NO27G00260.1, NO27G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00260.1
Unique NameNO27G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1424
Alignment locationchr27:90745..92168 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:90745..92168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00260.1 vs.
Match: EWM20085.1 (hypothetical protein Naga_101875g1 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 2.400e-29
Identity = 109/261 (41.76%), Postives = 137/261 (52.49%), Query Frame = 0 
Query:   14 LALLLLPS--------PGLCFLLHRPSQSSPQTL---APSPRYAPASSVQASSPFSSSSSSLFSWSSTAAPDFLAFVDAVTCGPGGGCWEG-------TVCRLSMKEEEEEGREERRKDES----LDVQVCFEEVMRACGGAIAGVREKILFSSSSSSCSGQ---------------------------ISSFYGMHEHNRGEDGFLFLPDGGFQHGPDRLKVGGGQGGKE-RKEEEEEMEVVTSLASEDGKERLRVRVRL 225
            L LLL+P+        PG  F+     + S  TL   APSP          SSP S+S  S F+W++T APDF AFVD+VTCG   G WEG            S  +EEE    + R  E+      V   FEE+MRACGGAIAGVRE+ + + SS + S                               S YG+ EHNRG++GF+FL DG FQHGP +L  GG +GG+E  +E   E E+VTS+ SE G+ERLRVRVRL
Sbjct:   48 LMLLLIPTLSKAFLFAPGPAFVTTYFDKKSKNTLHVTAPSP----------SSPSSTSPPSNFTWTATVAPDFFAFVDSVTCGRSNGQWEGLHYSHNSPSLETSQGQEEENPETDERHCEARYHVRGVTTSFEEIMRACGGAIAGVREQKMMTPSSFTLSSPTPSEPEEERVVEGKEGTVTAVTAVTDVTDSSYGLCEHNRGDEGFVFLRDGSFQHGPAQLARGGREGGREGGREGGREEELVTSIVSEGGEERLRVRVRL 298
The following BLAST results are available for this feature:
BLAST of NO27G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20085.12.400e-2941.76hypothetical protein Naga_101875g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00260NO27G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00260.1NO27G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00260.1.cds1NO27G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00260.1 ID=NO27G00260.1|Name=NO27G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp
CATCCCTTGCCGAGTCTTAGCGCATCCTTTCCTTCCGCATCCGTTGCAGA
CATTGTACACGGTGTATTTCGCCCTTTCTTTCAATCAGACGACAAATGCA
TATTGAAATCGTCCTTAACTTCACGTGACATCACTTGTTTCTGTCGAGTC
TCCCTCGAGGAAGACTATTGACTGACCTCATCCCCTTGTTACTCCTTCCT
ACACACAAAATAGGGGGCCTGTGACCTACATCTAGGAGAATGCAACATCA
TCTTGTCCTCCCGCATTTTCTGTCCATCCTTGCCCTCCTTTTATTACCGT
CTCCAGGCCTCTGTTTCCTCCTCCACCGGCCTTCCCAATCGTCCCCACAA
ACATTAGCACCATCACCACGCTACGCGCCTGCATCTTCAGTCCAGGCGTC
CTCTCCCTTTTCCTCTTCGTCTTCCTCCCTTTTTTCCTGGTCTTCTACCG
CGGCACCGGATTTTTTGGCGTTTGTCGATGCGGTCACCTGTGGCCCTGGC
GGTGGCTGTTGGGAAGGCACAGTCTGTCGCCTTTCCATGAAGGAGGAGGA
