NO27G00250.2, NO27G00250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00250.2
Unique NameNO27G00250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1728
Alignment locationchr27:87708..89826 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:87708..89826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00250.2 vs.
Match: EWM21072.1 (Uncharacterized domain UPF0079, ATPase bacteria [Nannochloropsis gaditana])

HSP 1 Score: 176.0 bits (445), Expect = 1.700e-40
Identity = 112/168 (66.67%), Postives = 121/168 (72.02%), Query Frame = 0 
Query:  124 SSSLLSCSLFSSSSSSRMRPFSCSTTRLLSSSSSSPPSSPPPSPSSSLYTSTIISSEGMERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGE--EGEGGREGAVAVTSPSYLLDNSYQACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEG 290
            SSS  S S FSSSSSS  +P S ST       SS+P + P  +PS+  YT +  S E MER+GEGLWEAGLA GHTV LYGDLGTGKTTLARG IQAATA  E   GEGG+E  V VTSPSYLLDN YQA D ETGD F +HHMDLYRLS E HDLKILG P VL EG
Sbjct:  122 SSSSASSSSFSSSSSSS-QPLSPSTP------SSTPSTHPAATPST--YTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKE--VMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEG 278
The following BLAST results are available for this feature:
BLAST of NO27G00250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21072.11.700e-4066.67Uncharacterized domain UPF0079, ATPase bacteria [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00250NO27G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00250.2NO27G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00250.2.cds1NO27G00250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00250.2.cds2NO27G00250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00250.2.cds3NO27G00250.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00250.2.cds4NO27G00250.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00250.2 ID=NO27G00250.2|Name=NO27G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
GAAGGCTGGGCTTTAACTTGGCCCATGCTAGACTTCGTGGAGGAAGGAGC
AAGGGAAAGGGGAGCGACGAGCGAGGTTTGTGACTGTGTGTTTGCGTCTT
ACATTGGCGGGCTATCACATGTCGTCCATCTCGTTCATTTCGCCTTTTCA
CCTTTTCATCTCTTCGTCCCGCATGGAATTAGGTAGGTAGATTGATGTAC
ATACGCGCCAGGCAAGCACTGCGGGCCGATCCGCAGGAGCCGAAGGAGCA
ACGGCGGAGCAAGAGAAGCGTCGAGCCGACACGTTAATTGTGAGCCATGC
CCACGAGGCACGAGACCCTCCAGTCTTCACGACCTTCGACCTCACATAGA
TATACGCTTCATATTACAGTGACAAAGGCGTAGCGGAGCATGCCGCGTAA
ACTACCTGGAAACAACCGTCCTTCTACGTCGCCTTCCGCTCGCCTTCCGC
GTCTCCTCCTTGTCTTGCTTCCTTCTTGCTGCACTAGCCTCCTCTCCTCC
TTCGCCTCTTTATCAACCACAACGACGACTCCAATGATGGCTTCATGTCT
AAGAATACATACCCGCAGGAATGCTGCCATCCCTCTTTTTTTACTCAGCA
GTGGTGGCAGCAGCAGCATTCATACGATCAGCGGTGGCCCCATGAGCATA
AACAGAAATGTGCACACGGTTGGCATTGTCTCCTCTGCTACTTCGACTCT
CCTCTCCTCCTCTGTCACCTCCTCCTGCCTTCTCTCCATCACTTCTACCT
