NO27G00370.1, NO27G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00370.1
Unique NameNO27G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2488
Alignment locationchr27:135769..138698 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:135769..138698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00370NO27G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00370.1NO27G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00370.1.cds1NO27G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00370.1.cds2NO27G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00370.1.cds3NO27G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00370.1.cds4NO27G00370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00370.1 ID=NO27G00370.1|Name=NO27G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp
CAGCAGGCGAAGAAACGCTTTCTCTTTCATCGAGCTCGAGGAACGATGCG
ATTGCCGCCGTTCGTCGGACCTTCGACGGGCCTTCCTTGGATGTGTATCA
CTGCGAGATGTGCACAGACAAAGTGTTGCATTCATATAGAAAACTCGTGA
CTTTCCTGCTTCTTGATTTTGTCCCGGGCGACTGTTGCCTTCTTCTCACC
CTCCCTTCCACCCCCCCTCTGACAGGTTCCTTGCATCGGCAGCGAGCGTG
CTACTCTTTACCGCGAGCTGCGGTCAAAAATGCAAGGCCAACAGGAGGGT
TTAGTTACGATCGGGAGTGAGTCTGGGGTCTGTCAGCAATGCCGTCTGTC
TAGGGTTCGCTGTGACCGCATCATTCCTTGTCCCAGATGTCAGCGCATGG
GTTTGGAGTGCGTGCCGCAATCTCGCGGACGTGGCCGGCCTCGCGTGATC
AAGTCAGAGGGGGGCGGCGGCTCGGGTTCAGGTGACCAGGCGAGCGCCAG
GCCTGCAAGCGGCGCAGCAAATCCCGGCGGTCTCAGTGCGACCATGACAC
GGAGGCCCACTCGTAGGATGGTACCGGCACGTTGGACATCAGCGGGGGCC
TCGTCAAAGGCGTTTGGGGGACTGCAGCAGGAGCAGGGTGGTGAGACGGC
GGGGCGGGGTGAGGAGCAGCTGTTTCGCAATCGACACAATCAGCAGCAGC
GCCAGGAGAGGCCTCACGGGGCAACGAATAATTTTGCGGCAGCAAGAACG
CAGGTATGCCATGAGAAAGAGCAAGGGGCCGAGGCCGAGGTGCAGAAAGA
AAAGGAGGGAAGCTCTACTTGGCGAGCAGGAAGGGATGGAGGTGGAGACT
ACAAATATCGCGCCAGGATGGCGCAGGAGAGAGTTCAAGGTGGTGGCGGA
GCCGCATGGGGAACAAGCTCGTTTTCCTCCGCATCCTCGGCAGCCAATCC
CTCCTCCCCGTCATCGTCATCATCTTCTTCAAAAAGCAGTAGAATCCTCA
GACTCCCTCGCTATCGCAAATCCGACCGCGGAAACTTGCTCCTGGAAGTC
AGTGAAGCTAAGTTTTTCAATCCTGTCATGGCGCACGCAGCCACGGGAAT
GCTGATCGCAGCCATCAATCGTGTGCGGGTGGCAGGGAAACTCTGCCAAA
GGAAAGCCCACGCGCTGTTGCGAACTCTCGGAGCACGCGCGATGCGTCGG
CCTGACTACGCTGGGCGCGAGCTGCTGGAGATGTTATCTGCTATGCTCAA
GATAGGGGACTGGGCCGAGCACCTTTTTGGTCCCAAGGCCTCGATGCCAC
CCCTGGTGCCGCTGCGCCCCGGATCAGGTGTGAGGAGGGGTCATGGAGAG
GGCGTGGGGGAGCGTGCTGGTGGTGGGAGCAGAGCGGGGGACGCCGGTGA
CAGACAGTCCATGCTCTCGCCGCTGCCACAAACCGAGCAGCGGGACCCGG
CGCCGCAGCAGGATTTCTTACCCCTGCCTTTACACGAGGTGGAACGCGCT
CAGCTCGCCGAAGTAGAAGCAGACCTCAAGTCGGACCTGTTGTGGACTGT
GACGGATGGTGTCCCCCATTCGTACGCCGTGACCACCGCGGGACTTTCGT
