NO27G00250, NO27G00250 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00250 vs. NCBI_GenBank
Match: EWM21072.1 (Uncharacterized domain UPF0079, ATPase bacteria [Nannochloropsis gaditana]) HSP 1 Score: 242.7 bits (618), Expect = 1.700e-60 Identity = 123/170 (72.35%), Postives = 136/170 (80.00%), Query Frame = 0
Query: 178 SSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGE--EGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLSALDENTRTVVIRGVGGGWADEVVRRLEDVMNE 346
S E MER+GEGLWEAGLA GHTV LYGDLGTGKTTLARG IQAATA E GEGG+E V VTSPSYLLDN YQA D ETGD F +HHMDLYRLS E HDLKILG P VL E LCLIEWP+RLG +TP+TR+EI L A +E TRT+ ++ VGGGWA EVV RL +V+NE
Sbjct: 167 SPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKE--VMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE 334
BLAST of NO27G00250 vs. NCBI_GenBank
Match: CBJ30687.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24 Identity = 71/158 (44.94%), Postives = 95/158 (60.13%), Query Frame = 0
Query: 178 SSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLSALDENTRTVVIRGVGGGWADEV 336
S E ME G + A + G VLL+GDLGTGKT ARG ++A G+ G +AVTSPSYLLDN+Y+ D + +HHMDLYRL DL++LG P V E +CL+EWP+RLG+ P RL+++L+A++E R + G G W V
Sbjct: 87 SPEEMEETG-AFFGADASGGDVVLLWGDLGTGKTCFARGFVRA--RVGDPG-------LAVTSPSYLLDNTYEVADED----LTLHHMDLYRL-QGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVV 229
BLAST of NO27G00250 vs. NCBI_GenBank
Match: WP_071468375.1 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Roseinatronobacter thiooxidans]) HSP 1 Score: 94.4 bits (233), Expect = 7.600e-16 Identity = 65/151 (43.05%), Postives = 82/151 (54.30%), Query Frame = 0
Query: 192 AGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLS-ALDENTRTVVIRGVGGGWADEVVRRLED 342
AGL AG VLL G +G GK+ AR LIQA A E GR V SPS+ L +Y D I H DLYRL+ + HD LG E+A+CL+EWPERLG++ P + L + L A DE+TR++ W D V+R L D
Sbjct: 26 AGLGAGDVVLLSGPVGAGKSLFARALIQARLA-----ELGR--YEDVPSPSFTLVQTYDL------DRVEIWHADLYRLA-DPHDALELGLDQAFEDAICLVEWPERLGAFCPASGLHVTLEPAADEDTRSLRFSATDPRWGD-VLRMLAD 161
BLAST of NO27G00250 vs. NCBI_GenBank
Match: XP_002290654.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92406.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 92.0 bits (227), Expect = 3.800e-15 Identity = 59/136 (43.38%), Postives = 75/136 (55.15%), Query Frame = 0
Query: 178 SSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLS 314
++E ME +G GL G G +LL GDLG GKT +RG I+ T +E VTSP+YLL NSY G+T ++HMDLYRLS +DL L V + LIEWP RL + P TRL+I L+
Sbjct: 252 TAEDMEDIG-GLLSVGSKKGDIILLDGDLGAGKTCFSRGFIRGRTGMEDE---------RVTSPTYLLSNSYSVDGGKT----KVYHMDLYRLSGSANDLLPLDLENVFTNGISLIEWPSRL-NVKPETRLDITLT 372
BLAST of NO27G00250 vs. NCBI_GenBank
Match: OWZ05378.1 (YjeE family ATPase [Phytophthora megakarya]) HSP 1 Score: 92.0 bits (227), Expect = 3.800e-15 Identity = 63/155 (40.65%), Postives = 85/155 (54.84%), Query Frame = 0
Query: 182 MERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRL-SMEKHDLKILGFPLVLEEALCLIEWPERLG-SYTPTTRLEINLSALDEN---TRTVVIRGVGGGW 332
ME+LGE L + G G + LYGDLG GKT LARG I+A T + ++AVTSP+YLL N+Y + ++H+DLYRL ++ K D LG + + L+EWPER PT RL++ +S DEN TR V +G W
Sbjct: 1 MEKLGEKLAQ-GRKPGDVLFLYGDLGCGKTCLARGFIRAYTG---------QKSLAVTSPTYLLVNTYDEA------VPTVYHVDLYRLNAVTKQDAMALGLAEAFGKGITLVEWPERFDRESVPTERLDVRIS-YDENDGETRHVEFHPIGEQW 138
BLAST of NO27G00250 vs. NCBI_GenBank
Match: WP_054312602.1 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Mesorhizobium sp. 1M-11]) HSP 1 Score: 91.3 bits (225), Expect = 6.500e-15 Identity = 68/156 (43.59%), Postives = 86/156 (55.13%), Query Frame = 0
Query: 184 RLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLSALDENTRTVVIRGVGGGWADEVVRRL 340
RLGE L A L G + L+GDLG GK+TLAR LI+A +GA+ V SP++ L SY +HH DLYRLS +L+ LGFP VL++ LIEWPER G P T + + L DE R+V I G G G+ + VVR L
