NO27G00230.1, NO27G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00230.1
Unique NameNO27G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr27:81651..84724 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:81651..84724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00230.1 vs.
Match: CBN79451.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 168.7 bits (426), Expect = 3.500e-38
Identity = 140/398 (35.18%), Postives = 210/398 (52.76%), Query Frame = 0 
Query:    1 MADRTAEFRALIASLPKPPAGMKP-PPPPRRSSALSPPVPLAAPPPSSSSSSSSSKASQTARFLASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDPAEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHVVGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKPTVYRPMHMPPPPPPSFPSSSSPSTTTSSSSPTSSSSSSSLA---------LPRPASVQ-----DTAGGGGWAVYGGQQQQQQQQQQQGGFLQVTQQQQQQLLIPEQEYLEARAQAIEDVESHIVELGSIFNRLANMISEQRELVERIEDNVDDAHERVSRTRDYLLGVYSRLSNNGPLVFKSFLVLVSFIIMFVLFI 384
            M DRT +FR + A+LP  P    P PP P+R             P ++  ++ +   +     L  FH  A+ I+K+I + S+KL H+ +LVQ++GLF+DP  +IN L++ IK+++Q LNT ++A+Q  V+  K   G +  Q  +HS +VVG L+ +L +  KTFK +LQQRS+N+K Q D R  +   +  + L L  P  YRP+ + P  P     +   S      +        +L          LPRP  V      +        +   Q QQQQQQQQ   F+Q+      QL    Q YLE+R+ A+++VE HI ELG IFN+LA M+ +QRE+VE + DNV+DA E V++    LL     LS+N  L      +L+ F + F +F+
Sbjct:    1 MTDRTDDFRLIAAALPPQPRRASPHPPKPKR-------------PAAAGGAAGAGGVAHQVSTLGEFHSAASSIAKSIHKVSQKLEHLTKLVQQRGLFNDPVAEINSLVHVIKQEMQDLNTELDASQTYVNRRKQEMGDR-NQAANHSVNVVGQLKMELINTAKTFKNVLQQRSNNLKAQKDHREMF-VGSQSSTLALAPPPAYRPLGISPLKPSGENGNGRSSLGGGQGANGGPPPGGALGAAGGVGGSPLPRPGQVTSYPEAEQEASADTPLIAAQGQQQQQQQQ---FMQM------QLASGNQGYLESRSSAVQEVEGHIAELGLIFNKLATMLQDQREMVESVHDNVEDAGESVNQGHLALLNTMRSLSSNRRLALSVSGILLLFALFFFVFL 374
The following BLAST results are available for this feature:
BLAST of NO27G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79451.13.500e-3835.18Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00230NO27G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00230.1NO27G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00230.1.cds1NO27G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds2NO27G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds3NO27G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds4NO27G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds5NO27G00230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds6NO27G00230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds7NO27G00230.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds8NO27G00230.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds9NO27G00230.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00230.1.cds10NO27G00230.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00230.1 ID=NO27G00230.1|Name=NO27G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ATGGCAGACCGCACAGCCGAATTTAGGGCGTTAATTGCCTCTTTGCCAAA
