NO27G00280.2, NO27G00280.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00280.2
Unique Name	NO27G00280.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2442
Alignment location	chr27:99574..103433 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:99574..103433 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00280.2 vs.
Match: CBJ29259.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.0 bits (214), Expect = 1.600e-13
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 0

Query:  264 ENAPFYCEEIRALQNKRYADGKVAAGVERNRQGLYLEAIQLYEQALSSCPDHVDALVARGAARANLGSLRKAVDDFEEALKVDPEAENARSYLKTIQEKLSISATSSSLPPSTSSPSSSSFRGR 388
            E+  ++ + +R  QN+ +AD +V  GVE  R+G +  AI  Y QAL  CPDH D LVARGAA A  G LR+AV D   AL V+P+  NA SYLK  + ++       +   S ++ ++++F  R
Sbjct:  264 EDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRMERQEARETPGASATTGNTTTFESR 387

The following BLAST results are available for this feature:

BLAST of NO27G00280.2 vs.

BLAST of NO27G00280.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ29259.1	1.600e-13	40.32	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00280	NO27G00280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00280.2	NO27G00280.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00280.2.cds1	NO27G00280.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds2	NO27G00280.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds3	NO27G00280.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds4	NO27G00280.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds5	NO27G00280.2.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds6	NO27G00280.2.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds7	NO27G00280.2.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00280.2.cds8	NO27G00280.2.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:99574..103433-
coding sequence from alignment at chr27:99574..103433-

