NO27G00230, NO27G00230 (gene) Nannochloropsis oceanica

Overview
NameNO27G00230
Unique NameNO27G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3074
Alignment locationchr27:81651..84724 -

Link to JBrowse

Properties
Property NameValue
DescriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:81651..84724 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Homology
BLAST of NO27G00230 vs. NCBI_GenBank
Match: CBN79451.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-16
Identity = 123/326 (37.73%), Postives = 168/326 (51.53%), Query Frame = 0
Query:   63 LASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHM-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFI 384
            L  FH  A+ I+K+I + S+KL H+ +LVQ++GLF+DP  +IN L++ IK+++Q LNT ++A+Q  V+                          +L +  KTFK +LQQRS+N+K Q D R  +   +  + L L  P  YRP+ +                 XXXXXXXXXXXXXXXXXXXXX                          XXXXXXXXXXXXXXXXXXXX    Q YLE+R+ A+++VE HI ELG IFN+LA M+ +QRE+                            LS+N  L      +L+ F + F +F+
Sbjct:   51 LGEFHSAASSIAKSIHKVSQKLEHLTKLVQQRGLFNDPVAEINSLVHVIKQEMQDLNTELDASQTYVNR-XXXXXXXXXXXXXXXXXXXXXXXMELINTAKTFKNVLQQRSNNLKAQKDHREMF-VGSQSSTLALAPPPAYRPLGISPLKPSGENGNGRSSLGXXXXXXXXXXXXXXXXXXXXXGGSPLPRPGQVTSYPEAEQEASADTPXXXXXXXXXXXXXXXXXXXXASGNQGYLESRSSAVQEVEGHIAELGLIFNKLATMLQDQREMVESVHDNVEDAGESVNQGHLALLNTMRSLSSNRRLALSVSGILLLFALFFFVFL 374          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: CCA26417.1 (syntaxinlike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-15
Identity = 75/319 (23.51%), Postives = 127/319 (39.81%), Query Frame = 0
Query:   66 FHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA 385
            F+  A+ ISK I + S++L  + +LV++  +F+DP E IN     +K+DI  +   ++    ++ ++ +  G   +   +HS+ +V  +++DL DAT+ FK +L+ R  N+K Q DRR +YG  T+ +   LGKP  +  +                                                                                     Q Y  +R +A+  +ESHIV++  +F RL+ +ISEQ E                          +S LSN   L FK F +L  F++ F+L +A
Sbjct:   43 FNSAASGISKEICQASRRLQTLTQLVRQHSVFNDPTEAINATTMLVKKDITSITKQLD----HLQEYVHSRGDVTKSQATHSEVIVSQMKSDLMDATQGFKNILETRQQNLKLQQDRRAKYGKPTSNS---LGKPLTFEKL----------------------------------------------SSNTLPRPQGVITSDTNDEEHERKPLIAAMATQQLVSTDQNYTASRIEAVSQIESHIVDINQLFGRLSTLISEQGEQVQRVDDQVDDMVRNISAGENELLKYFSSLSNTRMLAFKIFAILFIFVVFFLLVLA 308          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: PIL31706.1 (hypothetical protein GSI_06409 [Ganoderma sinense ZZ0214-1])

