NO27G00520, NO27G00520 (gene) Nannochloropsis oceanica

Overview
NameNO27G00520
Unique NameNO27G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2673
Alignment locationchr27:191632..194304 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:191632..194304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005054NSK005054Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00520.1NO27G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|212271gene_8638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00520.1NO27G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00520 ID=NO27G00520|Name=NO27G00520|organism=Nannochloropsis oceanica|type=gene|length=2673bp
CATGAAGGCACCGTCCGCCGCTACTGAGGTTGAGAATCGCCACTGTTGCT
CGCGGGAGCTTTCACCAAACCTACAGTCATTTCTTTTTTCACTTGTCGAT
GCCCTGCCGTTAGGTCCTGTACGAGATCGACATCGACGTGCTCTCGATGG
CCGGCACCCCGGGAGGAAGAAATTGCAAACGCAAATTGACGGAGATAGTC
ATGGCCCGCCTACCTAGTTTCTCTTGATGCATCAATCTAACCCTTTTTCC
ACAACAGGAAGGTGCCATGCCCATCACGACAACATCGAGGGGCACAGACA
ACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAATGCTGGTG
TCTTTGACTTTCGgtaagtaccagaccccaggagaaaacttccgcctgac
acagaagcaaggaggtctcactttgccgcctcctccccacacccagAACA
ATGCATTGCGTTTGTCCCTCCGACACCACCACCACCAGCAAGCAGCAGTA
GCAGCAGCAACAAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAGCACA
GCAAGCGGGATTTCGTCAGCTTCTTATCAAGgtatgtgtttcgtacagaa
tgtttcacttcatcatcatctctgtctggcctgaagctactacggcagga
gagggcaagaaaattacaagtacagggaacattgattgaaacagtgacaa
agaaagagagagcgcgcacacacgcgagggtgcgttgtgaagaagcccct
tctgatcctcgaggacggcctgtctccatgtacatatcatacatgtatct
ctgtccatgagtgagtcacaacactttcgtgttgatcgtttccccttccc
tccccctctccctagGCGATAATGCAAGGTCAGCGAACCCACTCGAAGCT
CTACGTATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCGGCCA
GTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGACGGT
TGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTCTACA
GGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATGACCA
CAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCCTCCTCCC
CCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTTTTCGTCA
TTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAGCAACAGC
AGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAGATTGCAA
TGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTCTTCTTCA
GCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAAGCCGCCG
CCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCATCATCATC
AACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCACCCCAGC
CGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCAAAAAGAT
TCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCCCTCTTCT
GCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCTGAGAATC
CCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGGAGGGAGG
GAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAGAGGGTCG
GTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGAGCTCCTC
CCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAGCAACCGA
CAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGACACCCTCC
TAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGTCCTCCCT
CCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCCTCACACT
CCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCGCGAGGAA
CGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGACTGGCCGAAGGTAGGG
CTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCGG
AGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAAGTGAAAA
ATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAGGAGGAGC
ATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGGGGGAGGT
AGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGTAAGGGAG
GGAAGAAAGGAGGAGAGGGAGGGAAGGAGGGAGAGGGGGAGGTTGAGCTC
GCCTCGGTTCTCCGTGTAGATCCGAAGAGTTGTGCAGTGTTGTTGGCAGG
GATGGAGGGAGGGAGGGAGGGAGAGAAGGAGGTCAGGCGGCTGGAGAGAT
TGGCGGCGTCTCTGGTAATGGTGGGTGTGGATCCGGCGAGGATTTTGGGG
CAGGGGATGGAGAGATGGAGGGAGGGAGGGAGGGAGAAGACGGATGGGGT
TGGAGCGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGG
CGGAGAAGGTGGTGAAACCTTGA
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protein sequence of NO27G00520.1

>NO27G00520.1-protein ID=NO27G00520.1-protein|Name=NO27G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MPITTTSRGTDNGWTWGFYTLLALVMLVSLTFEQCIAFVPPTPPPPASSS
SSSNKGGESSTAGRASTASGISSASYQGDNARSANPLEALRMALHTSYAI
PHHAGQSMSTAAAVAATRTGGRLGVFTRREGRREEKASTGCHHQQQQHQR
YNDDDHNRDGEMASSFVSSPSSPSSSSPSFSSSTSSFSSLLLATLSRPPP
SSSATAVGGRAAAGTSQASEIAMASMTIAPPTPSSSSSSAAAASAAVAVE
PKASRRRNRQKQRKQQHQDHHHQHQQHASSFHPSHWHPSRVTDISSVSVD
GAVKKIRIQSLPGCPSLLPSLFCPSISSRQPGQFIALRIPLPLAKEGGME
GEKEGGKFLTVLAPIASAPERVGPRGHVDVLLDGKEELLPPPSVRSSVAG
AAAATDRLAWSRLLSSFSPDTLLEASEELGPGFSPLVLPPGPALPLSLLP
SLPLTLPSLLQEQRELLILARGTAGMAAVAAVLDWPKVGLLSGKCSSNSS
SSSSSGAGGKKGFKITVLIEVKNAVNEALRQQQREWRRSMPHVQLIPVLA
DSKGEVGKGGGLEAALFRYGKGGKKGGEGGKEGEGEVELASVLRVDPKSC
AVLLAGMEGGREGEKEVRRLERLAASLVMVGVDPARILGQGMERWREGGR
EKTDGVGAGKKRRNRKKKAAASAEKVVKP*
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Synonyms
Publications