TGATCCGTGCCTCGGAAGAATTCACCGAGCTTTTCCCTGTGCGGGACAGA
AGCAAGATGGTGGAAGGCAGTCGACAAGAGGCGGTGTTACCTTGTTTCCT
GTGGGCGAGCCGTCTAGTCCCGGCGGACCAGTTGGGTTTTTTTGATACGT
TGGCTTCGACCCTCCTAACGACGGGGGGGCGAGAGAAGATGTCGATGGTA
GGAAAGTGTGTCGATGGGAGAGGCAAGATTTTCTTGGCATTGATTCGATA
CCAGTTGATGATGCGAAAGGAAGGGAGAGACGCAATGGAGGCTTTCTCAT
GCCAGCGGTTGCCGCCTTCGCAGCATGTGGTACCATCGAGCGAAGAGGAG
GAGGAGGAGGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAGGAAGAGGA
GGAGGAATGGGAAGAGCGAAGGGAGGAGGATGAGAGAAACGGATGAGGAT
GAGAGAAACGGATGAACAATCAAGATGGAGCGCAGGAAGGACACTCCGTT
TACGGTTGTTGGACCAGCAAGTGCTTCTCCTTTAGAGGAGCCGGCCAAAA
ATACGACATGCGAGAGAAACACAGACAAGATGAAGCGAAAATACAGCGGT
TAAAAAAACAGATTTATAATAATGACAGTAACGGACAAAATTTGAAAGCG
AGTAAGTTTTTGAGGTGAAGGGCTGGGGGCTGCCTTCGCGAAAATTGAAG
GCGCCTGACTGGCTGTTACGAGTGTTTTTGTTTTGTTCGAGAAATCAAAA
TCAATACATTTAATCAAATGACATAAAGATCCCGTCATCAAGCGAAGTAC
CACAGAGTTCCTCAACGAAACGAAGAAAATAATAGCAGCAATATACTTTT
TTGTAGGGAGGAGGAACCAGGACTGGGGTTGATGAAAA
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protein sequence of NO27G00370.1

>NO27G00370.1-protein ID=NO27G00370.1-protein|Name=NO27G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MQGQQEGLVTIGSESGVCQQCRLSRVRCDRIIPCPRCQRMGLECVPQSRG
RGRPRVIKSEGGGGSGSGDQASARPASGAANPGGLSATMTRRPTRRMVPA
RWTSAGASSKAFGGLQQEQGGETAGRGEEQLFRNRHNQQQRQERPHGATN
NFAAARTQVCHEKEQGAEAEVQKEKEGSSTWRAGRDGGGDYKYRARMAQE
RVQGGGGAAWGTSSFSSASSAANPSSPSSSSSSSKSSRILRLPRYRKSDR
GNLLLEVSEAKFFNPVMAHAATGMLIAAINRVRVAGKLCQRKAHALLRTL
GARAMRRPDYAGRELLEMLSAMLKIGDWAEHLFGPKASMPPLVPLRPGSG
VRRGHGEGVGERAGGGSRAGDAGDRQSMLSPLPQTEQRDPAPQQDFLPLP
LHEVERAQLAEVEADLKSDLLWTVTDGVPHSYAVTTAGLSLIRASEEFTE
LFPVRDRSKMVEGSRQEAVLPCFLWASRLVPADQLGFFDTLASTLLTTGG
REKMSMVGKCVDGRGKIFLALIRYQLMMRKEGRDAMEAFSCQRLPPSQHV
VPSSEEEEEEEEEEEVEEEEEEEEEEWEERREEDERNG*
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mRNA from alignment at chr27:135769..138698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00370.1 ID=NO27G00370.1|Name=NO27G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2930bp|location=Sequence derived from alignment at chr27:135769..138698+ (Nannochloropsis oceanica)
CAGCAGGCGAAGAAACGCTTTCTCTTTCATCGAGCTCGAGGAACGATGCG
ATTGCCGCCGTTCGTCGGACCTTCGACGGGCCTTCCTTGGATGTGTATCA
CTGCGAGATGTGCACAGACAAAGTGTTGCATTCATATAGAAAACTCGTGA
CTTTCCTGCTTCTTGATTTTGTCCCGGGCGACTGTTGCCTTCTTCTCACC
CTCCCTTCCACCCCCCCTCTGACAGGTTCCTTGCATCGGCAGCGAGCGTG
CTACTCTTTACCGCGAGCTGCGGTCAAAAATGCAAGGCCAACAGGAGGGT
TTAGTTACGATCGGGAGTGAGTCTGGGGTCTGTCAGCAATGCCGTCTGTC
