NO27G00260, NO27G00260 (gene) Nannochloropsis oceanica

Overview
NameNO27G00260
Unique NameNO27G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1424
Alignment locationchr27:90745..92168 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:90745..92168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G00260 vs. NCBI_GenBank
Match: EWM20085.1 (hypothetical protein Naga_101875g1 [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 9.900e-20
Identity = 86/225 (38.22%), Postives = 107/225 (47.56%), Query Frame = 0 
Query:   14 LALLLLP--------SPGLCFLLHRPSQSSPQTL---APSPRYAPASSVQASSPFSSSSSSLFSWSSTAAPDFLAFVDAVTCGPGGGCWEG-------TVCRLSMKEEEXXXXXXXXKDES----LDVQVCFEEVMRACGGAIAGVREKILFSSSSSSCSGQISS---------------------------FYGMHEHNRGEDGFLFLPDGGFQHGPDRLKVGG 190
            L LLL+P        +PG  F+     + S  TL   APSP          SSP S+S  S F+W++T APDF AFVD+VTCG   G WEG            S  +EE          E+      V   FEE+MRACGGAIAGVRE+ + + SS + S    S                            YG+ EHNRG++GF+FL DG FQHGP +L  GG
Sbjct:   48 LMLLLIPTLSKAFLFAPGPAFVTTYFDKKSKNTLHVTAPSP----------SSPSSTSPPSNFTWTATVAPDFFAFVDSVTCGRSNGQWEGLHYSHNSPSLETSQGQEEENPETDERHCEARYHVRGVTTSFEEIMRACGGAIAGVREQKMMTPSSFTLSSPTPSEXXXXXXXXXXXXXXXXXXXXXXXXXXSYGLCEHNRGDEGFVFLRDGSFQHGPAQLARGG 262
The following BLAST results are available for this feature:
BLAST of NO27G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20085.19.900e-2038.22hypothetical protein Naga_101875g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00260.1NO27G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|310264gene_10130Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00260.1NO27G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00260 ID=NO27G00260|Name=NO27G00260|organism=Nannochloropsis oceanica|type=gene|length=1424bp
CATCCCTTGCCGAGTCTTAGCGCATCCTTTCCTTCCGCATCCGTTGCAGA
CATTGTACACGGTGTATTTCGCCCTTTCTTTCAATCAGACGACAAATGCA
TATTGAAATCGTCCTTAACTTCACGTGACATCACTTGTTTCTGTCGAGTC
TCCCTCGAGGAAGACTATTGACTGACCTCATCCCCTTGTTACTCCTTCCT
ACACACAAAATAGGGGGCCTGTGACCTACATCTAGGAGAATGCAACATCA
TCTTGTCCTCCCGCATTTTCTGTCCATCCTTGCCCTCCTTTTATTACCGT
CTCCAGGCCTCTGTTTCCTCCTCCACCGGCCTTCCCAATCGTCCCCACAA
ACATTAGCACCATCACCACGCTACGCGCCTGCATCTTCAGTCCAGGCGTC
CTCTCCCTTTTCCTCTTCGTCTTCCTCCCTTTTTTCCTGGTCTTCTACCG
CGGCACCGGATTTTTTGGCGTTTGTCGATGCGGTCACCTGTGGCCCTGGC
GGTGGCTGTTGGGAAGGCACAGTCTGTCGCCTTTCCATGAAGGAGGAGGA
GGAGGAAGGGAGGGAGGAACGAAGAAAAGACGAGTCGTTGGATGTTCAAG
TTTGCTTTGAGGAAGTCATGCGGGCGTGCGGAGGGGCCATTGCAGGAGTA
AGAGAAAAAATACTCTTTTCCTCCTCCTCTTCTTCCTGCTCAGGACAGAT
CTCGTCCTTTTATGGCATGCATGAGCATAACAGAGGAGAAGACGGCTTCC
TCTTCCTTCCCGACGGTGGTTTCCAGCATGGGCCGGATCGCCTGAAGGTA
GGAGGGGGACAAGGAGGAAAGGAAAGAAAGGAGGAGGAGGAGGAAATGGA
AGTTGTGACGAGCTTGGCATCGGAGGATGGGAAGGAAAGGTTGCGGGTGA
GGGTGAGGTTGGGGAGGAGGGAGGAAAGGGAGAAGCTTCGCGTCACGGAC
GTCAGCTGGTCCCGAGAGCGCTCCAAAGGCAAAGATAGTAGCAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTTCCTCCTTCGCGTCCGTAT
TCTCCCCCTCCTTCTTTCCCTCCCTCCTGAAGGAAGGGAAGGTGTTGAGA
GCGACAAGAGGAAATGGGCCGCCTCCCCCACAGTGGCAGAGGGCACGGCT
GAAGTGGGAGGAGAGTGGGGGGGAGGGATGGATGGAGGAAGGGAAGGAGA
GAGGAGGAGAAGGTCGATTGGCGAGCGAGGAAGGGGTGTGGGTGTTGGTG
GAAGAGGAGGGAGAGAGGGAAGGAGCGGTAAGGATCGAGGTTGGAGGGGT
GGTGGGGAAGAAGCTGGAGATATGGAGAAGGGTGTATGATGAGGGAAGGA
GGGAGGGAGGGAGGGAGGGAGGGGCATTGCGGGAAGTAAGCATCTTCCGC
TCTGATTTCCTGAGAAAGGAGTGA
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protein sequence of NO27G00260.1

>NO27G00260.1-protein ID=NO27G00260.1-protein|Name=NO27G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MQHHLVLPHFLSILALLLLPSPGLCFLLHRPSQSSPQTLAPSPRYAPASS
VQASSPFSSSSSSLFSWSSTAAPDFLAFVDAVTCGPGGGCWEGTVCRLSM
KEEEEEGREERRKDESLDVQVCFEEVMRACGGAIAGVREKILFSSSSSSC
SGQISSFYGMHEHNRGEDGFLFLPDGGFQHGPDRLKVGGGQGGKERKEEE
EEMEVVTSLASEDGKERLRVRVRLGRREEREKLRVTDVSWSRERSKGKDS
SSSSSSSSSSSSSPSSFASVFSPSFFPSLLKEGKVLRATRGNGPPPPQWQ
RARLKWEESGGEGWMEEGKERGGEGRLASEEGVWVLVEEEGEREGAVRIE
VGGVVGKKLEIWRRVYDEGRREGGREGGALREVSIFRSDFLRKE*
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Synonyms
Publications