NO27G00520.1, NO27G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00520.1
Unique NameNO27G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2306
Alignment locationchr27:191632..194304 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:191632..194304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00520NO27G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00520.1NO27G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00520.1.cds1NO27G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00520.1.cds2NO27G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00520.1.cds3NO27G00520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00520.1 ID=NO27G00520.1|Name=NO27G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp
CATGAAGGCACCGTCCGCCGCTACTGAGGTTGAGAATCGCCACTGTTGCT
CGCGGGAGCTTTCACCAAACCTACAGTCATTTCTTTTTTCACTTGTCGAT
GCCCTGCCGTTAGGTCCTGTACGAGATCGACATCGACGTGCTCTCGATGG
CCGGCACCCCGGGAGGAAGAAATTGCAAACGCAAATTGACGGAGATAGTC
ATGGCCCGCCTACCTAGTTTCTCTTGATGCATCAATCTAACCCTTTTTCC
ACAACAGGAAGGTGCCATGCCCATCACGACAACATCGAGGGGCACAGACA
ACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAATGCTGGTG
TCTTTGACTTTCGAACAATGCATTGCGTTTGTCCCTCCGACACCACCACC
ACCAGCAAGCAGCAGTAGCAGCAGCAACAAGGGAGGAGAGAGCAGCACGG
CGGGCCGGGCCAGCACAGCAAGCGGGATTTCGTCAGCTTCTTATCAAGGC
GATAATGCAAGGTCAGCGAACCCACTCGAAGCTCTACGTATGGCTCTCCA
CACGTCCTACGCCATCCCCCACCATGCCGGCCAGTCGATGTCCACTGCAG
CTGCTGTGGCTGCGACACGGACAGGAGGACGGTTGGGGGTTTTCACTCGG
AGGGAGGGAAGGAGGGAGGAAAAGGCGTCTACAGGGTGCCATCATCAGCA
GCAGCAGCATCAGCGCTATAACGACGATGACCACAACAGGGATGGGGAAA
TGGCCTCCTCCTTCGTTTCCTCCCCCTCCTCCCCCTCCTCCTCCTCACCC
TCCTTCTCCTCCTCCACGTCTTCTTTTTCGTCATTGCTACTGGCGACCCT
CTCTCGTCCACCACCGTCATCATCAGCAACAGCAGTAGGAGGAAGGGCAG
CAGCAGGAACATCACAAGCATCAGAGATTGCAATGGCATCGATGACGATT
GCACCTCCAACACCTTCCTCTTCTTCTTCTTCAGCAGCAGCAGCATCAGC
AGCGGTCGCAGTTGAACCCAAAGCAAGCCGCCGCCGCAATCGACAGAAGC
AGCGCAAGCAACAGCACCAAGATCATCATCATCAACATCAACAACATGCC
TCCTCCTTCCATCCCTCCCACTGGCACCCCAGCCGCGTCACGGACATATC
ATCCGTTTCCGTCGACGGAGCCGTCAAAAAGATTCGCATCCAATCCCTCC
CTGGTTGCCCTTCCCTCCTTCCCTCCCTCTTCTGCCCCTCCATCTCCTCC
CGACAGCCGGGCCAGTTTATTGCCCTGAGAATCCCCCTTCCCCTTGCGAA
GGAGGGCGGGATGGAGGGCGAAAAGGAGGGAGGGAAGTTTCTTACAGTCC
TGGCCCCCATTGCCTCGGCGCCGGAGAGGGTCGGTCCTAGAGGCCACGTG
GATGTCCTGCTGGATGGGAAGGAGGAGCTCCTCCCCCCTCCTTCCGTTCG
TTCCTCCGTTGCAGGAGCTGCGGCAGCAACCGACAGGCTGGCCTGGTCGC
GACTACTCTCTTCCTTCTCCCCCGACACCCTCCTAGAGGCCAGTGAGGAG
CTAGGGCCCGGCTTTAGCCCCCTCGTCCTCCCTCCCGGCCCCGCACTGCC
TTTGTCCCTCCTGCCCTCCCTTCCCCTCACACTCCCTTCTCTTCTTCAGG
AGCAGCGGGAGTTGTTGATTTTGGCGCGAGGAACGGCTGGGATGGCGGCG
GTAGCGGCGGTTCTGGACTGGCCGAAGGTAGGGCTGCTGAGCGGCAAGTG
CAGCAGCAACAGCAGCAGCAGCAGCAGCAGCGGAGCTGGTGGCAAGAAAG
GTTTCAAAATTACAGTCTTAATTGAAGTGAAAAATGCTGTCAATGAAGCC
TTGCGGCAACAGCAGAGGGAATGGAGGAGGAGCATGCCGCACGTACAACT
CATTCCCGTGCTTGCAGATTCTAAGGGGGAGGTAGGGAAAGGAGGAGGGT
TGGAAGCGGCGTTGTTTCGGTATGGTAAGGGAGGGAAGAAAGGAGGAGAG
GGAGGGAAGGAGGGAGAGGGGGAGGTTGAGCTCGCCTCGGTTCTCCGTGT
AGATCCGAAGAGTTGTGCAGTGTTGTTGGCAGGGATGGAGGGAGGGAGGG
AGGGAGAGAAGGAGGTCAGGCGGCTGGAGAGATTGGCGGCGTCTCTGGTA
ATGGTGGGTGTGGATCCGGCGAGGATTTTGGGGCAGGGGATGGAGAGATG
GAGGGAGGGAGGGAGGGAGAAGACGGATGGGGTTGGAGCGGGGAAGAAGA
GGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGGCGGAGAAGGTGGTGAAA
CCTTGA
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protein sequence of NO27G00520.1

>NO27G00520.1-protein ID=NO27G00520.1-protein|Name=NO27G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MPITTTSRGTDNGWTWGFYTLLALVMLVSLTFEQCIAFVPPTPPPPASSS