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-15
Identity = 82/314 (26.11%), Postives = 124/314 (39.49%), Query Frame = 0
Query:   70 AAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQ--QLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVL 382
            A+ I K I  T+ KL  +A+L +RK LFDD   +I++L Y IK+DI  +N  +   Q  V D K +    A+  QL  H+ +VV  L++ LAD + TFK +L+ R+ N+KE  DR  Q+   T  +A     P       +                                                                                     Y+++R+ AIE +ES I ELG IF +LA M++EQRE                          Y+ +S+N  L+ K F VL++F ++F+L
Sbjct:   52 ASAIGKDISSTTIKLGKLAQLAKRKTLFDDRPVEISELTYIIKQDIANINKQIAQLQAYVKDRKAQGAKSAEGKQLEEHNHNVVMLLQSKLADTSMTFKDVLEIRTQNMKESKDRTEQFMHST--SAAANQAPPSKHSSSISPTVGPARANTSTTGSLLYGNAQRHDPMGDGSGFGQSRLDTKGKGRATPQNGDILALDLHSAEEGTAAQNGDAFLQMQLVEQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIATNVSGAQRELLKYYASISSNRWLMLKVFGVLIAFFLIFIL 363          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: ETI45103.1 (hypothetical protein F443_10234 [Phytophthora parasitica P1569])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 76/321 (23.68%), Postives = 123/321 (38.32%), Query Frame = 0
Query:   64 ASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA 385
            A F+  A+ ISK + + SK+L  + +LV++  +F+DP E IN+L   +K+DI  +N  ++  Q  ++    R    ++Q   HS  +V  +++DL   T+ FK +L+ R  N+K Q  RR +YG   +     LGKP  ++                                                                                       Q Y E+RA+A+  +ESHIV++G +F RL+ +I EQ +L                         +S LSNN  L  K   +L+ F      F+A
Sbjct:   37 AQFNAAASDISKEVYQASKRLQQLTQLVRQNNMFNDPTEAINELAVLVKKDITDINMQLDNLQEYIN--SKRQSAPSRQAAKHSDAIVSLMKSDLMATTRGFKDILEVRQDNMKLQQSRRARYGKTASS---ALGKPLAFK----------------------------------APQPPRSNNSHTGSLQEVNLSNTLPRPGVSTGDNTEIQPLITTMTQEQIVAEQQNYTESRAEAVSQIESHIVDIGQLFGRLSTLIHEQGDLVRRIDDNVEESLVNVSSGEHELLKYFSSLSNNRMLALKISAILLVFXXXXXFFLA 318          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: PRW55959.1 (Qa- SYP3 Sed5p Syntaxin 5-type [Chlorella sorokiniana])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 109/321 (33.96%), Postives = 148/321 (46.11%), Query Frame = 0
Query:   64 ASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA 385
            + F   AA I   I  TS+KL  +A+L +R  +FDDPAE+IN+L   +K+DIQ LN  +   Q       +  G   +Q   HS  VV  LR+ L DAT+ FK +L  R+ N+K   +R+  + A     A    +P   +P                                                          XXXXXXXXXXXXXXXXXXXXXXXXX    +Y+ +RA+A+  VES IVELG IF +LA+M+ EQ E+                          S +S+N  L+ K F VL+ F+I F++F A
Sbjct:   53 SEFARRAAKIGMGIHSTSQKLQKLAQLARRTSMFDDPAEEINELSTVVKQDIQALNQAISDLQ------TFSGGGPNKQSADHSHTVVDNLRSRLKDATQEFKDVLTTRTDNLKAHQERKSMFSAAPEGGA--ARQPLFSQP------------------------------------GASFLPPNARNPLAPAVRGGLQXXXXXXXXXXXXXXXXXXXXXXXXXPAQDQYMASRAEALHQVESTIVELGGIFQQLAHMVHEQGEMATRIDENVEDTLGNVDAGQAQLLKYLSAISSNRFLIMKVFAVLLCFMIFFIMFPA 329          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: ETM44916.1 (hypothetical protein L914_09891 [Phytophthora parasitica] >ETO73715.1 hypothetical protein F444_10334 [Phytophthora parasitica P1976] >ETP14921.1 hypothetical protein F441_10170 [Phytophthora parasitica CJ01A1] >ETP42987.1 hypothetical protein F442_10137 [Phytophthora parasitica P10297] >KUF80776.1 Syntaxin-32 [Phytophthora nicotianae])

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-15
Identity = 76/321 (23.68%), Postives = 123/321 (38.32%), Query Frame = 0
Query:   64 ASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA 385
            A F+  A+ ISK + + SK+L  + +LV++  +F+DP E IN+L   +K+DI  +N  ++  Q  ++    R    ++Q   HS  +V  +++DL   T+ FK +L+ R  N+K Q  RR +YG   +     LGKP  ++                                                                                       Q Y E+RA+A+  +ESHIV++G +F RL+ +I EQ +L                         +S LSNN  L  K   +L+ F      F+A
Sbjct:   37 AQFNAAASDISKEVYQASKRLQQLTQLVRQNNMFNDPTEAINELAALVKKDITDINMQLDNLQEYIN--SKRQSAPSRQAAKHSDAIVSLMKSDLMATTRGFKDILEVRQDNMKLQQSRRARYGKTASS---ALGKPLAFK----------------------------------APQPPRSNNSHTGSLQEVNLSNTLPRPGVSTGDNTEIQPLITTMTQEQIVAEQQNYTESRAEAVSQIESHIVDIGQLFGRLSTLIHEQGDLVRRIDDNVEESLVNVSSGEHELLKYFSSLSNNRMLALKISAILLVFXXXXXFFLA 318          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: PCH33894.1 (t-SNARE [Wolfiporia cocos MD-104 SS10])