mRNA sequence

>NO27G00280.2 ID=NO27G00280.2|Name=NO27G00280.2|organism=Nannochloropsis oceanica|type=mRNA|length=2442bp
CTTGGCTACACCGGCGGGGAAGTGGCCGGGAGATGAAGGGCCACCGTGAG
AGGCCAATATAGTGATGCTGAGGCACATTCCTCGTCCCTCACATGAGACA
CAAGCCGACGAATGGAAGGGTCGGCAAAGCAGTAATCATCCACCTTTCCT
ACCCTTCCTGCCCTCCAACCCTGCCTACCGTATGACGTGACTACCACCAA
GCCATGCACCGTCTCTCCCGCCAAATACGTGGCGCGTGACAGGCGGCAAT
GCACGGCCAGACGCCGTTTCTTCGGGTTGTGGAGGCTGGAATGCTGCTGT
TGTTGCTGCTGCTGCTGGGAGACGCCGCCGCTGCCCATGGACGAAGGAGG
GAGGAAAAGTCACAAAGGGGGGTCAGGCAAAGGGGAGACAGCTGGCTGGT
GGGCGCCCAGTGTTGATAACTGTAAAGCACGGATGTTTGTATTAGCTCTT
GTTTGGAGGTGGACTGGCGTAAAGGAGGAGAGTTAGGGAGGAGGCGACTG
AACCAACGTTGCGCTCCCTTTGGCGAGTCCAGCATCGTTCAGAGGTTACA
CACCCCCTCACCACGTACCAACCCCTTCACCTTACGCACAACACCACAGC
AAAGAAGGGCCGCATGAGTAGCAGCTCGCGGGCAACAAGCGAGTGGAGGA
GGAGGCACGAGACCAAACTATAAAGGAGGGAGGGAGGGAGTTGCAGCAGT
ACAGTCAAGCCTCCATACGCCACACCATCGTTCCCCTCGCATCCTTTCGT
CAGCCATTCAATAAATATCTGCGGCCACAGAGACACCAGCACCCGCACCA
GCACCAGCACGGATGGAGAAGGAGAAGGAGGACGACGAGGTGGAAGAAAT
ATGCCTGCCGCCTCGGACAGACGATGAGAGGCCTTCTCGATCTGGGCGGC
AGCAACAGCAGCAGCAGCAGCCTTGTTCCCACAGGAGCAAGAGCAGGAGC
AGGAGCAGCAGCAAAAGCCGAAATAGGGGTAGAGGTAGCAGGATACGGAG
GCCAAGGAGTGAAGGAGATAGGGCTGACGAGGACGAAGAAAAGAGGATAG
AGGAGGAGGAGGACCGAAGGATGGGAGCACGGATCGCTAGCCTTGCGCGG
GGGCAGGGAACAGGAGGGATGCGGCTGCGTGAGAGCCTCTCTTTCATTCT
TCGTGACCGGGCCTCTGAAGCCATCACAGGAGCAGGGAATGGTGGGGGAA
GAGGGAGGGGGCGGGAAGGGGGAATGCACCACTCGTCAAGTGCGGCGTCG
CTCTCGGGAGAGGAAGCTGACACGTTGTCCTTCTGTTGGATGCCTGCCAT
TGAGGAGTTCGTGGCGAGGGAGGGAGAGAGGAGGAGGAGGAGGAGCAGCG
GGAGGAGGAAGGAGAGGAGAAGCAACCAGGTGGAGGAGGAGGGGAAGGAG
GGGAAGGAGGAGGAGAAGGAGGAGGAGGAGGAAGGAGAGGAGGGAGAGCT
GCCACGAAAGTCATACCATGCCACGTTGCTCTCAGACAGGACGTACCACA
ATCCTCACGCGCTAGAGGGAATGGCAGCCGTCTACGGCTTGTTGCCTGCG
CGGAGACAGCATCGCTCCCTCCTCCTCCCTCCTCCTCCTCCTCCACCTCG
AGAAAACGCTCCCTTTTACTGCGAGGAGATCCGAGCTCTTCAAAACAAGC
GATATGCGGATGGGAAAGTGGCTGCGGGAGTGGAGAGAAATCGACAAGGC
TTGTACCTCGAGGCCATCCAGTTGTACGAGCAAGCGTTATCCTCCTGCCC
CGACCACGTCGACGCTCTGGTGGCACGAGGTGCGGCTCGCGCCAATTTGG
GTTCCCTTAGGAAGGCCGTCGATGACTTCGAGGAGGCGCTCAAGGTCGAT
CCTGAGGCAGAAAATGCGCGAAGCTACCTCAAGACAATCCAAGAGAAGCT
TTCCATCTCTGCCACCTCTTCATCTCTCCCACCCTCCACTTCCTCTCCCT
CCTCCTCCTCTTTTCGCGGTAGAGCGATGGTCAGACGAACATCAACAACA
GGAGGAGGAGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGG
GAGGGACGTCGCTCTCTCTTCGGTCTTCCGTCGCTTGCCCTTTACCTCCT
CCTTCTCACCCCCACGCACGGCTCGAGTGAATGAGAGGTGAGTAAGGGAG
GGAGGCAGGGGAGGCGGGACGGGGGGAGGGCGATGTGTCGTGTTCTTCCC
AGCCCTTTCTCCCTCCCTCCCTCCATCCTTGACTATTCTATTTGATAGTT
TGTTCATATCTATACTTAATTTTTGTCTTGGTTTTTTATATTGTTTTAAT
TATTTTATGTCTTTTCAGATTCCATATCGGGTGGCGAAGGAAGAAAAGTG
CCTGGACACTACCACATGTCTCTTGGAACAGCAGAATCTCGCCCCTCCCT
CCTTCCCTCCCTCGATCCCGCCCTCCCTCCCTTCCTTGAAAA

protein sequence of NO27G00280.2

>NO27G00280.2-protein ID=NO27G00280.2-protein|Name=NO27G00280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MEKEKEDDEVEEICLPPRTDDERPSRSGRQQQQQQQPCSHRSKSRSRSSS
KSRNRGRGSRIRRPRSEGDRADEDEEKRIEEEEDRRMGARIASLARGQGT
GGMRLRESLSFILRDRASEAITGAGNGGGRGRGREGGMHHSSSAASLSGE
EADTLSFCWMPAIEEFVAREGERRRRRSSGRRKERRSNQVEEEGKEGKEE
EKEEEEEGEEGELPRKSYHATLLSDRTYHNPHALEGMAAVYGLLPARRQH
RSLLLPPPPPPPRENAPFYCEEIRALQNKRYADGKVAAGVERNRQGLYLE
AIQLYEQALSSCPDHVDALVARGAARANLGSLRKAVDDFEEALKVDPEAE
NARSYLKTIQEKLSISATSSSLPPSTSSPSSSSFRGRAMVRRTSTTGGGG
GGRGGGGGGGGEGRDVALSSVFRRLPFTSSFSPPRTARVNER*

