NO27G00340.1, NO27G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00340.1
Unique NameNO27G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1109
Alignment locationchr27:125870..127403 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:125870..127403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00340.1 vs.
Match: XP_005852416.1 (hypothetical protein NGA_0702000, partial [Nannochloropsis gaditana CCMP526]; EKU23416.1 hypothetical protein NGA_0702000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 176.8 bits (447), Expect = 8.000e-41
Identity = 91/144 (63.19%), Postives = 106/144 (73.61%), Query Frame = 0 
Query:    2 SIPVPPSSSSSSSFPASSCPICLE---PLSLSNLLTFPCRKHKVHRHCALSYIKHCLSKRLVPIPCPAFPFDGFHLKDVQVYGCLSKEEEQEQYKRVKEERRVATTKGLVFCPTPGCNTVLEVEEE-------EGEGEEEEQEG 136
            +I +P S    SS   S+C ICL    P   + LL+FPCR+HK+HR CALSYI+HCL+ RLVP+PCPAFPFDG+ + D QVYGCLSKEEEQ QY RVKEE+RVA+T GL FCPTPGC TVLEV EE       EG G EEE+EG
Sbjct:   14 TISIPSSLDPPSSSATSTCSICLASLPPPPTTLLLSFPCRRHKIHRTCALSYIRHCLATRLVPVPCPAFPFDGYCMTDAQVYGCLSKEEEQRQYDRVKEEKRVASTPGLAFCPTPGCGTVLEVGEEGEEEEGKEGGGREEEEEG 157
The following BLAST results are available for this feature:
BLAST of NO27G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852416.18.000e-4163.19hypothetical protein NGA_0702000, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00340NO27G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00340.1NO27G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00340.1.cds1NO27G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00340.1.cds2NO27G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00340.1.cds3NO27G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00340.1 ID=NO27G00340.1|Name=NO27G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
GATGTCGGTGATAGTTCTTTTTGCCGTTCCTACATCCCTCTAGAACTATC
GCATGCAACCTGCGTCCTCTAGGACTTGCATACGAGGGGGAGCCTTCCAA
CAATAGAATGTTGCCTATTCACCCCTTATTCCTTGTCCGAGTTTTACTAG
CGACGGTAGGCATGTCTTCATCCTTCCGCTGCTGGCCATCCTCTCCATCA
CACCCATAAAGTTGCTGATGTTCTCACCATCCATACACTAACGCCCGCTT
CCCACAAAGCTACTGTGTGCATGTGAGTGTCATCAATTTTTTACGTGCCC
AAAACCTTCTCCATTCCATCTTCATCCTCCCATCACACATTTCCCTCGTT
CCTTGCTTCTTTCGACACGGGCACATAGACACAGGCCATATCCGACGCAT
GTCTATCCCTGTACCGCCCTCCTCGTCCTCGTCCTCTTCTTTCCCCGCTT
CCAGCTGTCCCATCTGTCTCGAGCCGCTCTCTCTCTCCAATCTTCTCACC
TTCCCATGCAGGAAACACAAAGTTCACCGCCATTGTGCGCTTTCTTACAT
CAAGCACTGTCTCTCCAAGCGGCTTGTGCCTATTCCCTGTCCTGCTTTTC
CGTTTGACGGATTTCACCTGAAAGATGTACAGGTATATGGCTGTCTGTCG
AAGGAAGAGGAACAAGAGCAGTACAAGAGGGTGAAGGAGGAAAGACGGGT
GGCAACGACAAAAGGACTGGTATTTTGCCCGACCCCTGGGTGTAACACGG
TTTTGGAGGTGGAGGAAGAGGAGGGGGAGGGGGAGGAGGAGGAACAGGAG
GGAAGTGTCACCACTACCATCAGCAGCAGCACCACCACCACCACCACCAC
CAGCACCCTTATCACCTGCAGTAGCATCTCTAGCAGTAGCAGCAGCACTT
CCAGCACCAGCATCGTCAGAACTGGCAGCAGCAGCAACAACAACAACAAC
AACAACCAAACAGAAACCTCCACGCGTCAGCTGCCCATCGTGCAACCAAC
TTTACCTCCCCCCTTCCCTCCGTTCCGCCTCGGACCGACAACTCCATTCG
ATGGCCCTTGCCATGAACTACCGTCCTTGTCCTCAATGCTTCACCTACAT
TTCCGGTGA
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protein sequence of NO27G00340.1

>NO27G00340.1-protein ID=NO27G00340.1-protein|Name=NO27G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSIPVPPSSSSSSSFPASSCPICLEPLSLSNLLTFPCRKHKVHRHCALSY