CCCGCACCTCTTCGTCTTTACTATCATGCTCATTATTCTCCTCCTCCTCC
TCATCAAGAATGAGACCCTTCTCCTGCTCTACTACACGCCTGCTCTCCTC
CTCCTCCTCCTCCCCCCCCTCCTCCCCTCCTCCCTCCCCCTCCTCCTCCC
TCTATACCTCCACCATCATTTCGTCCGAAGGAATGGAAAGATTAGGGGAG
GGCTTGTGGGAGGCAGGATTAGCAGCAGGACACACGGTGCTTTTGTACGG
GGACCTAGGCACAGGCAAGACGACTCTCGCCCGTGGGCTCATCCAGGCCG
CTACAGCCGCCGGGGAGGAGGGAGAGGGAGGGAGGGAGGGAGCGGTGGCA
GTCACATCGCCGTCGTACTTGTTGGATAATAGCTACCAGGCTTGTGATGG
GGAGACAGGGGATATATTTATGATCCACCACATGGACCTCTATCGCCTTT
CTATGGAGAAGCACGACCTGAAAATTTTGGGTTTCCCTCTTGTGCTGGAA
GAAGGTAGGTGAGGTTGATAGAGCGGGAGAGAGGGGTGAGAAGGGGGAAA
GGGGAAGTACAGACGACAGCTGTAACCACCTCTAAATCTTTCCGTGCACT
TGATTGCTCAATTGATCGCTGGAGGAAAATTCAAAAAGACGCTCAACCTC
TCCCCTTTTCTCCCTCCTACCATCCTTCCCTTTCCACTCCGCTTCAGCCC
TCTGCCTTATTGAGTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACG
CGGCTGGAAATAAATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGT
TATTCGAGGGGTGGGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCG
AGGACGTTATGAATGAGGAGTGAGGGAAAGGAAAAAGACAAGATGGAGAG
AGGAAGGCCAAGATATATATATGATGACCGCAAATCATTAGTAAATAATA
AAGAAGAAAAGCAAATTAGATTTAGGAA
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protein sequence of NO27G00250.2

>NO27G00250.2-protein ID=NO27G00250.2-protein|Name=NO27G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MPRKLPGNNRPSTSPSARLPRLLLVLLPSCCTSLLSSFASLSTTTTTPMM
ASCLRIHTRRNAAIPLFLLSSGGSSSIHTISGGPMSINRNVHTVGIVSSA
TSTLLSSSVTSSCLLSITSTSRTSSSLLSCSLFSSSSSSRMRPFSCSTTR
LLSSSSSSPPSSPPPSPSSSLYTSTIISSEGMERLGEGLWEAGLAAGHTV
LLYGDLGTGKTTLARGLIQAATAAGEEGEGGREGAVAVTSPSYLLDNSYQ
ACDGETGDIFMIHHMDLYRLSMEKHDLKILGFPLVLEEGR*
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mRNA from alignment at chr27:87708..89826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00250.2 ID=NO27G00250.2|Name=NO27G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp|location=Sequence derived from alignment at chr27:87708..89826+ (Nannochloropsis oceanica)
GAAGGCTGGGCTTTAACTTGGCCCATGCTAGACTTCGTGGAGGAAGGAGC
AAGGGAAAGGGGAGCGACGAGCGAGGTTTGTGACTGTGTGTTTGCGTCTT
ACATTGGCGGGCTATCACATGTCGTCCATCTCGTTCATTTCGCCTTTTCA
CCTTTTCATCTCTTCGTCCCGCATGGAATTAGGTAGGTAGATTGATGTAC
ATACGCGCCAGGCAAGCACTGCGGGCCGATCCGCAGGAGCCGAAGGAGCA
ACGGCGGAGCAAGAGAAGCGTCGAGCCGACACGTTAATTGTGAGCCATGC
CCACGAGGCACGAGACCCTCCAGTCTTCACGACCTTCGACCTCACATAGA
TATACGCTTCATATTACAGTGACAAAGGCGTAGCGGAGCATGCCGCGTAA
ACTACCTGGAAACAACCGTCCTTCTACGTCGCCTTCCGCTCGCCTTCCGC
GTCTCCTCCTTGTCTTGCTTCCTTCTTGCTGCACTAGCCTCCTCTCCTCC
TTCGCCTCTTTATCAACCACAACGACGACTCCAATGATGGCTTCATGTCG
TAAGTTCCTAAATTGTTGCTGAAGAATTTATTTTTTTGGACTTTTCGACG
TTGTGTCCATTCCTCTCAACTCCCTCCATCTCTTCCTCTTCCTGCTCCTC
CTACACACGCAGTAAGAATACATACCCGCAGGAATGCTGCCATCCCTCTT
TTTTTACTCAGCAGTGGTGGCAGCAGCAGCATTCATACGATCAGCGGTGG
