NO27G00370, NO27G00370 (gene) Nannochloropsis oceanica

Overview
NameNO27G00370
Unique NameNO27G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2930
Alignment locationchr27:135769..138698 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:135769..138698 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00370.1NO27G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311183gene_10143Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00370.1NO27G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00370 ID=NO27G00370|Name=NO27G00370|organism=Nannochloropsis oceanica|type=gene|length=2930bp
CAGCAGGCGAAGAAACGCTTTCTCTTTCATCGAGCTCGAGGAACGATGCG
ATTGCCGCCGTTCGTCGGACCTTCGACGGGCCTTCCTTGGATGTGTATCA
CTGCGAGATGTGCACAGACAAAGTGTTGCATTCATATAGAAAACTCGTGA
CTTTCCTGCTTCTTGATTTTGTCCCGGGCGACTGTTGCCTTCTTCTCACC
CTCCCTTCCACCCCCCCTCTGACAGGTTCCTTGCATCGGCAGCGAGCGTG
CTACTCTTTACCGCGAGCTGCGGTCAAAAATGCAAGGCCAACAGGAGGGT
TTAGTTACGATCGGGAGTGAGTCTGGGGTCTGTCAGCAATGCCGTCTGTC
TAGGgtacgtccacttgaggggtctagcgcgcattccacactacaccatg
tcacggcgttctgcacaggcgttttgtttcttagcacccttcccacactt
ccccatgcccaatcatccctacagGTTCGCTGTGACCGCATCATTCCTTG
TCCCAGgtatgactctcctcaaatgggactggttgtctttgatttgacat
ttggtggcaggacatacgtgccacgcccgcactttcaaaattctacgacc
aatacctgtatgtgctgtgtaaagacctggtcaaatagcgatcaattagg
gttcacttccctctcgtatatacagATGTCAGCGCATGGGTTTGGAGTGC
GTGCCGCAATCTCGCGGACGTGGCCGGCCTCGCGTGATCAAGTCAGgtac
ggggtggctgagacccgtctatgtgggcaaagtgttagattaaaaatagc
gaacccttgtgttgtacgcatttttaccctccaaacccacgctgactgaa
ttcatttgcataaaacctctttcaaatgctcacacatacacccgaacagA
GGGGGGCGGCGGCTCGGGTTCAGGTGACCAGGCGAGCGCCAGGCCTGCAA
GCGGCGCAGCAAATCCCGGCGGTCTCAGTGCGACCATGACACGGAGGCCC
ACTCGTAGGATGGTACCGGCACGTTGGACATCAGCGGGGGCCTCGTCAAA
GGCGTTTGGGGGACTGCAGCAGGAGCAGGGTGGTGAGACGGCGGGGCGGG
GTGAGGAGCAGCTGTTTCGCAATCGACACAATCAGCAGCAGCGCCAGGAG
AGGCCTCACGGGGCAACGAATAATTTTGCGGCAGCAAGAACGCAGGTATG
CCATGAGAAAGAGCAAGGGGCCGAGGCCGAGGTGCAGAAAGAAAAGGAGG
GAAGCTCTACTTGGCGAGCAGGAAGGGATGGAGGTGGAGACTACAAATAT
CGCGCCAGGATGGCGCAGGAGAGAGTTCAAGGTGGTGGCGGAGCCGCATG
GGGAACAAGCTCGTTTTCCTCCGCATCCTCGGCAGCCAATCCCTCCTCCC
CGTCATCGTCATCATCTTCTTCAAAAAGCAGTAGAATCCTCAGACTCCCT
CGCTATCGCAAATCCGACCGCGGAAACTTGCTCCTGGAAGTCAGTGAAGC
TAAGTTTTTCAATCCTGTCATGGCGCACGCAGCCACGGGAATGCTGATCG
CAGCCATCAATCGTGTGCGGGTGGCAGGGAAACTCTGCCAAAGGAAAGCC