IKHCLSKRLVPIPCPAFPFDGFHLKDVQVYGCLSKEEEQEQYKRVKEERR
VATTKGLVFCPTPGCNTVLEVEEEEGEGEEEEQEGSVTTTISSSTTTTTT
TSTLITCSSISSSSSSTSSTSIVRTGSSSNNNNNNNQTETSTRQLPIVQP
TLPPPFPPFRLGPTTPFDGPCHELPSLSSMLHLHFR*
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mRNA from alignment at chr27:125870..127403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00340.1 ID=NO27G00340.1|Name=NO27G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr27:125870..127403- (Nannochloropsis oceanica)
GATGTCGGTGATAGTTCTTTTTGCCGTTCCTACATCCCTCTAGAACTATC
GCATGCAACCTGCGTCCTCTAGGACTTGCATACGAGGGGGAGCCTTCCAA
CAATAGAATGTTGCCTATTCACCCCTTATTCCTTGTCCGAGTTTTACTAG
CGACGGTAGGCATGTCTTCATCCTTCCGCTGCTGGCCATCCTCTCCATCA
CACCCATAAAGTTGCTGATGTTCTCACCATCCATACACTAACGCCCGCTT
CCCACAAAGCTACTGTGTGCATGTGAGTGTCATCAATTTTTTACGTGCCC
AAAACCTTCTCCATTCCATCTTCATCCTCCCATCACACATTTCCCTCGTT
CCTTGCTTCTTTCGACACGGGCACATAGACACAGGCCATATCCGACGCAT
GTCTATCCCTGTACCGCCCTCCTCGTCCTCGTCCTCTTCTTTCCCCGCTT
CCAGCTGTCCCATCTGTCTCGAGCCGCTCTCTCTCTCCAATCTTCTCACC
TTCCCATGCAGGAAACACAAAGTTCACCGCCATTGTGCGCTTTCTTACAT
CAAGCACTGTCTCTCCAAGCGGCTTGTGCCTATTCCCTGTCCTGCTTTTC
CGTTTGACGGATTTCACCTGAAAGATGTACAGGTATTAATAAAATGGAAT
GAAAAAGAGAATAAGTGACAGTGCCTCAACTCCGCCTCTTCTCATCCTTC
CCCACACTCCTTCCTGCTCCCCTTTCCTTCGCTTCGGTTTGAACGAAGGC
GTAGATTTCCTTCCTAGAGTTGACATGTTTATATATACTCATCTAATTCG
GCTTTTGTGTTCCTAACATTGCAGGTATATGGCTGTCTGTCGAAGGAAGA
GGAACAAGAGCAGTACAAGAGGGTGAAGGAGGAAAGACGGGTGGCAACGA
CAAAAGGACTGGTATTTTGCCCGACCCCTGGGTGTAACACGGTTTTGGAG
GTGGAGGAAGAGGAGGGGGAGGGGGAGGAGGAGGAACAGGAGGGAAGGTG
GGATAGAGAGGAGGAGGGGATGGAGAAGGAGGGGAGGGGGGGAGAGAAGG
AGGAGGAGCAGAAGAAAGAAGTGGGAAAGAGGCAAGGAGATAGAGAGGAG
GAGGAGGAGAAGGAGGAAGAGAAGGAAACATTTGAGACTGTTGAAATCAG
GAGAATAGGAATGAAAAAGAAGAGTGAAGAAGGTATAGAAGGAGAGGCTT
CAGCAAAAACACAAAAAATAGACACAACAGTGTCACCACTACCATCAGCA
GCAGCACCACCACCACCACCACCACCAGCACCCTTATCACCTGCAGTAGC
ATCTCTAGCAGTAGCAGCAGCACTTCCAGCACCAGCATCGTCAGAACTGG
CAGCAGCAGCAACAACAACAACAACAACAACCAAACAGAAACCTCCACGC
GTCAGCTGCCCATCGTGCAACCAACTTTACCTCCCCCCTTCCCTCCGTTC
CGCCTCGGACCGACAACTCCATTCGATGGCCCTTGCCATGAACTACCGTC
CTTGTCCTCAATGCTTCACCTACATTTCCGGTGA
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Coding sequence (CDS) from alignment at chr27:125870..127403-

>NO27G00340.1 ID=NO27G00340.1|Name=NO27G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr27:125870..127403- (Nannochloropsis oceanica)
ATGTCTATCCCTGTACCGCCCTCCTCGTCCTCGTCCTCTTCTTTCCCCGC
TTCCAGCTGTCCCATCTGTCTCGAGCCGCTCTCTCTCTCCAATCTTCTCA
CCTTCCCATGCAGGAAACACAAAGTTCACCGCCATTGTGCGCTTTCTTAC
ATCAAGCACTGTCTCTCCAAGCGGCTTGTGCCTATTCCCTGTCCTGCTTT
TCCGTTTGACGGATTTCACCTGAAAGATGTACAGGTATATGGCTGTCTGT
CGAAGGAAGAGGAACAAGAGCAGTACAAGAGGGTGAAGGAGGAAAGACGG
GTGGCAACGACAAAAGGACTGGTATTTTGCCCGACCCCTGGGTGTAACAC
GGTTTTGGAGGTGGAGGAAGAGGAGGGGGAGGGGGAGGAGGAGGAACAGG
AGGGAAGTGTCACCACTACCATCAGCAGCAGCACCACCACCACCACCACC
ACCAGCACCCTTATCACCTGCAGTAGCATCTCTAGCAGTAGCAGCAGCAC
TTCCAGCACCAGCATCGTCAGAACTGGCAGCAGCAGCAACAACAACAACA
ACAACAACCAAACAGAAACCTCCACGCGTCAGCTGCCCATCGTGCAACCA
ACTTTACCTCCCCCCTTCCCTCCGTTCCGCCTCGGACCGACAACTCCATT
CGATGGCCCTTGCCATGAACTACCGTCCTTGTCCTCAATGCTTCACCTAC
ATTTCCGGTGA
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Synonyms
Publications