Sbjct: 18 RLGEDLAMA-LRPGDVLALHGDLGAGKSTLARALIRAL---------ADDGALDVPSPTFTLVQSYDT-------RVPVHHFDLYRLS-SADELEELGFPDVLKDGAALIEWPERAGR-LPDTTITVELVHQDEG-RSVRILGEGAGY-ERVVRSL 152
BLAST of NO27G00250 vs. NCBI_GenBank
Match: WP_022698320.1 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Euryhalocaulis caribicus]) HSP 1 Score: 90.5 bits (223), Expect = 1.100e-14 Identity = 63/160 (39.38%), Postives = 81/160 (50.62%), Query Frame = 0
Query: 183 ERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLSALDENTRTVVIRGVGGGWADEVVRRLEDV 343
E LG + A LA G V L GDLG GKTTLARG ++A G V V SP++ L +Y+ + F + H DLYR+ E +L LG E+A CL+EWPERLG P RL++ LS + R V+ G W V RLE +
Sbjct: 17 EALGAAI-AACLAPGAAVTLTGDLGAGKTTLARGAVRALL-----------GQVEVPSPTFTLVQTYETPE------FELWHADLYRIEHE-DELDELGLEDAFEDAACLVEWPERLGPRLPERRLDVRLSFAEGGGRRAVLTAHGEFW----VGRLEQI 153
BLAST of NO27G00250 vs. NCBI_GenBank
Match: WP_092858351.1 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Albimonas pacifica] >SFH81226.1 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE [Albimonas pacifica]) HSP 1 Score: 90.5 bits (223), Expect = 1.100e-14 Identity = 64/155 (41.29%), Postives = 80/155 (51.61%), Query Frame = 0
Query: 179 SEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINLS--ALDENTRTVVIRGVGGGW 332
+E +RLG L A LA G V+L GDLG GK+ LAR I A A + E + SPS+ L SY + GE I H DL+RL + LG E+A+CL+EWPERLG P RLEI L+ D R + +R VG GW
Sbjct: 21 AEATDRLGAALGLA-LAPGDAVMLSGDLGAGKSALARAAISAILAQEDRVED-------IPSPSFTLVQSYDSARGE------IWHADLHRLG-GPAAIPELGLEEAFEDAICLVEWPERLGPLAPARRLEIALAFPPGDGEGRLLEVRPVGPGW 160
BLAST of NO27G00250 vs. NCBI_GenBank
Match: ETI29983.1 (YjeE family ATPase [Phytophthora parasitica P1569] >ETK74131.1 YjeE family ATPase [Phytophthora parasitica] >ETL27562.1 YjeE family ATPase [Phytophthora parasitica] >ETL80803.1 YjeE family ATPase [Phytophthora parasitica] >ETM33996.1 YjeE family ATPase [Phytophthora parasitica] >ETO58772.1 YjeE family ATPase [Phytophthora parasitica P1976] >ETP03654.1 YjeE family ATPase [Phytophthora parasitica CJ01A1] >ETP27828.1 YjeE family ATPase [Phytophthora parasitica P10297]) HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14 Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 0
Query: 178 SSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRL-SMEKHDLKILGFPLVLEEALCLIEWPERLGSYT-PTTRLEINLSALDEN--TRTVVIRGVGGGW 332
S ME LGE L G + L+GDLG GKT LARG IQ+ T + +AVTSP+YLL N+Y E ++ ++H+DLYRL ++ + D LG E + L+EWPER + PT RL + +S +E+ R V ++ +G W
Sbjct: 75 SQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYTGQKD---------LAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERW 218
BLAST of NO27G00250 vs. NCBI_GenBank
Match: XP_008897492.1 (YjeE family ATPase [Phytophthora parasitica INRA-310] >ETN18006.1 YjeE family ATPase [Phytophthora parasitica INRA-310]) HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14 Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 0
Query: 178 SSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRL-SMEKHDLKILGFPLVLEEALCLIEWPERLGSYT-PTTRLEINLSALDEN--TRTVVIRGVGGGW 332
S ME LGE L G + L+GDLG GKT LARG IQ+ T + +AVTSP+YLL N+Y E ++ ++H+DLYRL ++ + D LG E + L+EWPER + PT RL + +S +E+ R V ++ +G W
Sbjct: 75 SQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYTGQKD---------LAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERW 218 The following BLAST results are available for this feature:
BLAST of NO27G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00250 ID=NO27G00250|Name=NO27G00250|organism=Nannochloropsis oceanica|type=gene|length=2119bpback to top protein sequence of NO27G00250.1 >NO27G00250.1-protein ID=NO27G00250.1-protein|Name=NO27G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bpback to top protein sequence of NO27G00250.2 >NO27G00250.2-protein ID=NO27G00250.2-protein|Name=NO27G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=291bpback to top Synonyms
Publications
|