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-15
Identity = 82/328 (25.00%), Postives = 131/328 (39.94%), Query Frame = 0
Query:   64 ASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGT---QAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQY-------GARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVL 382
            + F   A+ I+K I  T+ KL  +A+L +RK LFDD   +I++L Y IK+DI  +N  + + Q +V     +  +   + +QL  H+ +VV  L++ LAD + TFK +L+ R+ N+KE  DR  Q+        ++   N+L+ G      PM                                                                                       Y+++R+ AIE +ES I ELG IF +LA M++EQRE                          Y+ +S+N  L+ K F VL+ F ++F+L
Sbjct:   46 SEFSKMASAIAKDISSTTIKLGKLAQLAKRKTLFDDRPVEISELTYIIKQDIANINKQIASLQSSVKQRNAQGASKTPEGKQLEEHNHNVVMLLQSKLADTSMTFKDVLEIRTQNMKESKDRTEQFMHSTSAAASQAPSNSLLFGNTQRQDPM-------------------------------GDGTLVSSRYDAKGKGRATPQPNGDILALDLGAAEEGSGQNGDAFMQMQLVEQQDNYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNVSGAQRELLKYYASISSNRWLMLKVFGVLIVFFLVFIL 342          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: OBZ79502.1 (Integral membrane protein sed5 [Grifola frondosa])

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-15
Identity = 82/328 (25.00%), Postives = 131/328 (39.94%), Query Frame = 0
Query:   64 ASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGT---QAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQY-------GARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVL 382
            + F   A+ I K I  T+ KL  +A+L +RK LFDD   +I++L Y IK+DI  +N  + + Q  V + K +  +   + +QL  H+ +VV  L++ LAD + TFK +L+ R+ N+KE  DR  Q+        ++   ++L+ G      PM                                                                                       Y+++R+ AIE +ES I ELG IF +LA M++EQRE                          Y+ +S+N  L+ K F VL+ F ++F+L
Sbjct:   49 SEFTRKASAIGKDISSTAIKLGKLAQLAKRKTLFDDRPVEISELTYIIKQDIANINRQIASLQSYVKERKSQGASKSPEGKQLEEHNHNVVMLLQSKLADTSMTFKDVLEVRTQNMKESKDRTEQFMHSTSAAASQAPASSLLFGNTQRQDPM------------------------------GDGSLSSSRYDAKGKGRATPQNNGDILALDLGSAEEGTASHNGDAFMQMQLVEQQDNYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNVSGAQRELLKYYASISSNRWLMLKIFGVLIVFFLVFIL 346          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: XP_014528736.1 (syntaxin-like protein [Blastocystis sp. subtype 4] >KNB45293.1 syntaxin-like protein [Blastocystis sp. subtype 4])

HSP 1 Score: 92.0 bits (227), Expect = 4.200e-15
Identity = 83/322 (25.78%), Postives = 125/322 (38.82%), Query Frame = 0
Query:   63 LASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA 385
            ++ F    A +S  + +T+ KL  +  LV+RK LFDD + +INQL  SIK+DI  +N  +E  ++ V   KY S     Q   + Q VV  L+ +L   TK F+ +L+ R  N++E   RR ++G        +LGKP VY+                                                                                        +YL  RAQA++D+E+H+ ELGSIF RL+ MI+EQ E+                            + +N  L+ K F VL+ FI    +F+A
Sbjct:   35 VSKFSRVTASLSNRVSKTTLKLQRLTDLVRRKSLFDDKSAEINQLTGSIKQDITSINAELEELEQFVRMQKYASA----QSREYDQGVVEVLKEELMGTTKDFRKVLETRHENLQETDKRRQKFGPSA---PALLGKPIVYQ---------------------------------------------SSTSPLMGSDKDTSDERTKLLPRPNNVTPSNNFAIQTSDVIANDYLHERAQAVQDIEAHMTELGSIFERLSTMITEQGEMIDRLDDNLDAAEVNVNMGYQEIVKYGQNVFSNRSLIMKLFGVLIFFIXXXXIFLA 304          
BLAST of NO27G00230 vs. NCBI_GenBank
Match: KNE90884.1 (hypothetical protein PSTG_15675 [Puccinia striiformis f. sp. tritici PST-78])