mRNA from alignment at chr27:99574..103433-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00280.2 ID=NO27G00280.2|Name=NO27G00280.2|organism=Nannochloropsis oceanica|type=mRNA|length=3860bp|location=Sequence derived from alignment at chr27:99574..103433- (Nannochloropsis oceanica)
CTTGGCTACACCGGCGGGGAAGTGGCCGGGAGATGAAGGGCCACCGTGAG
AGGCCAATATAGTGATGCTGAGGCACATTCCTCGTCCCTCACATGAGACA
CAAGCCGACGAATGGAAGGGTCGGCAAAGCAGTAATCATCCACCTTTCCT
ACCCTTCCTGCCCTCCAACCCTGCCTACCGTATGACGTGACTACCACCAA
GCCATGCACCGTCTCTCCCGCCAAATACGTGGCGCGTGACAGGCGGCAAT
GCACGGCCAGACGCCGTTTCTTCGGGTTGTGGAGGCTGGAATGCTGCTGT
TGTTGCTGCTGCTGCTGGGAGACGCCGCCGCTGCCCATGGACGAAGGAGG
GAGGAAAAGTCACAAAGGGGGGTCAGGCAAAGGGGAGACAGCTGGCTGGT
GGGCGCCCAGTGTTGATAACTGTAAAGCACGGATGTTTGTATTAGCTCTT
GTTTGGAGGTGGACTGGCGTAAAGGAGGAGAGTTAGGGAGGAGGCGACTG
AACCAACGTTGCGCTCCCTTTGGCGAGTCCAGCATCGTTCAGAGGTTACA
CACCCCCTCACCACGTACCAACCCCTTCACCTTACGCACAACACCACAGC
AAAGAAGGGCCGCATGAGTAGCAGCTCGCGGGCAACAAGCGAGTGGAGGA
GGAGGCACGAGACCAAACTATAAAGGAGGGAGGGAGGGAGTTGCAGCAGT
ACAGTCAAGCCTCCATACGCCACACCATCGTTCCCCTCGCATCCTTTCGT
CAGCCATTCAATAAATATCTGCGGCCACAGAGACACCAGCACCCGCACCA
GCACCAGCACGGATGGAGAAGGAGAAGGAGGACGACGAGGTGGAAGAAAT
ATGCCTGCCGCCTCGGACAGACGATGAGAGGCCTTCTCGATCTGGGCGGC
AGCAACAGCAGCAGCAGCAGCCTTGTTCCCACAGGAGCAAGAGCAGGAGC
AGGAGCAGCAGCAAAAGCCGAAATAGGGGTAGAGGTAGCAGGATACGGAG
GCCAAGGAGTGAAGGAGATAGGGCTGACGAGGACGAAGAAAAGAGGATAG
AGGAGGAGGAGGACCGAAGGATGGGAGCACGGATCGCTAGCCTTGCGCGG
GGGCAGGGAACAGGAGGGATGCGGCTGCGTGAGGTTTGTAATAGCTCTAT
CTCCCCCTCTCTTCATTCCCGCCCTTCTACCCTCCTGTCCTCTTTCCTTT
TCCTTCCTACCCAGCCAATCGACTCCTTTCTCTCCCTCCCTCTCTCTCTT
TCCTCCCTCTCCTCTAAATCACACAGAGCCTCTCTTTCATTCTTCGTGAC
CGGGCCTCTGAAGCCATCACAGGAGCAGGGAATGGTGGGGGAAGAGGGAG
GGGGCGGGAAGGGGGAATGCACCACTCGTCAAGTGCGGCGTCGCTCTCGG
GAGAGGAAGCTGACACGTTGTCCTTCTGTTGGATGCCTGCCATTGAGGAG
TTCGTGGCGAGGGAGGGAGAGAGGAGGAGGAGGAGGAGCAGCGGGAGGAG
GAAGGAGAGGAGAAGCAACCAGGTGGAGGAGGAGGGGAAGGAGGGGAAGG
AGGAGGAGAAGGAGGAGGAGGAGGAAGGAGAGGAGGGAGAGCTGCCACGA
AAGGTAAGGTTGAGCTGAACGCTTTGTTTACCTGCGTTTGGCCTCTAATC
CCTCCCTCCCTCCCTCCCTCCCTGATCTCCCTTCAGTCATACCATGCCAC
GTTGCTCTCAGACAGGACGTACCACAATCCTCACGCGCTAGAGGGAATGG
CAGCCGTCTACGGCTTGTTGCCTGCGCGGAGACAGCATCGGTGAGGGAGG
GAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGT
GACAGAGAGCATCGGTAAGGGTTGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGCCTGCATGAAGACTGCATACTTGAATTGTTATTCTTCTTTCT
TCCCCCCCCTCCCTCTCTCCTTTCCCTTTTCCCCCGAAACATGTTACCCG
ATGATCGCTTATTTCCCTCTATCCCTCCCTCCCTCCCTCGCTCCCTCGCT
CCCTCCCTCCCTACCTCCCTCTAGCTCCCTCCTCCTCCCTCCTCCTCCTC
CTCCACCTCGAGAAAACGCTCCCTTTTACTGCGAGGAGATCCGAGCTCTT
CAAAACAAGTAGGAAACGAGGGAGGGAAGGAGGGAGGGAGGGAGCGAGGG
AGGGGAAAAGAGAGGAAACCCCATCACTTGAGTGATTCTTGCAGGGGAGA
TCTCGCGCCCCTTAATTTATTTACCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCTTATCAGGCGATATGCG
GATGGGAAAGTGGCTGCGGGAGTGGAGAGAAATCGACAAGGCTTGTACCT
CGAGGCCATCCAGTAGGTGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAG
GGAGGGAGGGAGGAAGGGAGGAGGGAGGAAGGGAGGGAGGGAGGAGAGGA
TTACTAACCACATGTACAATGTGAAGGAAAAGGGGAAGACGCGCTAGTGG
GAAAAAGGGAGAGAGGCGACAGCCATTTAATTATTGTAACTCATATAAAC
CTACATATTTACATCTCTATAAACCTGAATAATCTTATTATTTTAATCCC
TTTTTTCGGTTCCTGCCGAAGGTTGTACGAGCAAGCGTTATCCTCCTGCC
CCGACCACGTCGACGCTCTGGTGGCACGGTGCGCACTCCCACCCTCCCTC
CCTCCCTCCCTCCTTCCCTCCCTCCATTTCCTTTCTCCGAATACGCCCCC
CCCCTTCTGTTTGTGCTCTCCCTTCCTCCTTCCTTCCCTTTCTCCTTCTT
CTCCTCCCTCCTTCCCTCCCTTCCTCCTTCATTTTCCCCCTTGCCCCCAT
TCCCTCCAAGCCACTGCTTGTCATGAGGATCATTCACCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGAGGT
GCGGCTCGCGCCAATTTGGGTTCCCTTAGGAAGGCCGTCGATGACTTCGA
GGAGGCGCTCAAGGTGAGGGAGAGAAGGAAGGAAGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGAAGGAAGGCAAGGTGAATCATCGCCCTCTCGTTCTC
ATCTTGATGTGCTTCACTCCCTTCCCTCCCTTCCCTCCCTTCCCCTCTCC
TTCCCGCCCTAGGTCGATCCTGAGGCAGAAAATGCGCGAAGCTACCTCAA
GACAATCCAAGAGAAGCTTTCCATCTCTGCCACCTCTTCATCTCTCCCAC
CCTCCACTTCCTCTCCCTCCTCCTCCTCTTTTCGCGGTAGAGCGATGGTC
AGACGAACATCAACAACAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAGG
AGGAGGAGGAGGAGAAGGGAGGGACGTCGCTCTCTCTTCGGTCTTCCGTC
GCTTGCCCTTTACCTCCTCCTTCTCACCCCCACGCACGGCTCGAGTGAAT
GAGAGGTGAGTAAGGGAGGGAGGCAGGGGAGGCGGGACGGGGGGAGGGCG
ATGTGTCGTGTTCTTCCCAGCCCTTTCTCCCTCCCTCCCTCCATCCTTGA
CTATTCTATTTGATAGTTTGTTCATATCTATACTTAATTTTTGTCTTGGT
TTTTTATATTGTTTTAATTATTTTATGTCTTTTCAGATTCCATATCGGGT
GGCGAAGGAAGAAAAGTGCCTGGACACTACCACATGTCTCTTGGAACAGC
AGAATCTCGCCCCTCCCTCCTTCCCTCCCTCGATCCCGCCCTCCCTCCCT
TCCTTGAAAA

