NO27G00340, NO27G00340 (gene) Nannochloropsis oceanica

Overview
NameNO27G00340
Unique NameNO27G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr27:125870..127403 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:125870..127403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G00340 vs. NCBI_GenBank
Match: XP_005852416.1 (hypothetical protein NGA_0702000, partial [Nannochloropsis gaditana CCMP526] >EKU23416.1 hypothetical protein NGA_0702000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.8 bits (395), Expect = 8.500e-35
Identity = 67/87 (77.01%), Postives = 77/87 (88.51%), Query Frame = 0 
Query:   34 TFPCRKHKVHRHCALSYIKHCLSKRLVPIPCPAFPFDGFHLKDVQVYGCLSKEEEQEQYKRVKEERRVATTKGLVFCPTPGCNTVLE 121
            +FPCR+HK+HR CALSYI+HCL+ RLVP+PCPAFPFDG+ + D QVYGCLSKEEEQ QY RVKEE+RVA+T GL FCPTPGC TVLE
Sbjct:   49 SFPCRRHKIHRTCALSYIRHCLATRLVPVPCPAFPFDGYCMTDAQVYGCLSKEEEQRQYDRVKEEKRVASTPGLAFCPTPGCGTVLE 135
The following BLAST results are available for this feature:
BLAST of NO27G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852416.18.500e-3577.01hypothetical protein NGA_0702000, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00340.1NO27G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00340.1NO27G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00340 ID=NO27G00340|Name=NO27G00340|organism=Nannochloropsis oceanica|type=gene|length=1534bp
GATGTCGGTGATAGTTCTTTTTGCCGTTCCTACATCCCTCTAGAACTATC
GCATGCAACCTGCGTCCTCTAGGACTTGCATACGAGGGGGAGCCTTCCAA
CAATAGAATGTTGCCTATTCACCCCTTATTCCTTGTCCGAGTTTTACTAG
CGACGGTAGGCATGTCTTCATCCTTCCGCTGCTGGCCATCCTCTCCATCA
CACCCATAAAGTTGCTGATGTTCTCACCATCCATACACTAACGCCCGCTT
CCCACAAAGCTACTGTGTGCATGTGAGTGTCATCAATTTTTTACGTGCCC
AAAACCTTCTCCATTCCATCTTCATCCTCCCATCACACATTTCCCTCGTT
CCTTGCTTCTTTCGACACGGGCACATAGACACAGGCCATATCCGACGCAT
GTCTATCCCTGTACCGCCCTCCTCGTCCTCGTCCTCTTCTTTCCCCGCTT
CCAGCTGTCCCATCTGTCTCGAGCCGCTCTCTCTCTCCAATCTTCTCACC
TTCCCATGCAGGAAACACAAAGTTCACCGCCATTGTGCGCTTTCTTACAT
CAAGCACTGTCTCTCCAAGCGGCTTGTGCCTATTCCCTGTCCTGCTTTTC
CGTTTGACGGATTTCACCTGAAAGATGTACAGgtattaataaaatggaat
gaaaaagagaataagtgacagtgcctcaactccgcctcttctcatccttc
cccacactccttcctgctcccctttccttcgcttcggtttgaacgaaggc
gtagatttccttcctagagttgacatgtttatatatactcatctaattcg
gcttttgtgttcctaacattgcagGTATATGGCTGTCTGTCGAAGGAAGA
GGAACAAGAGCAGTACAAGAGGGTGAAGGAGGAAAGACGGGTGGCAACGA
CAAAAGGACTGGTATTTTGCCCGACCCCTGGGTGTAACACGGTTTTGGAG
GTGGAGGAAGAGGAGGGGGAGGGGGAGGAGGAGGAACAGGAGGGAAGgtg
ggatagagaggaggaggggatggagaaggaggggagggggggagagaagg
aggaggagcagaagaaagaagtgggaaagaggcaaggagatagagaggag
gaggaggagaaggaggaagagaaggaaacatttgagactgttgaaatcag
gagaataggaatgaaaaagaagagtgaagaaggtatagaaggagaggctt
cagcaaaaacacaaaaaatagacacaacagTGTCACCACTACCATCAGCA
GCAGCACCACCACCACCACCACCACCAGCACCCTTATCACCTGCAGTAGC
ATCTCTAGCAGTAGCAGCAGCACTTCCAGCACCAGCATCGTCAGAACTGG
CAGCAGCAGCAACAACAACAACAACAACAACCAAACAGAAACCTCCACGC
GTCAGCTGCCCATCGTGCAACCAACTTTACCTCCCCCCTTCCCTCCGTTC
CGCCTCGGACCGACAACTCCATTCGATGGCCCTTGCCATGAACTACCGTC
CTTGTCCTCAATGCTTCACCTACATTTCCGGTGA
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protein sequence of NO27G00340.1

>NO27G00340.1-protein ID=NO27G00340.1-protein|Name=NO27G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSIPVPPSSSSSSSFPASSCPICLEPLSLSNLLTFPCRKHKVHRHCALSY
IKHCLSKRLVPIPCPAFPFDGFHLKDVQVYGCLSKEEEQEQYKRVKEERR
VATTKGLVFCPTPGCNTVLEVEEEEGEGEEEEQEGSVTTTISSSTTTTTT
TSTLITCSSISSSSSSTSSTSIVRTGSSSNNNNNNNQTETSTRQLPIVQP
TLPPPFPPFRLGPTTPFDGPCHELPSLSSMLHLHFR*
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Synonyms
Publications