HSP 1 Score: 92.0 bits (227), Expect = 4.200e-15
Identity = 83/317 (26.18%), Postives = 126/317 (39.75%), Query Frame = 0
Query:   70 AAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQY-----GARTNENALVLGKPTVYRPMHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELXXXXXXXXXXXXXXXXXXXXXXXXXYSRLSNNGPLVFKSFLVLVSFIIMFVL 382
            A +I K IQ+T+ KLS +A+L +RK LFDD   +I++L Y IK+DI  LN  +   Q  V      +  Q Q +  H+ +VV  L++ LAD +  FK +L+ R+ N+K   DR  Q+     G  T   +++  +PT   P +                                                                                      YL+ R+ AIE +ES I ELGSIF++LA M+++Q E                          YS +S N  L+FK F +++ F ++FVL
Sbjct:  133 AGMIGKDIQQTTLKLSQLAQLAKRKTLFDDRPVEISELTYIIKQDIAQLNQQIAQLQTFVKQNLSTNRGQKQPVDEHNNNVVMMLQSKLADTSLGFKDVLEIRTQNMKATRDRSEQFHFNTPGVTTTTQSVLRSRPTSSSPFN-------NSHQSTDSPLYATQQAGVASAVNRSLYDSKGKGKSTTQDSGYQQNEYLALDMGKNSNQVESGGPQGYMQMQLTQDNSDAYLQQRSTAIESIESTITELGSIFSQLATMVAQQGEQVQRIDQDTMDIESNIQSAQSELLKFYSSISGNRMLMFKIFGMIMVFFLLFVL 442          
The following BLAST results are available for this feature:
BLAST of NO27G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN79451.11.700e-1637.73Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
CCA26417.11.400e-1523.51syntaxinlike protein putative [Albugo laibachii Nc... [more]
PIL31706.11.400e-1526.11hypothetical protein GSI_06409 [Ganoderma sinense ... [more]
ETI45103.11.900e-1523.68hypothetical protein F443_10234 [Phytophthora para... [more]
PRW55959.11.900e-1533.96Qa- SYP3 Sed5p Syntaxin 5-type [Chlorella sorokini... [more]
ETM44916.12.500e-1523.68hypothetical protein L914_09891 [Phytophthora para... [more]
PCH33894.12.500e-1525.00t-SNARE [Wolfiporia cocos MD-104 SS10][more]
OBZ79502.13.200e-1525.00Integral membrane protein sed5 [Grifola frondosa][more]
XP_014528736.14.200e-1525.78syntaxin-like protein [Blastocystis sp. subtype 4]... [more]
KNE90884.14.200e-1526.18hypothetical protein PSTG_15675 [Puccinia striifor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00230.1NO27G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|309812gene_10127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00230.1NO27G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00230 ID=NO27G00230|Name=NO27G00230|organism=Nannochloropsis oceanica|type=gene|length=3074bp
ATGGCAGACCGCACAGCCGAATTTAGGGCGTTAATTGCCTCTTTGCCAAA
GCCACCGGCAGGGATGAAGgtaggaaggggtagggagggagggagaatag
gatgggaagaagcagggaaaagaggggtttcgatgggggtgtgtagaaat
ggtttactgcgtgccctcgcaaataaagcagggatgtattgcgcagaagg
tatgctgcacgccgcttgtacacctacattgcaactgagaatgcacaagt
ttgagaaatgactgcacacgcgcatagctgcgaggcgttctttttcctct
ttctaatcacctcctacttcccctcccccctcgattttaccaccctcctc
catacagCCACCACCACCACCAAGGCGTTCTTCCGCCCTCTCACCCCCTG
TTCCCCTCGCTGCTCCTCCTCCGTCTTCCTCCTCATCTTCGTCCTCCTCA
AAAGCAAGTCAGACTGCGCGGTTCCTGGCCTCTTTCCATGGTGACGCCGC
TGTGATCAGTAAAGCCATCCAAGAAACGTCCAAGAAACTGAGTCACATGG
CGAGATgtaagtggaagaagaaaaaggagcgagagacaggaagggaggga
agaggggaataagggatggagggagggaaggggcgcgttcacgttaacgc
cgctgtggtgaacaaagtaaattgagttggaagggcgattgattcacgac
acgtccgaggcagacattgggaatactatattgggaagtattatatcatc
acattatgataatggatcttatgtatgttgtatattgtaaattacaatat
