NO27G00600.1, NO27G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00600.1
Unique NameNO27G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2233
Alignment locationchr27:219916..222383 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:219916..222383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00600NO27G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00600.1NO27G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00600.1.cds1NO27G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00600.1.cds2NO27G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00600.1 ID=NO27G00600.1|Name=NO27G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp
CGCCCGTTTAAGTCTCCTCCTTCTTTCCCGTCCCTCCCTCGCATTTGTTC
CACCTGTCTCAACCCTTCATTCAAAGCAAAGACTCGTGTCAACAAGCTAT
ATGTCAAATTTCTCACTTCATGCTTACCTACACACATCCCTCCGAGACTC
ATTCCCTCCCATTCCTCATATCTTGCCCACCTACAAATCACAGATAACAT
GGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCTCCTCGCCATCG
CCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTGCCCGTGGCCTA
CGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAAGTCCGAGCCTC
CAAACCCACGACGACCGCGACGTCGACGGCGACCATCCCTCCCCAGCAAG
CGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATCCCGCTGAGGCT
GCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTATCTGAATATGA
GGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTTGATGTCGGACT
CCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCGCCATCATGCCC
ACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAAATCCCAAACAA
TGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTCCCTGATGTCGT
CCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAACCCGCCGACGGG
CACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCAAGAATCCCTGG
AATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGATCCCTCGAGGCA
TCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCATCAACCAGGGC
GTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAAATGAACCAGAT
GCGACAAGACTACGAACGTCGCTGTAACCTTTACCCTGGCGAGGCAGAAT
ACCTTTATGAAAAAGCCCTTGAGCAAGAGCAGCAACAGCAGAAGCAACAA
CAGCAACAGCAACTAGAGGAGGGAGGGAGAAAATTGCAGCAACTGATCAA
TATGGGTGCCAATGCTTTGGTGAGAGGTATGGCTGCCTATGGGAGAGATG
CGGCGTGCCCGGATGAGGAGCAGCGCCAGCAGTACTTGCAATTGAAGAAA
GAAGCGACCGATGCCTATGAGACTATGGTGGCTCCGCATAAAGAAATCCA
GCTCCAGCAGCACCAGCACCAGCGAATACTACTTCAGCAATGGGACGGTG
AGGTTGAGTTGAGGGTGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGCAC
ATGCACAGGCAGGCGCGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAGGA
GGGTAAACAGGCAATGCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGCAC
GGCAGGAGGAGTTCAAAGATTCAAACAGTGCGATCGACAAGACCAACAAG
AACGCGGAGTGGCTGAAGGAGGTGGAGGGGAAAACAGGTGAGGAAATGGA
AGGGAAAGAAGGAAAGGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGAGG
GGAAGAAGGGAAAGGTGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGGAC
GATCTCGATGACCTCGATATATTTGATAAACCGAAGGATGAAAGAGATGA
TGGAGATGTCGGACCCTTTTAGAGGAAGGGGGGGGGGCAACAAGGAGGAA
TGGTTAGAAGGAAGAAAGAGGGAAGAGAAAGGAAGACAGAGAATGGGAGA
CTAAAAGACGGAAGATAGTAGGAAAATGGGGCGCAATGAGATACCTTCAC
TTTTATATTTAAAATGTTTATCTTGTTGTACGAAAGCGTGGGTTGTGGTC
CTATTCTTGAGAATGCATGGAAATAAATGAGTGGAAACGGGATTAAGTAC
CAATGAAAAAGAAACTGACAGTTGTATTCATCTGTTGGTGTTGTGCGTGT
TGTGCATATATAAGTGCATGTTTCCTTCCTTGAGATTTATAAGAAGAAAC
