NO27G00280, NO27G00280 (gene) Nannochloropsis oceanica

Overview
NameNO27G00280
Unique NameNO27G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3943
Alignment locationchr27:98679..103433 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat protein 14 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:98679..103433 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
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BLAST of NO27G00280 vs. NCBI_GenBank
Match: CBJ29259.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.6 bits (174), Expect = 6.800e-9
Identity = 50/174 (28.74%), Postives = 71/174 (40.80%), Query Frame = 0 
Query:  217 SYHATLLSDRTYHNPHALEGMAAVYGLL-PARXXXXXXXXXXXXXXXXXNAP--------------------------FYCEEIRALQNKRYADGKVAAGVERNRQGLYLEAIQLYEQALSSCPDHVDALXXXXXXXXXXXXXXXXXXXXXXXXKVDPEAENARSYLKTIQEKL 364
            SY+ TLL+D+++HNPHA E MA  +G+L PA                   A                           ++ + +R  QN+ +AD +V  GVE  R+G +  AI  Y QAL  CPDH D L                         V+P+  NA SYLK  + ++
Sbjct:  190 SYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGEADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRM 363
The following BLAST results are available for this feature:
BLAST of NO27G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29259.16.800e-928.74conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00280.2NO27G00280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G00280.1NO27G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00280.2NO27G00280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G00280.1NO27G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00280 ID=NO27G00280|Name=NO27G00280|organism=Nannochloropsis oceanica|type=gene|length=3943bp
ATGGAGAAGGAGAAGGAGGACGACGAGGTGGAAGAAATATGCCTGCCGCC
TCGGACAGACGATGAGAGGCCTTCTCGATCTGGGCGGCAGCAACAGCAGC
AGCAGCAGCCTTGTTCCCACAGGAGCAAGAGCAGGAGCAGGAGCAGCAGC
AAAAGCCGAAATAGGGGTAGAGGTAGCAGGATACGGAGGCCAAGGAGTGA
AGGAGATAGGGCTGACGAGGACGAAGAAAAGAGGATAGAGGAGGAGGAGG
ACCGAAGGATGGGAGCACGGATCGCTAGCCTTGCGCGGGGGCAGGGAACA
GGAGGGATGCGGCTGCGTGAGgtttgtaatagctctatctccccctctct
tcattcccgcccttctaccctcctgtcctctttccttttccttcctaccc
agccaatcgactcctttctctccctccctctctctctttcctccctctcc
tctaaatcacacagAGCCTCTCTTTCATTCTTCGTGACCGGGCCTCTGAA
GCCATCACAGGAGCAGGGAATGGTGGGGGAAGAGGGAGGGGGCGGGAAGG
GGGAATGCACCACTCGTCAAGTGCGGCGTCGCTCTCGGGAGAGGAAGCTG
ACACGTTGTCCTTCTGTTGGATGCCTGCCATTGAGGAGTTCGTGGCGAGG
GAGGGAGAGAGGAGGAGGAGGAGGAGCAGCGGGAGGAGGAAGGAGAGGAG