TAGGGTACGTCCACTTGAGGGGTCTAGCGCGCATTCCACACTACACCATG
TCACGGCGTTCTGCACAGGCGTTTTGTTTCTTAGCACCCTTCCCACACTT
CCCCATGCCCAATCATCCCTACAGGTTCGCTGTGACCGCATCATTCCTTG
TCCCAGGTATGACTCTCCTCAAATGGGACTGGTTGTCTTTGATTTGACAT
TTGGTGGCAGGACATACGTGCCACGCCCGCACTTTCAAAATTCTACGACC
AATACCTGTATGTGCTGTGTAAAGACCTGGTCAAATAGCGATCAATTAGG
GTTCACTTCCCTCTCGTATATACAGATGTCAGCGCATGGGTTTGGAGTGC
GTGCCGCAATCTCGCGGACGTGGCCGGCCTCGCGTGATCAAGTCAGGTAC
GGGGTGGCTGAGACCCGTCTATGTGGGCAAAGTGTTAGATTAAAAATAGC
GAACCCTTGTGTTGTACGCATTTTTACCCTCCAAACCCACGCTGACTGAA
TTCATTTGCATAAAACCTCTTTCAAATGCTCACACATACACCCGAACAGA
GGGGGGCGGCGGCTCGGGTTCAGGTGACCAGGCGAGCGCCAGGCCTGCAA
GCGGCGCAGCAAATCCCGGCGGTCTCAGTGCGACCATGACACGGAGGCCC
ACTCGTAGGATGGTACCGGCACGTTGGACATCAGCGGGGGCCTCGTCAAA
GGCGTTTGGGGGACTGCAGCAGGAGCAGGGTGGTGAGACGGCGGGGCGGG
GTGAGGAGCAGCTGTTTCGCAATCGACACAATCAGCAGCAGCGCCAGGAG
AGGCCTCACGGGGCAACGAATAATTTTGCGGCAGCAAGAACGCAGGTATG
CCATGAGAAAGAGCAAGGGGCCGAGGCCGAGGTGCAGAAAGAAAAGGAGG
GAAGCTCTACTTGGCGAGCAGGAAGGGATGGAGGTGGAGACTACAAATAT
CGCGCCAGGATGGCGCAGGAGAGAGTTCAAGGTGGTGGCGGAGCCGCATG
GGGAACAAGCTCGTTTTCCTCCGCATCCTCGGCAGCCAATCCCTCCTCCC
CGTCATCGTCATCATCTTCTTCAAAAAGCAGTAGAATCCTCAGACTCCCT
CGCTATCGCAAATCCGACCGCGGAAACTTGCTCCTGGAAGTCAGTGAAGC
TAAGTTTTTCAATCCTGTCATGGCGCACGCAGCCACGGGAATGCTGATCG
CAGCCATCAATCGTGTGCGGGTGGCAGGGAAACTCTGCCAAAGGAAAGCC
CACGCGCTGTTGCGAACTCTCGGAGCACGCGCGATGCGTCGGCCTGACTA
CGCTGGGCGCGAGCTGCTGGAGATGTTATCTGCTATGCTCAAGATAGGGG
ACTGGGCCGAGCACCTTTTTGGTCCCAAGGCCTCGATGCCACCCCTGGTG
CCGCTGCGCCCCGGATCAGGTGTGAGGAGGGGTCATGGAGAGGGCGTGGG
GGAGCGTGCTGGTGGTGGGAGCAGAGCGGGGGACGCCGGTGACAGACAGT
CCATGCTCTCGCCGCTGCCACAAACCGAGCAGCGGGACCCGGCGCCGCAG
CAGGATTTCTTACCCCTGCCTTTACACGAGGTGGAACGCGCTCAGCTCGC
CGAAGTAGAAGCAGACCTCAAGTCGGACCTGTTGTGGACTGTGACGGATG
GTGTCCCCCATTCGTACGCCGTGACCACCGCGGGACTTTCGTTGATCCGT
GCCTCGGAAGAATTCACCGAGCTTTTCCCTGTGCGGGACAGAAGCAAGAT
GGTGGAAGGCAGTCGACAAGAGGCGGTGTTACCTTGTTTCCTGTGGGCGA
GCCGTCTAGTCCCGGCGGACCAGTTGGGTTTTTTTGATACGTTGGCTTCG
ACCCTCCTAACGACGGGGGGGCGAGAGAAGATGTCGATGGTAGGAAAGTG
TGTCGATGGGAGAGGCAAGATTTTCTTGGCATTGATTCGATACCAGTTGA
TGATGCGAAAGGAAGGGAGAGACGCAATGGAGGCTTTCTCATGCCAGCGG
TTGCCGCCTTCGCAGCATGTGGTACCATCGAGCGAAGAGGAGGAGGAGGA
GGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAT
GGGAAGAGCGAAGGGAGGAGGATGAGAGAAACGGATGAGGATGAGAGAAA
CGGATGAACAATCAAGATGGAGCGCAGGAAGGACACTCCGTTTACGGTTG
TTGGACCAGCAAGTGCTTCTCCTTTAGAGGAGCCGGCCAAAAATACGACA
TGCGAGAGAAACACAGACAAGATGAAGCGAAAATACAGCGGTTAAAAAAA
CAGATTTATAATAATGACAGTAACGGACAAAATTTGAAAGCGAGTAAGTT