atgaatcgccaggacatgtgtgagacgaacacaagaaattattgacgcgt
aatgcacggtgtctgccttgaccagggagggtaggaggaagggagggagg
gaagaaaagagggagggagaaagggaggaggttgaatggtgtcctctttc
ccttcttttcatgtctcaagccaccctccgtccctccctccttccctccc
tccctccctccgacccagTGGTCCAACGCAAGGGCTTGTTCGACGACCCG
GCCGAGCAGATCAACCAATTAATGTACTCTATCAAAGAGGACATTCAGGG
ACTCAACACGCTGGTGGAAGCCACGCAGgtgagcaagccctcctttcctc
cctccctccctccctccctccctccctccctccctccctccctccgttcg
ttgaatgctcatctcctttcatttcctctgcctatccttcctctcttcct
ccctccctccctccctttctctctccctccctccctctttcacagAGAAA
TGTTGATGACTTCAAATACCGCTCGGGGACGCAGGCCCAGCAACTGACCA
Ggcaaggagggagggagggagggagggagggaggaagagagaaagagaga
gaaaaggggatctcttgctcatcattacggtagttacgtttgacccctcc
ctccctccctctctccctctcttcctccctccctccagCCATTCGCAGCA
CGTGGTAGGCACGTTGAGGACCGATCTGGCGGATGCGACCAAGACCTTTA
AGgtaggaagggagggagggtgggagggagggagggaaggagggagggaa
gggggggatggccgattcgaccaagacagccgtttgattagccttcctcc
ctcaccatttgcctccctccttctctcccttctcatttgcctccctccct
ccctaccgctcttcaaacatcttaaacatcaatcgacccggctgaatcaa
cactcatcctccccccttccccccgtccctccctcccttcctcgcccaag
ACTCTCCTCCAGCAGCGTTCTTCTAATGTCAAAGAGCAGTTCGACCGGCG
GGGCCAGTACGGGGCAAGGACAAACGAAAATGCCCTGGTCCTAGgtaagc
aggcagggagggagggagggagggagggaggaagggagggacggacggac
ggagggatgtggtcatcttgggaaatgtccattctcacccctcgaccaat
tatgctattatttcttcctccctcccttcattcctcttatcccccctctc
ttcctcgctccctgcagGCAAACCGACCGTCTATCGGCCCATGCACATGC
CTCCTCCTCCCCCTCCCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCACT
ACTTCCTCCTCCTCCCCCACCTCCTCCTCCTCCTCCTCCTCCTTGGCCTT
GCCCCGCCCCGCATCTGTGCAAGACACGGCAGGAGGAGGGGGATGGGCAG
TTTACGGAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGT
TTCCTGCAAGTGACTCAGCAGCAACAGCAGCAGCTGTTGATACCGGAGCA
Ggtgagggaaggataaagggacagagggaggaaaggaagttgctcctttc
caatgacaaaacacctatcccggttgcttatacatctctccttccttcct
ccctcccttcctccctccctccctccctccagGAATACCTCGAAGCCCGG
GCCCAAGCCATCGAAGACGTCGAGTCGCACATCGTCGAGCTAGGgtactt
ctcctccctccctccctccctccctccctcccttccttccttccttcctt
cctccctccttccctccctccaattcactgacacaccttctcctccctct
ctccctccccctctccctccctccctccctccctcatctagTTCAATTTT
CAACCGTCTGGCTAACATGATCTCGGAGCAACGGGAACTCGTAGAGCGgt
gaggacggagggaaagagaggaagggagggaagacggggaggaagacagt
gaattgatttatataatagattagcaagtcactttagctatcgttactcg
tcctcgtcgtaccattcacctagacccaaccctccctccctccctccctc
ccttccttcctcagGATCGAAGACAACGTGGACGACGCCCACGAGCGCGT
CTCGCGCACTCGCGATTATCTCCTTGGTGTCTACAGCCGGCTTTCTAATA
ATGGACCATTGGTTTTCAAATCGTTTTTGGTGCTTGTTTCGTTTATTATT
ATGTTCGTCTTGTTCATTGCATGA
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protein sequence of NO27G00230.1

>NO27G00230.1-protein ID=NO27G00230.1-protein|Name=NO27G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MADRTAEFRALIASLPKPPAGMKPPPPPRRSSALSPPVPLAAPPPSSSSS
SSSSKASQTARFLASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDP
AEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHV
VGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKP
TVYRPMHMPPPPPPSFPSSSSPSTTTSSSSPTSSSSSSSLALPRPASVQD
TAGGGGWAVYGGQQQQQQQQQQQGGFLQVTQQQQQQLLIPEQEYLEARAQ
AIEDVESHIVELGSIFNRLANMISEQRELVERIEDNVDDAHERVSRTRDY
LLGVYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA*
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Synonyms
Publications