GGAGGAAGGGAGGGAGGAACGAAGAAAAGACGAGTCGTTGGATGTTCAAG
TTTGCTTTGAGGAAGTCATGCGGGCGTGCGGAGGGGCCATTGCAGGAGTA
AGAGAAAAAATACTCTTTTCCTCCTCCTCTTCTTCCTGCTCAGGACAGAT
CTCGTCCTTTTATGGCATGCATGAGCATAACAGAGGAGAAGACGGCTTCC
TCTTCCTTCCCGACGGTGGTTTCCAGCATGGGCCGGATCGCCTGAAGGTA
GGAGGGGGACAAGGAGGAAAGGAAAGAAAGGAGGAGGAGGAGGAAATGGA
AGTTGTGACGAGCTTGGCATCGGAGGATGGGAAGGAAAGGTTGCGGGTGA
GGGTGAGGTTGGGGAGGAGGGAGGAAAGGGAGAAGCTTCGCGTCACGGAC
GTCAGCTGGTCCCGAGAGCGCTCCAAAGGCAAAGATAGTAGCAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTTCCTCCTTCGCGTCCGTAT
TCTCCCCCTCCTTCTTTCCCTCCCTCCTGAAGGAAGGGAAGGTGTTGAGA
GCGACAAGAGGAAATGGGCCGCCTCCCCCACAGTGGCAGAGGGCACGGCT
GAAGTGGGAGGAGAGTGGGGGGGAGGGATGGATGGAGGAAGGGAAGGAGA
GAGGAGGAGAAGGTCGATTGGCGAGCGAGGAAGGGGTGTGGGTGTTGGTG
GAAGAGGAGGGAGAGAGGGAAGGAGCGGTAAGGATCGAGGTTGGAGGGGT
GGTGGGGAAGAAGCTGGAGATATGGAGAAGGGTGTATGATGAGGGAAGGA
GGGAGGGAGGGAGGGAGGGAGGGGCATTGCGGGAAGTAAGCATCTTCCGC
TCTGATTTCCTGAGAAAGGAGTGA
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protein sequence of NO27G00260.1

>NO27G00260.1-protein ID=NO27G00260.1-protein|Name=NO27G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MQHHLVLPHFLSILALLLLPSPGLCFLLHRPSQSSPQTLAPSPRYAPASS
VQASSPFSSSSSSLFSWSSTAAPDFLAFVDAVTCGPGGGCWEGTVCRLSM
KEEEEEGREERRKDESLDVQVCFEEVMRACGGAIAGVREKILFSSSSSSC
SGQISSFYGMHEHNRGEDGFLFLPDGGFQHGPDRLKVGGGQGGKERKEEE
EEMEVVTSLASEDGKERLRVRVRLGRREEREKLRVTDVSWSRERSKGKDS
SSSSSSSSSSSSSPSSFASVFSPSFFPSLLKEGKVLRATRGNGPPPPQWQ
RARLKWEESGGEGWMEEGKERGGEGRLASEEGVWVLVEEEGEREGAVRIE
VGGVVGKKLEIWRRVYDEGRREGGREGGALREVSIFRSDFLRKE*
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mRNA from alignment at chr27:90745..92168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00260.1 ID=NO27G00260.1|Name=NO27G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at chr27:90745..92168+ (Nannochloropsis oceanica)
CATCCCTTGCCGAGTCTTAGCGCATCCTTTCCTTCCGCATCCGTTGCAGA
CATTGTACACGGTGTATTTCGCCCTTTCTTTCAATCAGACGACAAATGCA
TATTGAAATCGTCCTTAACTTCACGTGACATCACTTGTTTCTGTCGAGTC
TCCCTCGAGGAAGACTATTGACTGACCTCATCCCCTTGTTACTCCTTCCT
ACACACAAAATAGGGGGCCTGTGACCTACATCTAGGAGAATGCAACATCA
TCTTGTCCTCCCGCATTTTCTGTCCATCCTTGCCCTCCTTTTATTACCGT
CTCCAGGCCTCTGTTTCCTCCTCCACCGGCCTTCCCAATCGTCCCCACAA
ACATTAGCACCATCACCACGCTACGCGCCTGCATCTTCAGTCCAGGCGTC
CTCTCCCTTTTCCTCTTCGTCTTCCTCCCTTTTTTCCTGGTCTTCTACCG
CGGCACCGGATTTTTTGGCGTTTGTCGATGCGGTCACCTGTGGCCCTGGC
GGTGGCTGTTGGGAAGGCACAGTCTGTCGCCTTTCCATGAAGGAGGAGGA
GGAGGAAGGGAGGGAGGAACGAAGAAAAGACGAGTCGTTGGATGTTCAAG
