NO27G00600, NO27G00600 (gene) Nannochloropsis oceanica

Overview
NameNO27G00600
Unique NameNO27G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2468
Alignment locationchr27:219916..222383 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:219916..222383 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005063NSK005063Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00600.1NO27G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603466gene_8650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00600.1NO27G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00600 ID=NO27G00600|Name=NO27G00600|organism=Nannochloropsis oceanica|type=gene|length=2468bp
CGCCCGTTTAAGTCTCCTCCTTCTTTCCCGTCCCTCCCTCGCATTTGTTC
CACCTGTCTCAACCCTTCATTCAAAGCAAAGACTCGTGTCAACAAGCTAT
ATGTCAAATTTCTCACTTCATGCTTACCTACACACATCCCTCCGAGACTC
ATTCCCTCCCATTCCTCATATCTTGCCCACCTACAAATCACAGATAACAT
GGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCTCCTCGCCATCG
CCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTGCCCGTGGCCTA
CGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAAGTCCGAGCCTC
CAAACCCACGACGACCGCGACGTCGACGGCGACCATCCCTCCCCAGCAAG
CGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATCCCGCTGAGGCT
GCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTATCTGAATATGA
GGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTTGATGTCGGACT
CCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCGCCATCATGCCC
ACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAAATCCCAAACAA
TGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTCCCTGATGTCGT
CCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAACCCGCCGACGGG
CACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCAAGAATCCCTGG
AATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGATCCCTCGAGGCA
TCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCATCAACCAGGGC
GTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAAATGAACCAGgt
atggaggaggagaaacgaagttaggttggagaataagaagggccttggct
atgcgtgattgagagggaggaagggaggaagggagggagggctgaaaggg
tactttaaagctagcccttgtcgttcatccaactcgaagagaagacttaa
atcaccgtacctccttctcttccctctttcactccttccttcccgtcttt
cttcccttcttccttctctcgatccctatgtagATGCGACAAGACTACGA
ACGTCGCTGTAACCTTTACCCTGGCGAGGCAGAATACCTTTATGAAAAAG
CCCTTGAGCAAGAGCAGCAACAGCAGAAGCAACAACAGCAACAGCAACTA
GAGGAGGGAGGGAGAAAATTGCAGCAACTGATCAATATGGGTGCCAATGC
TTTGGTGAGAGGTATGGCTGCCTATGGGAGAGATGCGGCGTGCCCGGATG
AGGAGCAGCGCCAGCAGTACTTGCAATTGAAGAAAGAAGCGACCGATGCC
TATGAGACTATGGTGGCTCCGCATAAAGAAATCCAGCTCCAGCAGCACCA
GCACCAGCGAATACTACTTCAGCAATGGGACGGTGAGGTTGAGTTGAGGG
TGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGCACATGCACAGGCAGGCG
CGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAGGAGGGTAAACAGGCAAT
GCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGCACGGCAGGAGGAGTTCA
AAGATTCAAACAGTGCGATCGACAAGACCAACAAGAACGCGGAGTGGCTG
AAGGAGGTGGAGGGGAAAACAGGTGAGGAAATGGAAGGGAAAGAAGGAAA
GGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGAGGGGAAGAAGGGAAAGG
TGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGGACGATCTCGATGACCTC
GATATATTTGATAAACCGAAGGATGAAAGAGATGATGGAGATGTCGGACC
CTTTTAGAGGAAGGGGGGGGGGCAACAAGGAGGAATGGTTAGAAGGAAGA
AAGAGGGAAGAGAAAGGAAGACAGAGAATGGGAGACTAAAAGACGGAAGA
TAGTAGGAAAATGGGGCGCAATGAGATACCTTCACTTTTATATTTAAAAT
GTTTATCTTGTTGTACGAAAGCGTGGGTTGTGGTCCTATTCTTGAGAATG
CATGGAAATAAATGAGTGGAAACGGGATTAAGTACCAATGAAAAAGAAAC
TGACAGTTGTATTCATCTGTTGGTGTTGTGCGTGTTGTGCATATATAAGT
GCATGTTTCCTTCCTTGAGATTTATAAGAAGAAACATTTTATTTTCGTGC
GCGAGGAGGAGGAGACGACGAAGAGAAGTAGAAGCGAGCAAAAGAAGAAA
ATGAAGGAAGGAGGGGAGAGTGGAAGGGACCAAAATAAGAGGTGGTAGAA
GAAGCCTAGAATGACAACCTACCCACTCGCCCGCCGACAGTGCAAAGAAG
AAAAGAGACCAACTGGAT
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protein sequence of NO27G00600.1

>NO27G00600.1-protein ID=NO27G00600.1-protein|Name=NO27G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MGRALQGRRLTGPLLAIALILLATHAPKATARGLRKDTEGKEENKQQVRA
SKPTTTATSTATIPPQQATAASVGATFSYDPAEAAAALEEEIDQAQLSEY
EALKTLHEDMLIGLMSDSSSIPPSSSSSSSAIMPTAAAEELELNRYQIPN
NDAVQTLHEDMLISLMSSSSSRPQQAFVPQPADGHRRLQFRGIPGIPRIP
GIPGIPRVPGMPGIPRGIPGMGYVRTGARVINQGVNVVRQGANTAQEMNQ
MRQDYERRCNLYPGEAEYLYEKALEQEQQQQKQQQQQQLEEGGRKLQQLI
NMGANALVRGMAAYGRDAACPDEEQRQQYLQLKKEATDAYETMVAPHKEI
QLQQHQHQRILLQQWDGEVELRVVGGGRGAGLAHMHRQARAAYSREVLLE
EGKQAMPGPVEGAEVVARQEEFKDSNSAIDKTNKNAEWLKEVEGKTGEEM
EGKEGKEVEGKKGKEVEGKKGKVGKKGKARVTWDDLDDLDIFDKPKDERD
DGDVGPF*
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Synonyms
Publications