Coding sequence (CDS) from alignment at chr27:99574..103433-

>NO27G00280.2 ID=NO27G00280.2|Name=NO27G00280.2|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr27:99574..103433- (Nannochloropsis oceanica)
ATGGAGAAGGAGAAGGAGGACGACGAGGTGGAAGAAATATGCCTGCCGCC
TCGGACAGACGATGAGAGGCCTTCTCGATCTGGGCGGCAGCAACAGCAGC
AGCAGCAGCCTTGTTCCCACAGGAGCAAGAGCAGGAGCAGGAGCAGCAGC
AAAAGCCGAAATAGGGGTAGAGGTAGCAGGATACGGAGGCCAAGGAGTGA
AGGAGATAGGGCTGACGAGGACGAAGAAAAGAGGATAGAGGAGGAGGAGG
ACCGAAGGATGGGAGCACGGATCGCTAGCCTTGCGCGGGGGCAGGGAACA
GGAGGGATGCGGCTGCGTGAGAGCCTCTCTTTCATTCTTCGTGACCGGGC
CTCTGAAGCCATCACAGGAGCAGGGAATGGTGGGGGAAGAGGGAGGGGGC
GGGAAGGGGGAATGCACCACTCGTCAAGTGCGGCGTCGCTCTCGGGAGAG
GAAGCTGACACGTTGTCCTTCTGTTGGATGCCTGCCATTGAGGAGTTCGT
GGCGAGGGAGGGAGAGAGGAGGAGGAGGAGGAGCAGCGGGAGGAGGAAGG
AGAGGAGAAGCAACCAGGTGGAGGAGGAGGGGAAGGAGGGGAAGGAGGAG
GAGAAGGAGGAGGAGGAGGAAGGAGAGGAGGGAGAGCTGCCACGAAAGTC
ATACCATGCCACGTTGCTCTCAGACAGGACGTACCACAATCCTCACGCGC
TAGAGGGAATGGCAGCCGTCTACGGCTTGTTGCCTGCGCGGAGACAGCAT
CGCTCCCTCCTCCTCCCTCCTCCTCCTCCTCCACCTCGAGAAAACGCTCC
CTTTTACTGCGAGGAGATCCGAGCTCTTCAAAACAAGCGATATGCGGATG
GGAAAGTGGCTGCGGGAGTGGAGAGAAATCGACAAGGCTTGTACCTCGAG
GCCATCCAGTTGTACGAGCAAGCGTTATCCTCCTGCCCCGACCACGTCGA
CGCTCTGGTGGCACGAGGTGCGGCTCGCGCCAATTTGGGTTCCCTTAGGA
AGGCCGTCGATGACTTCGAGGAGGCGCTCAAGGTCGATCCTGAGGCAGAA
AATGCGCGAAGCTACCTCAAGACAATCCAAGAGAAGCTTTCCATCTCTGC
CACCTCTTCATCTCTCCCACCCTCCACTTCCTCTCCCTCCTCCTCCTCTT
TTCGCGGTAGAGCGATGGTCAGACGAACATCAACAACAGGAGGAGGAGGA
GGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGAGGGACGTCGC
TCTCTCTTCGGTCTTCCGTCGCTTGCCCTTTACCTCCTCCTTCTCACCCC
CACGCACGGCTCGAGTGAATGAGAGGTGA

Synonyms

Publications