCCCCTCCTCCTCCCCCTCTTCTTCCTCCTCCTCCCCCCCCTCCTCCTCC
TCAGCGATCGCCTTTCCCCCTCTTATTTCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCATCATCATCATCAACATCATCGAAATACGAAC
ACGAACAAGAAGGCTTTCGCTAGTTTAAAGCTAGGAGAATATCTTATCTT
CTTCTCTGCTCTATGTGTCTTCCTCTCCTTATTCTCCTATGCGTGCGGAG
TTTCCCATCATGCCCTTACCCGTCTCTGCACGCATGACGCTTCTACTCTC
CCTGCCCTTCCACAATTTCCTCCTTCGAATGTGACGGTTGCTGGTTCTGT
TACTGCTGCTGCTGCGGTGCCGGAGGTCGATGTGCTTCCTTCTCCTCAAT
CCATTCCTCCTTTACCTCCTCATAAGTTTCTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTCCTCCCGCTTTTTCCTCTTCTCCTTCAGAAAT
TTCTTGCACCCAGCTCCAATCCGACCCCTGCCACTCCCTCCTCCTCTCCC
TCCCTCCATCCCTCCGGCCTTCAGCACAGTGCTTTAGCAGCACCACCCCT
CCTTCGGCCCAAGGTAGGGACCTAAGCACACACGCAGGAATTTGGTCGTT
GGTCTTCTTTACGTTCTTGTTGCTGTTGTTCACGGGGAAGGTATGGACAG
AGGTAATGGGGATTATAGAAGGAACAGCAGCAGCAGAAGAAGAAGAGGAA
GAAAGGTTGAACTCGCCGCTGTTGAGAGGACAGTATGAATAG
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Synonyms
Publications