AAGCAACCAGGTGGAGGAGGAGGGGAAGGAGGGGAAGGAGGAGGAGAAGG
AGGAGGAGGAGGAAGGAGAGGAGGGAGAGCTGCCACGAAAGgtaaggttg
agctgaacgctttgtttacctgcgtttggcctctaatccctccctccctc
cctccctccctgatctcccttcagTCATACCATGCCACGTTGCTCTCAGA
CAGGACGTACCACAATCCTCACGCGCTAGAGGGAATGGCAGCCGTCTACG
GCTTGTTGCCTGCGCGGAGACAGCATCGgtgagggagggagggagggagg
gagggagagagggagggagggagggagggagggagggtgacagagagcat
cggtaagggttgaagggagggagggagggagggagggagggaggggcctg
catgaagactgcatacttgaattgttattcttctttcttcccccccctcc
ctctctcctttcccttttcccccgaaacatgttacccgatgatcgcttat
ttccctctatccctccctccctccctcgctccctcgctccctccctccct
acctccctctagCTCCCTCCTCCTCCCTCCTCCTCCTCCTCCACCTCGAG
AAAACGCTCCCTTTTACTGCGAGGAGATCCGAGCTCTTCAAAACAAgtag
gaaacgagggagggaaggagggagggagggagcgagggaggggaaaagag
aggaaaccccatcacttgagtgattcttgcaggggagatctcgcgcccct
taatttatttaccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctctcttcttatcagGCGATATGCGGATGGGAAAGTG
GCTGCGGGAGTGGAGAGAAATCGACAAGGCTTGTACCTCGAGGCCATCCA
gtaggtggagggagggagggagggaggaaggaagggagggagggagggag
gaagggaggagggaggaagggagggagggaggagaggattactaaccaca
tgtacaatgtgaaggaaaaggggaagacgcgctagtgggaaaaagggaga
gaggcgacagccatttaattattgtaactcatataaacctacatatttac
atctctataaacctgaataatcttattattttaatcccttttttcggttc
ctgccgaagGTTGTACGAGCAAGCGTTATCCTCCTGCCCCGACCACGTCG
ACGCTCTGGTGGCACGgtgcgcactcccaccctccctccctccctccctc
cttccctccctccatttcctttctccgaatacgcccccccccttctgttt
gtgctctcccttcctccttccttccctttctccttcttctcctccctcct
tccctcccttcctccttcattttcccccttgcccccattccctccaagcc
actgcttgtcatgaggatcattcaccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccagAGGTGCGGCTCGCGCC
AATTTGGGTTCCCTTAGGAAGGCCGTCGATGACTTCGAGGAGGCGCTCAA
Ggtgagggagagaaggaaggaaggagggagggagggagggagggagggaa
ggaaggaaggcaaggtgaatcatcgccctctcgttctcatcttgatgtgc
ttcactcccttccctcccttccctcccttcccctctccttcccgccctag
GTCGATCCTGAGGCAGAAAATGCGCGAAGCTACCTCAAGACAATCCAAGA
GAAGCTTTCCATCTCTGCCACCTCTTCATCTCTCCCACCCTCCACTTCCT
CTCCCTCCTCCTCCTCTTTTCGCGGTAGAGCGATGGTCAGACGAACATCA
ACAACAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGG
AGAAGGGAGGGACGTCGCTCTCTCTTCGGTCTTCCGTCGCTTGCCCTTTA
CCTCCTCCTTCTCACCCCCACGCACGGCTCGAGTGAATGAGAGgtgagta
agggagggaggcaggggaggcgggacggggggagggcgatgtgtcgtgtt
cttcccagccctttctccctccctccctccatccttgactattctatttg
atagtttgttcatatctatacttaatttttgtcttggttttttatattgt
tttaattattttatgtcttttcagattccatatcgggtggcgaaggaaga
aaagtgcctggacactaccacatgtctcttggaacagcagaatctcgccc
ctccctccttccctccctcgatcccgccctccctcccttccttgaaaact
atctcacctctttccccctcccttccttgctctgcttctttctccctctt