TTTGAGGTGAAGGGCTGGGGGCTGCCTTCGCGAAAATTGAAGGCGCCTGA
CTGGCTGTTACGAGTGTTTTTGTTTTGTTCGAGAAATCAAAATCAATACA
TTTAATCAAATGACATAAAGATCCCGTCATCAAGCGAAGTACCACAGAGT
TCCTCAACGAAACGAAGAAAATAATAGCAGCAATATACTTTTTTGTAGGG
AGGAGGAACCAGGACTGGGGTTGATGAAAA
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Coding sequence (CDS) from alignment at chr27:135769..138698+

>NO27G00370.1 ID=NO27G00370.1|Name=NO27G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1767bp|location=Sequence derived from alignment at chr27:135769..138698+ (Nannochloropsis oceanica)
ATGCAAGGCCAACAGGAGGGTTTAGTTACGATCGGGAGTGAGTCTGGGGT
CTGTCAGCAATGCCGTCTGTCTAGGGTTCGCTGTGACCGCATCATTCCTT
GTCCCAGATGTCAGCGCATGGGTTTGGAGTGCGTGCCGCAATCTCGCGGA
CGTGGCCGGCCTCGCGTGATCAAGTCAGAGGGGGGCGGCGGCTCGGGTTC
AGGTGACCAGGCGAGCGCCAGGCCTGCAAGCGGCGCAGCAAATCCCGGCG
GTCTCAGTGCGACCATGACACGGAGGCCCACTCGTAGGATGGTACCGGCA
CGTTGGACATCAGCGGGGGCCTCGTCAAAGGCGTTTGGGGGACTGCAGCA
GGAGCAGGGTGGTGAGACGGCGGGGCGGGGTGAGGAGCAGCTGTTTCGCA
ATCGACACAATCAGCAGCAGCGCCAGGAGAGGCCTCACGGGGCAACGAAT
AATTTTGCGGCAGCAAGAACGCAGGTATGCCATGAGAAAGAGCAAGGGGC
CGAGGCCGAGGTGCAGAAAGAAAAGGAGGGAAGCTCTACTTGGCGAGCAG
GAAGGGATGGAGGTGGAGACTACAAATATCGCGCCAGGATGGCGCAGGAG
AGAGTTCAAGGTGGTGGCGGAGCCGCATGGGGAACAAGCTCGTTTTCCTC
CGCATCCTCGGCAGCCAATCCCTCCTCCCCGTCATCGTCATCATCTTCTT
CAAAAAGCAGTAGAATCCTCAGACTCCCTCGCTATCGCAAATCCGACCGC
GGAAACTTGCTCCTGGAAGTCAGTGAAGCTAAGTTTTTCAATCCTGTCAT
GGCGCACGCAGCCACGGGAATGCTGATCGCAGCCATCAATCGTGTGCGGG
TGGCAGGGAAACTCTGCCAAAGGAAAGCCCACGCGCTGTTGCGAACTCTC
GGAGCACGCGCGATGCGTCGGCCTGACTACGCTGGGCGCGAGCTGCTGGA
GATGTTATCTGCTATGCTCAAGATAGGGGACTGGGCCGAGCACCTTTTTG
GTCCCAAGGCCTCGATGCCACCCCTGGTGCCGCTGCGCCCCGGATCAGGT
GTGAGGAGGGGTCATGGAGAGGGCGTGGGGGAGCGTGCTGGTGGTGGGAG
CAGAGCGGGGGACGCCGGTGACAGACAGTCCATGCTCTCGCCGCTGCCAC
AAACCGAGCAGCGGGACCCGGCGCCGCAGCAGGATTTCTTACCCCTGCCT
TTACACGAGGTGGAACGCGCTCAGCTCGCCGAAGTAGAAGCAGACCTCAA
GTCGGACCTGTTGTGGACTGTGACGGATGGTGTCCCCCATTCGTACGCCG
TGACCACCGCGGGACTTTCGTTGATCCGTGCCTCGGAAGAATTCACCGAG
CTTTTCCCTGTGCGGGACAGAAGCAAGATGGTGGAAGGCAGTCGACAAGA
GGCGGTGTTACCTTGTTTCCTGTGGGCGAGCCGTCTAGTCCCGGCGGACC
AGTTGGGTTTTTTTGATACGTTGGCTTCGACCCTCCTAACGACGGGGGGG
CGAGAGAAGATGTCGATGGTAGGAAAGTGTGTCGATGGGAGAGGCAAGAT
TTTCTTGGCATTGATTCGATACCAGTTGATGATGCGAAAGGAAGGGAGAG
ACGCAATGGAGGCTTTCTCATGCCAGCGGTTGCCGCCTTCGCAGCATGTG
GTACCATCGAGCGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGA
GGAGGAGGAAGAGGAAGAGGAGGAGGAATGGGAAGAGCGAAGGGAGGAGG
ATGAGAGAAACGGATGA
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Synonyms
Publications