CACGCGCTGTTGCGAACTCTCGGAGCACGCGCGATGCGTCGGCCTGACTA
CGCTGGGCGCGAGCTGCTGGAGATGTTATCTGCTATGCTCAAGATAGGGG
ACTGGGCCGAGCACCTTTTTGGTCCCAAGGCCTCGATGCCACCCCTGGTG
CCGCTGCGCCCCGGATCAGGTGTGAGGAGGGGTCATGGAGAGGGCGTGGG
GGAGCGTGCTGGTGGTGGGAGCAGAGCGGGGGACGCCGGTGACAGACAGT
CCATGCTCTCGCCGCTGCCACAAACCGAGCAGCGGGACCCGGCGCCGCAG
CAGGATTTCTTACCCCTGCCTTTACACGAGGTGGAACGCGCTCAGCTCGC
CGAAGTAGAAGCAGACCTCAAGTCGGACCTGTTGTGGACTGTGACGGATG
GTGTCCCCCATTCGTACGCCGTGACCACCGCGGGACTTTCGTTGATCCGT
GCCTCGGAAGAATTCACCGAGCTTTTCCCTGTGCGGGACAGAAGCAAGAT
GGTGGAAGGCAGTCGACAAGAGGCGGTGTTACCTTGTTTCCTGTGGGCGA
GCCGTCTAGTCCCGGCGGACCAGTTGGGTTTTTTTGATACGTTGGCTTCG
ACCCTCCTAACGACGGGGGGGCGAGAGAAGATGTCGATGGTAGGAAAGTG
TGTCGATGGGAGAGGCAAGATTTTCTTGGCATTGATTCGATACCAGTTGA
TGATGCGAAAGGAAGGGAGAGACGCAATGGAGGCTTTCTCATGCCAGCGG
TTGCCGCCTTCGCAGCATGTGGTACCATCGAGCGAAGAGGAGGAGGAGGA
GGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAT
GGGAAGAGCGAAGGGAGGAGGATGAGAGAAACGGATGAGGATGAGAGAAA
CGGATGAACAATCAAGATGGAGCGCAGGAAGGACACTCCGTTTACGGTTG
TTGGACCAGCAAGTGCTTCTCCTTTAGAGGAGCCGGCCAAAAATACGACA
TGCGAGAGAAACACAGACAAGATGAAGCGAAAATACAGCGGTTAAAAAAA
CAGATTTATAATAATGACAGTAACGGACAAAATTTGAAAGCGAGTAAGTT
TTTGAGGTGAAGGGCTGGGGGCTGCCTTCGCGAAAATTGAAGGCGCCTGA
CTGGCTGTTACGAGTGTTTTTGTTTTGTTCGAGAAATCAAAATCAATACA
TTTAATCAAATGACATAAAGATCCCGTCATCAAGCGAAGTACCACAGAGT
TCCTCAACGAAACGAAGAAAATAATAGCAGCAATATACTTTTTTGTAGGG
AGGAGGAACCAGGACTGGGGTTGATGAAAA
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protein sequence of NO27G00370.1

>NO27G00370.1-protein ID=NO27G00370.1-protein|Name=NO27G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MQGQQEGLVTIGSESGVCQQCRLSRVRCDRIIPCPRCQRMGLECVPQSRG
RGRPRVIKSEGGGGSGSGDQASARPASGAANPGGLSATMTRRPTRRMVPA
RWTSAGASSKAFGGLQQEQGGETAGRGEEQLFRNRHNQQQRQERPHGATN
NFAAARTQVCHEKEQGAEAEVQKEKEGSSTWRAGRDGGGDYKYRARMAQE
RVQGGGGAAWGTSSFSSASSAANPSSPSSSSSSSKSSRILRLPRYRKSDR
GNLLLEVSEAKFFNPVMAHAATGMLIAAINRVRVAGKLCQRKAHALLRTL
GARAMRRPDYAGRELLEMLSAMLKIGDWAEHLFGPKASMPPLVPLRPGSG
VRRGHGEGVGERAGGGSRAGDAGDRQSMLSPLPQTEQRDPAPQQDFLPLP
LHEVERAQLAEVEADLKSDLLWTVTDGVPHSYAVTTAGLSLIRASEEFTE
LFPVRDRSKMVEGSRQEAVLPCFLWASRLVPADQLGFFDTLASTLLTTGG
REKMSMVGKCVDGRGKIFLALIRYQLMMRKEGRDAMEAFSCQRLPPSQHV
VPSSEEEEEEEEEEEVEEEEEEEEEEWEERREEDERNG*
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Synonyms
Publications