TTTGCTTTGAGGAAGTCATGCGGGCGTGCGGAGGGGCCATTGCAGGAGTA
AGAGAAAAAATACTCTTTTCCTCCTCCTCTTCTTCCTGCTCAGGACAGAT
CTCGTCCTTTTATGGCATGCATGAGCATAACAGAGGAGAAGACGGCTTCC
TCTTCCTTCCCGACGGTGGTTTCCAGCATGGGCCGGATCGCCTGAAGGTA
GGAGGGGGACAAGGAGGAAAGGAAAGAAAGGAGGAGGAGGAGGAAATGGA
AGTTGTGACGAGCTTGGCATCGGAGGATGGGAAGGAAAGGTTGCGGGTGA
GGGTGAGGTTGGGGAGGAGGGAGGAAAGGGAGAAGCTTCGCGTCACGGAC
GTCAGCTGGTCCCGAGAGCGCTCCAAAGGCAAAGATAGTAGCAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTTCCTCCTTCGCGTCCGTAT
TCTCCCCCTCCTTCTTTCCCTCCCTCCTGAAGGAAGGGAAGGTGTTGAGA
GCGACAAGAGGAAATGGGCCGCCTCCCCCACAGTGGCAGAGGGCACGGCT
GAAGTGGGAGGAGAGTGGGGGGGAGGGATGGATGGAGGAAGGGAAGGAGA
GAGGAGGAGAAGGTCGATTGGCGAGCGAGGAAGGGGTGTGGGTGTTGGTG
GAAGAGGAGGGAGAGAGGGAAGGAGCGGTAAGGATCGAGGTTGGAGGGGT
GGTGGGGAAGAAGCTGGAGATATGGAGAAGGGTGTATGATGAGGGAAGGA
GGGAGGGAGGGAGGGAGGGAGGGGCATTGCGGGAAGTAAGCATCTTCCGC
TCTGATTTCCTGAGAAAGGAGTGA
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Coding sequence (CDS) from alignment at chr27:90745..92168+

>NO27G00260.1 ID=NO27G00260.1|Name=NO27G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr27:90745..92168+ (Nannochloropsis oceanica)
ATGCAACATCATCTTGTCCTCCCGCATTTTCTGTCCATCCTTGCCCTCCT
TTTATTACCGTCTCCAGGCCTCTGTTTCCTCCTCCACCGGCCTTCCCAAT
CGTCCCCACAAACATTAGCACCATCACCACGCTACGCGCCTGCATCTTCA
GTCCAGGCGTCCTCTCCCTTTTCCTCTTCGTCTTCCTCCCTTTTTTCCTG
GTCTTCTACCGCGGCACCGGATTTTTTGGCGTTTGTCGATGCGGTCACCT
GTGGCCCTGGCGGTGGCTGTTGGGAAGGCACAGTCTGTCGCCTTTCCATG
AAGGAGGAGGAGGAGGAAGGGAGGGAGGAACGAAGAAAAGACGAGTCGTT
GGATGTTCAAGTTTGCTTTGAGGAAGTCATGCGGGCGTGCGGAGGGGCCA
TTGCAGGAGTAAGAGAAAAAATACTCTTTTCCTCCTCCTCTTCTTCCTGC
TCAGGACAGATCTCGTCCTTTTATGGCATGCATGAGCATAACAGAGGAGA
AGACGGCTTCCTCTTCCTTCCCGACGGTGGTTTCCAGCATGGGCCGGATC
GCCTGAAGGTAGGAGGGGGACAAGGAGGAAAGGAAAGAAAGGAGGAGGAG
GAGGAAATGGAAGTTGTGACGAGCTTGGCATCGGAGGATGGGAAGGAAAG
GTTGCGGGTGAGGGTGAGGTTGGGGAGGAGGGAGGAAAGGGAGAAGCTTC
GCGTCACGGACGTCAGCTGGTCCCGAGAGCGCTCCAAAGGCAAAGATAGT
AGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTTCCTCCTT
CGCGTCCGTATTCTCCCCCTCCTTCTTTCCCTCCCTCCTGAAGGAAGGGA
AGGTGTTGAGAGCGACAAGAGGAAATGGGCCGCCTCCCCCACAGTGGCAG
AGGGCACGGCTGAAGTGGGAGGAGAGTGGGGGGGAGGGATGGATGGAGGA
AGGGAAGGAGAGAGGAGGAGAAGGTCGATTGGCGAGCGAGGAAGGGGTGT
GGGTGTTGGTGGAAGAGGAGGGAGAGAGGGAAGGAGCGGTAAGGATCGAG
GTTGGAGGGGTGGTGGGGAAGAAGCTGGAGATATGGAGAAGGGTGTATGA
TGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGGCATTGCGGGAAGTAA
GCATCTTCCGCTCTGATTTCCTGAGAAAGGAGTGA
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Synonyms
Publications