cccagAGTCCCCTCCTCCTCCTCCCCTTCCTCCTCCTCCTTGCACCGGAA
GGTGGAGGAGGAGGACGAGTACCTCCAAACGGCCATTCAACGTCTCGAGA
CGTTGATTGGAGGGAGAGGGAGGGAGGAGGGGAAAAGGGGAGGAGAAGGG
AAGAGAGAAAATGGCAAGGGGAGGAGTAGAAAGGAGAAGGAGAGAAAGAG
GAAGAGGAGAAAGAAGGAGAAAAAGCAAGGAAAGGAGGAGGAGGAGGAAG
AGGAGGAAAAGGGTAAGAGGAAGAAGAAGAAAAGAAAGAAGGAGAAGAAG
AGGTGGAAGGATGCAGGCAGGGGGGGGAAAGAAATAAGCAAGACCAGTGG
TGGTAGTGGTGATGGCAAAAGCAGCGGGAGAAAGAGGAGAAGAAGCCCGg
tacgtagggaaggaggcaggggggggaaggtagggaaggagagaggaaga
agtagaagaaaggtgcggttgtaaattgtgtgacgcctcttctaacatgt
gttgtgaaccaaaacttacgcgcacagAGAAACGAGGGGAATGAGGAGAC
CCAGTCCAAGGTCAGAAGGAAAGGGAGCCATGCTGATTCGAGCGCGTCTT
CTTTTTCCTCCTCCCCCTCGTCGTCGCCAGCCTCGGGAAACGAGATTGAG
AAGGAGAGAGAAGAAAAAAGCTGAGGAGAGGATTAAGTCAGAGTTCAGGA
AAGGAAAGGGAGTGGAGGATGAATGAAAAGAGTGTGGACGGGGAAGGAGG
ACGATCGAAAGCATGTGAATAACCAGACGTATGTGCGCTATCTTGGGCGC
GACGCAAATATATAAAATGAACCAACAAGCACTACTCTTTGGA
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protein sequence of NO27G00280.2

>NO27G00280.2-protein ID=NO27G00280.2-protein|Name=NO27G00280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MEKEKEDDEVEEICLPPRTDDERPSRSGRQQQQQQQPCSHRSKSRSRSSS
KSRNRGRGSRIRRPRSEGDRADEDEEKRIEEEEDRRMGARIASLARGQGT
GGMRLRESLSFILRDRASEAITGAGNGGGRGRGREGGMHHSSSAASLSGE
EADTLSFCWMPAIEEFVAREGERRRRRSSGRRKERRSNQVEEEGKEGKEE
EKEEEEEGEEGELPRKSYHATLLSDRTYHNPHALEGMAAVYGLLPARRQH
RSLLLPPPPPPPRENAPFYCEEIRALQNKRYADGKVAAGVERNRQGLYLE
AIQLYEQALSSCPDHVDALVARGAARANLGSLRKAVDDFEEALKVDPEAE
NARSYLKTIQEKLSISATSSSLPPSTSSPSSSSFRGRAMVRRTSTTGGGG
GGRGGGGGGGGEGRDVALSSVFRRLPFTSSFSPPRTARVNER*
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protein sequence of NO27G00280.1

>NO27G00280.1-protein ID=NO27G00280.1-protein|Name=NO27G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MEKEKEDDEVEEICLPPRTDDERPSRSGRQQQQQQQPCSHRSKSRSRSSS
KSRNRGRGSRIRRPRSEGDRADEDEEKRIEEEEDRRMGARIASLARGQGT
GGMRLRESLSFILRDRASEAITGAGNGGGRGRGREGGMHHSSSAASLSGE
EADTLSFCWMPAIEEFVAREGERRRRRSSGRRKERRSNQVEEEGKEGKEE
EKEEEEEGEEGELPRKSYHATLLSDRTYHNPHALEGMAAVYGLLPARRQH
RSLLLPPPPPPPRENAPFYCEEIRALQNKRYADGKVAAGVERNRQGLYLE
AIQLYEQALSSCPDHVDALVARGAARANLGSLRKAVDDFEEALKVDPEAE
NARSYLKTIQEKLSISATSSSLPPSTSSPSSSSFRGRAMVRRTSTTGGGG
GGRGGGGGGGGEGRDVALSSVFRRLPFTSSFSPPRTARVNERVPSSSSPS
SSSLHRKVEEEDEYLQTAIQRLETLIGGRGREEGKRGGEGKRENGKGRSR
KEKERKRKRRKKEKKQGKEEEEEEEEKGKRKKKKRKKEKKRWKDAGRGGK
EISKTSGGSGDGKSSGRKRRRSPRNEGNEETQSKVRRKGSHADSSASSFS
SSPSSSPASGNEIEKEREEKS*
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Synonyms
Publications