SSSNKGGESSTAGRASTASGISSASYQGDNARSANPLEALRMALHTSYAI
PHHAGQSMSTAAAVAATRTGGRLGVFTRREGRREEKASTGCHHQQQQHQR
YNDDDHNRDGEMASSFVSSPSSPSSSSPSFSSSTSSFSSLLLATLSRPPP
SSSATAVGGRAAAGTSQASEIAMASMTIAPPTPSSSSSSAAAASAAVAVE
PKASRRRNRQKQRKQQHQDHHHQHQQHASSFHPSHWHPSRVTDISSVSVD
GAVKKIRIQSLPGCPSLLPSLFCPSISSRQPGQFIALRIPLPLAKEGGME
GEKEGGKFLTVLAPIASAPERVGPRGHVDVLLDGKEELLPPPSVRSSVAG
AAAATDRLAWSRLLSSFSPDTLLEASEELGPGFSPLVLPPGPALPLSLLP
SLPLTLPSLLQEQRELLILARGTAGMAAVAAVLDWPKVGLLSGKCSSNSS
SSSSSGAGGKKGFKITVLIEVKNAVNEALRQQQREWRRSMPHVQLIPVLA
DSKGEVGKGGGLEAALFRYGKGGKKGGEGGKEGEGEVELASVLRVDPKSC
AVLLAGMEGGREGEKEVRRLERLAASLVMVGVDPARILGQGMERWREGGR
EKTDGVGAGKKRRNRKKKAAASAEKVVKP*
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mRNA from alignment at chr27:191632..194304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00520.1 ID=NO27G00520.1|Name=NO27G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2673bp|location=Sequence derived from alignment at chr27:191632..194304- (Nannochloropsis oceanica)
CATGAAGGCACCGTCCGCCGCTACTGAGGTTGAGAATCGCCACTGTTGCT
CGCGGGAGCTTTCACCAAACCTACAGTCATTTCTTTTTTCACTTGTCGAT
GCCCTGCCGTTAGGTCCTGTACGAGATCGACATCGACGTGCTCTCGATGG
CCGGCACCCCGGGAGGAAGAAATTGCAAACGCAAATTGACGGAGATAGTC
ATGGCCCGCCTACCTAGTTTCTCTTGATGCATCAATCTAACCCTTTTTCC
ACAACAGGAAGGTGCCATGCCCATCACGACAACATCGAGGGGCACAGACA
ACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAATGCTGGTG
TCTTTGACTTTCGGTAAGTACCAGACCCCAGGAGAAAACTTCCGCCTGAC
ACAGAAGCAAGGAGGTCTCACTTTGCCGCCTCCTCCCCACACCCAGAACA
ATGCATTGCGTTTGTCCCTCCGACACCACCACCACCAGCAAGCAGCAGTA
GCAGCAGCAACAAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAGCACA
GCAAGCGGGATTTCGTCAGCTTCTTATCAAGGTATGTGTTTCGTACAGAA
TGTTTCACTTCATCATCATCTCTGTCTGGCCTGAAGCTACTACGGCAGGA
GAGGGCAAGAAAATTACAAGTACAGGGAACATTGATTGAAACAGTGACAA
AGAAAGAGAGAGCGCGCACACACGCGAGGGTGCGTTGTGAAGAAGCCCCT
TCTGATCCTCGAGGACGGCCTGTCTCCATGTACATATCATACATGTATCT
CTGTCCATGAGTGAGTCACAACACTTTCGTGTTGATCGTTTCCCCTTCCC
TCCCCCTCTCCCTAGGCGATAATGCAAGGTCAGCGAACCCACTCGAAGCT
CTACGTATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCGGCCA
GTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGACGGT
TGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTCTACA
GGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATGACCA
CAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCCTCCTCCC
CCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTTTTCGTCA
TTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAGCAACAGC
AGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAGATTGCAA
TGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTCTTCTTCA
GCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAAGCCGCCG
CCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCATCATCATC
AACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCACCCCAGC
CGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCAAAAAGAT
TCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCCCTCTTCT
GCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCTGAGAATC
CCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGGAGGGAGG
GAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAGAGGGTCG
GTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGAGCTCCTC
CCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAGCAACCGA
CAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGACACCCTCC
TAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGTCCTCCCT
CCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCCTCACACT
CCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCGCGAGGAA
CGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGACTGGCCGAAGGTAGGG
CTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCGG
AGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAAGTGAAAA
ATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAGGAGGAGC
ATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGGGGGAGGT
AGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGTAAGGGAG
GGAAGAAAGGAGGAGAGGGAGGGAAGGAGGGAGAGGGGGAGGTTGAGCTC
GCCTCGGTTCTCCGTGTAGATCCGAAGAGTTGTGCAGTGTTGTTGGCAGG
GATGGAGGGAGGGAGGGAGGGAGAGAAGGAGGTCAGGCGGCTGGAGAGAT
TGGCGGCGTCTCTGGTAATGGTGGGTGTGGATCCGGCGAGGATTTTGGGG
CAGGGGATGGAGAGATGGAGGGAGGGAGGGAGGGAGAAGACGGATGGGGT
TGGAGCGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGG
CGGAGAAGGTGGTGAAACCTTGA
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Coding sequence (CDS) from alignment at chr27:191632..194304-

>NO27G00520.1 ID=NO27G00520.1|Name=NO27G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr27:191632..194304- (Nannochloropsis oceanica)
ATGCCCATCACGACAACATCGAGGGGCACAGACAACGGGTGGACATGGGG
TTTCTACACCCTCTTGGCATTGGTAATGCTGGTGTCTTTGACTTTCGAAC
AATGCATTGCGTTTGTCCCTCCGACACCACCACCACCAGCAAGCAGCAGT
AGCAGCAGCAACAAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAGCAC
AGCAAGCGGGATTTCGTCAGCTTCTTATCAAGGCGATAATGCAAGGTCAG
CGAACCCACTCGAAGCTCTACGTATGGCTCTCCACACGTCCTACGCCATC
CCCCACCATGCCGGCCAGTCGATGTCCACTGCAGCTGCTGTGGCTGCGAC
ACGGACAGGAGGACGGTTGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGG
AGGAAAAGGCGTCTACAGGGTGCCATCATCAGCAGCAGCAGCATCAGCGC
TATAACGACGATGACCACAACAGGGATGGGGAAATGGCCTCCTCCTTCGT
TTCCTCCCCCTCCTCCCCCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCA
CGTCTTCTTTTTCGTCATTGCTACTGGCGACCCTCTCTCGTCCACCACCG
TCATCATCAGCAACAGCAGTAGGAGGAAGGGCAGCAGCAGGAACATCACA
AGCATCAGAGATTGCAATGGCATCGATGACGATTGCACCTCCAACACCTT
CCTCTTCTTCTTCTTCAGCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAA
CCCAAAGCAAGCCGCCGCCGCAATCGACAGAAGCAGCGCAAGCAACAGCA
CCAAGATCATCATCATCAACATCAACAACATGCCTCCTCCTTCCATCCCT
CCCACTGGCACCCCAGCCGCGTCACGGACATATCATCCGTTTCCGTCGAC
GGAGCCGTCAAAAAGATTCGCATCCAATCCCTCCCTGGTTGCCCTTCCCT
CCTTCCCTCCCTCTTCTGCCCCTCCATCTCCTCCCGACAGCCGGGCCAGT
TTATTGCCCTGAGAATCCCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAG
GGCGAAAAGGAGGGAGGGAAGTTTCTTACAGTCCTGGCCCCCATTGCCTC
GGCGCCGGAGAGGGTCGGTCCTAGAGGCCACGTGGATGTCCTGCTGGATG
GGAAGGAGGAGCTCCTCCCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGA
GCTGCGGCAGCAACCGACAGGCTGGCCTGGTCGCGACTACTCTCTTCCTT
CTCCCCCGACACCCTCCTAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTA
GCCCCCTCGTCCTCCCTCCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCC
TCCCTTCCCCTCACACTCCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTT
GATTTTGGCGCGAGGAACGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGG
ACTGGCCGAAGGTAGGGCTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGCGGAGCTGGTGGCAAGAAAGGTTTCAAAATTACAGT
CTTAATTGAAGTGAAAAATGCTGTCAATGAAGCCTTGCGGCAACAGCAGA
GGGAATGGAGGAGGAGCATGCCGCACGTACAACTCATTCCCGTGCTTGCA
GATTCTAAGGGGGAGGTAGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTT
TCGGTATGGTAAGGGAGGGAAGAAAGGAGGAGAGGGAGGGAAGGAGGGAG
AGGGGGAGGTTGAGCTCGCCTCGGTTCTCCGTGTAGATCCGAAGAGTTGT
GCAGTGTTGTTGGCAGGGATGGAGGGAGGGAGGGAGGGAGAGAAGGAGGT
CAGGCGGCTGGAGAGATTGGCGGCGTCTCTGGTAATGGTGGGTGTGGATC
CGGCGAGGATTTTGGGGCAGGGGATGGAGAGATGGAGGGAGGGAGGGAGG
GAGAAGACGGATGGGGTTGGAGCGGGGAAGAAGAGGAGGAACCGGAAGAA
GAAGGCGGCGGCTTCGGCGGAGAAGGTGGTGAAACCTTGA
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Synonyms
Publications