CCCCATGAGCATAAACAGAAATGTGCACACGGTTGGCATTGTCTCCTCTG
CTACTTCGACTCTCCTCTCCTCCTCTGTCACCTCCTCCTGCCTTCTCTCC
ATCACTTCTACCTCCCGCACCTCTTCGTCTTTACTATCATGCTCATTATT
CTCCTCCTCCTCCTCATCAAGAATGAGACCCTTCTCCTGCTCTACTACAC
GCCTGCTCTCCTCCTCCTCCTCCTCCCCCCCCTCCTCCCCTCCTCCCTCC
CCCTCCTCCTCCCTCTATACCTCCACCATCATTTCGTCCGAAGGAATGGA
AAGATTAGGGGAGGGCTTGTGGGAGGCAGGATTAGCAGCAGGACACACGG
TGCTTTTGTACGGGTACGTCTCTCCCTTCCTTCCTTCCTCCTCCCTCCTT
CCCTCCCTCTCACAGACCTGGGCACAGGCAAGATATTCTTATCCCTTGAC
CGTCCAGTAATCACCCCCTCCCCTCCCGTCCCTCCCTCCCTTCCAGGGAC
CTAGGCACAGGCAAGACGACTCTCGCCCGTGGGCTCATCCAGGCCGCTAC
AGCCGCCGGGGAGGAGGGAGAGGGAGGGAGGGAGGGAGCGGTGGCAGTCA
CATCGCCGTCGTACTTGTTGGATAATAGCTACCAGGCTTGTGATGGGGAG
ACAGGGGATATATTTATGTGAGTAGGGAAAAGGGATGGCAAAAGGGGGGG
AGGGAAGAGGAAATTGTGTTCGTGGTGGTCGACTCATCAATTTGCTGTCT
GCCTATTTTCGTCTACCTTTTCCCAACTCTTCCTGCCTCCCTTCCCCCCC
TCTCTCCCTCAGGATCCACCACATGGACCTCTATCGCCTTTCTATGGAGA
AGCACGACCTGAAAATTTTGGGTTTCCCTCTTGTGCTGGAAGAAGGTAGG
TGAGGTTGATAGAGCGGGAGAGAGGGGTGAGAAGGGGGAAAGGGGAAGTA
CAGACGACAGCTGTAACCACCTCTAAATCTTTCCGTGCACTTGATTGCTC
AATTGATCGCTGGAGGAAAATTCAAAAAGACGCTCAACCTCTCCCCTTTT
CTCCCTCCTACCATCCTTCCCTTTCCACTCCGCTTCAGCCCTCTGCCTTA
TTGAGTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACGCGGCTGGAA
ATAAATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGTTATTCGAGG
GGTGGGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGGACGTTA
TGAATGAGGAGTGAGGGAAAGGAAAAAGACAAGATGGAGAGAGGAAGGCC
AAGATATATATATGATGACCGCAAATCATTAGTAAATAATAAAGAAGAAA
AGCAAATTAGATTTAGGAA
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Coding sequence (CDS) from alignment at chr27:87708..89826+

>NO27G00250.2 ID=NO27G00250.2|Name=NO27G00250.2|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr27:87708..89826+ (Nannochloropsis oceanica)
ATGCCGCGTAAACTACCTGGAAACAACCGTCCTTCTACGTCGCCTTCCGC
TCGCCTTCCGCGTCTCCTCCTTGTCTTGCTTCCTTCTTGCTGCACTAGCC
TCCTCTCCTCCTTCGCCTCTTTATCAACCACAACGACGACTCCAATGATG
GCTTCATGTCTAAGAATACATACCCGCAGGAATGCTGCCATCCCTCTTTT
TTTACTCAGCAGTGGTGGCAGCAGCAGCATTCATACGATCAGCGGTGGCC
CCATGAGCATAAACAGAAATGTGCACACGGTTGGCATTGTCTCCTCTGCT
ACTTCGACTCTCCTCTCCTCCTCTGTCACCTCCTCCTGCCTTCTCTCCAT
CACTTCTACCTCCCGCACCTCTTCGTCTTTACTATCATGCTCATTATTCT
CCTCCTCCTCCTCATCAAGAATGAGACCCTTCTCCTGCTCTACTACACGC
CTGCTCTCCTCCTCCTCCTCCTCCCCCCCCTCCTCCCCTCCTCCCTCCCC
CTCCTCCTCCCTCTATACCTCCACCATCATTTCGTCCGAAGGAATGGAAA
GATTAGGGGAGGGCTTGTGGGAGGCAGGATTAGCAGCAGGACACACGGTG
CTTTTGTACGGGGACCTAGGCACAGGCAAGACGACTCTCGCCCGTGGGCT
CATCCAGGCCGCTACAGCCGCCGGGGAGGAGGGAGAGGGAGGGAGGGAGG
GAGCGGTGGCAGTCACATCGCCGTCGTACTTGTTGGATAATAGCTACCAG
GCTTGTGATGGGGAGACAGGGGATATATTTATGATCCACCACATGGACCT
CTATCGCCTTTCTATGGAGAAGCACGACCTGAAAATTTTGGGTTTCCCTC
TTGTGCTGGAAGAAGGTAGGTGA
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Synonyms
Publications