ATTTTATTTTCGTGCGCGAGGAGGAGGAGACGACGAAGAGAAGTAGAAGC
GAGCAAAAGAAGAAAATGAAGGAAGGAGGGGAGAGTGGAAGGGACCAAAA
TAAGAGGTGGTAGAAGAAGCCTAGAATGACAACCTACCCACTCGCCCGCC
GACAGTGCAAAGAAGAAAAGAGACCAACTGGAT
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protein sequence of NO27G00600.1

>NO27G00600.1-protein ID=NO27G00600.1-protein|Name=NO27G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MGRALQGRRLTGPLLAIALILLATHAPKATARGLRKDTEGKEENKQQVRA
SKPTTTATSTATIPPQQATAASVGATFSYDPAEAAAALEEEIDQAQLSEY
EALKTLHEDMLIGLMSDSSSIPPSSSSSSSAIMPTAAAEELELNRYQIPN
NDAVQTLHEDMLISLMSSSSSRPQQAFVPQPADGHRRLQFRGIPGIPRIP
GIPGIPRVPGMPGIPRGIPGMGYVRTGARVINQGVNVVRQGANTAQEMNQ
MRQDYERRCNLYPGEAEYLYEKALEQEQQQQKQQQQQQLEEGGRKLQQLI
NMGANALVRGMAAYGRDAACPDEEQRQQYLQLKKEATDAYETMVAPHKEI
QLQQHQHQRILLQQWDGEVELRVVGGGRGAGLAHMHRQARAAYSREVLLE
EGKQAMPGPVEGAEVVARQEEFKDSNSAIDKTNKNAEWLKEVEGKTGEEM
EGKEGKEVEGKKGKEVEGKKGKVGKKGKARVTWDDLDDLDIFDKPKDERD
DGDVGPF*
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mRNA from alignment at chr27:219916..222383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00600.1 ID=NO27G00600.1|Name=NO27G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr27:219916..222383- (Nannochloropsis oceanica)
CGCCCGTTTAAGTCTCCTCCTTCTTTCCCGTCCCTCCCTCGCATTTGTTC
CACCTGTCTCAACCCTTCATTCAAAGCAAAGACTCGTGTCAACAAGCTAT
ATGTCAAATTTCTCACTTCATGCTTACCTACACACATCCCTCCGAGACTC
ATTCCCTCCCATTCCTCATATCTTGCCCACCTACAAATCACAGATAACAT
GGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCTCCTCGCCATCG
CCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTGCCCGTGGCCTA
CGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAAGTCCGAGCCTC
CAAACCCACGACGACCGCGACGTCGACGGCGACCATCCCTCCCCAGCAAG
CGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATCCCGCTGAGGCT
GCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTATCTGAATATGA
GGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTTGATGTCGGACT
CCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCGCCATCATGCCC
ACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAAATCCCAAACAA
TGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTCCCTGATGTCGT
CCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAACCCGCCGACGGG
CACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCAAGAATCCCTGG
AATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGATCCCTCGAGGCA
TCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCATCAACCAGGGC
GTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAAATGAACCAGGT
ATGGAGGAGGAGAAACGAAGTTAGGTTGGAGAATAAGAAGGGCCTTGGCT
ATGCGTGATTGAGAGGGAGGAAGGGAGGAAGGGAGGGAGGGCTGAAAGGG
TACTTTAAAGCTAGCCCTTGTCGTTCATCCAACTCGAAGAGAAGACTTAA
ATCACCGTACCTCCTTCTCTTCCCTCTTTCACTCCTTCCTTCCCGTCTTT
CTTCCCTTCTTCCTTCTCTCGATCCCTATGTAGATGCGACAAGACTACGA
ACGTCGCTGTAACCTTTACCCTGGCGAGGCAGAATACCTTTATGAAAAAG
CCCTTGAGCAAGAGCAGCAACAGCAGAAGCAACAACAGCAACAGCAACTA
GAGGAGGGAGGGAGAAAATTGCAGCAACTGATCAATATGGGTGCCAATGC
TTTGGTGAGAGGTATGGCTGCCTATGGGAGAGATGCGGCGTGCCCGGATG
AGGAGCAGCGCCAGCAGTACTTGCAATTGAAGAAAGAAGCGACCGATGCC
TATGAGACTATGGTGGCTCCGCATAAAGAAATCCAGCTCCAGCAGCACCA
GCACCAGCGAATACTACTTCAGCAATGGGACGGTGAGGTTGAGTTGAGGG
TGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGCACATGCACAGGCAGGCG
CGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAGGAGGGTAAACAGGCAAT
GCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGCACGGCAGGAGGAGTTCA
AAGATTCAAACAGTGCGATCGACAAGACCAACAAGAACGCGGAGTGGCTG
AAGGAGGTGGAGGGGAAAACAGGTGAGGAAATGGAAGGGAAAGAAGGAAA
GGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGAGGGGAAGAAGGGAAAGG
TGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGGACGATCTCGATGACCTC
GATATATTTGATAAACCGAAGGATGAAAGAGATGATGGAGATGTCGGACC
CTTTTAGAGGAAGGGGGGGGGGCAACAAGGAGGAATGGTTAGAAGGAAGA
AAGAGGGAAGAGAAAGGAAGACAGAGAATGGGAGACTAAAAGACGGAAGA
TAGTAGGAAAATGGGGCGCAATGAGATACCTTCACTTTTATATTTAAAAT
GTTTATCTTGTTGTACGAAAGCGTGGGTTGTGGTCCTATTCTTGAGAATG
CATGGAAATAAATGAGTGGAAACGGGATTAAGTACCAATGAAAAAGAAAC
TGACAGTTGTATTCATCTGTTGGTGTTGTGCGTGTTGTGCATATATAAGT
GCATGTTTCCTTCCTTGAGATTTATAAGAAGAAACATTTTATTTTCGTGC
GCGAGGAGGAGGAGACGACGAAGAGAAGTAGAAGCGAGCAAAAGAAGAAA
ATGAAGGAAGGAGGGGAGAGTGGAAGGGACCAAAATAAGAGGTGGTAGAA
GAAGCCTAGAATGACAACCTACCCACTCGCCCGCCGACAGTGCAAAGAAG
AAAAGAGACCAACTGGAT
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Coding sequence (CDS) from alignment at chr27:219916..222383-

>NO27G00600.1 ID=NO27G00600.1|Name=NO27G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr27:219916..222383- (Nannochloropsis oceanica)
ATGGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCTCCTCGCCAT
CGCCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTGCCCGTGGCC
TACGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAAGTCCGAGCC
TCCAAACCCACGACGACCGCGACGTCGACGGCGACCATCCCTCCCCAGCA
AGCGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATCCCGCTGAGG
CTGCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTATCTGAATAT
GAGGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTTGATGTCGGA
CTCCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCGCCATCATGC
CCACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAAATCCCAAAC
AATGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTCCCTGATGTC
GTCCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAACCCGCCGACG
GGCACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCAAGAATCCCT
GGAATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGATCCCTCGAGG
CATCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCATCAACCAGG
GCGTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAAATGAACCAG
ATGCGACAAGACTACGAACGTCGCTGTAACCTTTACCCTGGCGAGGCAGA
ATACCTTTATGAAAAAGCCCTTGAGCAAGAGCAGCAACAGCAGAAGCAAC
AACAGCAACAGCAACTAGAGGAGGGAGGGAGAAAATTGCAGCAACTGATC
AATATGGGTGCCAATGCTTTGGTGAGAGGTATGGCTGCCTATGGGAGAGA
TGCGGCGTGCCCGGATGAGGAGCAGCGCCAGCAGTACTTGCAATTGAAGA
AAGAAGCGACCGATGCCTATGAGACTATGGTGGCTCCGCATAAAGAAATC
CAGCTCCAGCAGCACCAGCACCAGCGAATACTACTTCAGCAATGGGACGG
TGAGGTTGAGTTGAGGGTGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGC
ACATGCACAGGCAGGCGCGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAG
GAGGGTAAACAGGCAATGCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGC
ACGGCAGGAGGAGTTCAAAGATTCAAACAGTGCGATCGACAAGACCAACA
AGAACGCGGAGTGGCTGAAGGAGGTGGAGGGGAAAACAGGTGAGGAAATG
GAAGGGAAAGAAGGAAAGGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGA
GGGGAAGAAGGGAAAGGTGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGG
ACGATCTCGATGACCTCGATATATTTGATAAACCGAAGGATGAAAGAGAT
GATGGAGATGTCGGACCCTTTTAG
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Synonyms
Publications