GCCACCGGCAGGGATGAAGCCACCACCACCACCAAGGCGTTCTTCCGCCC
TCTCACCCCCTGTTCCCCTCGCTGCTCCTCCTCCGTCTTCCTCCTCATCT
TCGTCCTCCTCAAAAGCAAGTCAGACTGCGCGGTTCCTGGCCTCTTTCCA
TGGTGACGCCGCTGTGATCAGTAAAGCCATCCAAGAAACGTCCAAGAAAC
TGAGTCACATGGCGAGATTGGTCCAACGCAAGGGCTTGTTCGACGACCCG
GCCGAGCAGATCAACCAATTAATGTACTCTATCAAAGAGGACATTCAGGG
ACTCAACACGCTGGTGGAAGCCACGCAGAGAAATGTTGATGACTTCAAAT
ACCGCTCGGGGACGCAGGCCCAGCAACTGACCAGCCATTCGCAGCACGTG
GTAGGCACGTTGAGGACCGATCTGGCGGATGCGACCAAGACCTTTAAGAC
TCTCCTCCAGCAGCGTTCTTCTAATGTCAAAGAGCAGTTCGACCGGCGGG
GCCAGTACGGGGCAAGGACAAACGAAAATGCCCTGGTCCTAGGCAAACCG
ACCGTCTATCGGCCCATGCACATGCCTCCTCCTCCCCCTCCCTCTTTCCC
TTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTCCTCCCCCACCTCCT
CCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCGCATCTGTGCAAGAC
ACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAGGGAGGTTTCCTGCAAGTGACTCAGCAGCAAC
AGCAGCAGCTGTTGATACCGGAGCAGGAATACCTCGAAGCCCGGGCCCAA
GCCATCGAAGACGTCGAGTCGCACATCGTCGAGCTAGGTTCAATTTTCAA
CCGTCTGGCTAACATGATCTCGGAGCAACGGGAACTCGTAGAGCGGATCG
AAGACAACGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTAT
CTCCTTGGTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCAA
ATCGTTTTTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATTG
CATGA
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protein sequence of NO27G00230.1

>NO27G00230.1-protein ID=NO27G00230.1-protein|Name=NO27G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MADRTAEFRALIASLPKPPAGMKPPPPPRRSSALSPPVPLAAPPPSSSSS
SSSSKASQTARFLASFHGDAAVISKAIQETSKKLSHMARLVQRKGLFDDP
AEQINQLMYSIKEDIQGLNTLVEATQRNVDDFKYRSGTQAQQLTSHSQHV
VGTLRTDLADATKTFKTLLQQRSSNVKEQFDRRGQYGARTNENALVLGKP
TVYRPMHMPPPPPPSFPSSSSPSTTTSSSSPTSSSSSSSLALPRPASVQD
TAGGGGWAVYGGQQQQQQQQQQQGGFLQVTQQQQQQLLIPEQEYLEARAQ
AIEDVESHIVELGSIFNRLANMISEQRELVERIEDNVDDAHERVSRTRDY
LLGVYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA*
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mRNA from alignment at chr27:81651..84724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00230.1 ID=NO27G00230.1|Name=NO27G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=3074bp|location=Sequence derived from alignment at chr27:81651..84724- (Nannochloropsis oceanica)
ATGGCAGACCGCACAGCCGAATTTAGGGCGTTAATTGCCTCTTTGCCAAA
GCCACCGGCAGGGATGAAGGTAGGAAGGGGTAGGGAGGGAGGGAGAATAG
GATGGGAAGAAGCAGGGAAAAGAGGGGTTTCGATGGGGGTGTGTAGAAAT
GGTTTACTGCGTGCCCTCGCAAATAAAGCAGGGATGTATTGCGCAGAAGG
TATGCTGCACGCCGCTTGTACACCTACATTGCAACTGAGAATGCACAAGT
TTGAGAAATGACTGCACACGCGCATAGCTGCGAGGCGTTCTTTTTCCTCT
TTCTAATCACCTCCTACTTCCCCTCCCCCCTCGATTTTACCACCCTCCTC
CATACAGCCACCACCACCACCAAGGCGTTCTTCCGCCCTCTCACCCCCTG
TTCCCCTCGCTGCTCCTCCTCCGTCTTCCTCCTCATCTTCGTCCTCCTCA
AAAGCAAGTCAGACTGCGCGGTTCCTGGCCTCTTTCCATGGTGACGCCGC
TGTGATCAGTAAAGCCATCCAAGAAACGTCCAAGAAACTGAGTCACATGG
CGAGATGTAAGTGGAAGAAGAAAAAGGAGCGAGAGACAGGAAGGGAGGGA
AGAGGGGAATAAGGGATGGAGGGAGGGAAGGGGCGCGTTCACGTTAACGC
CGCTGTGGTGAACAAAGTAAATTGAGTTGGAAGGGCGATTGATTCACGAC
ACGTCCGAGGCAGACATTGGGAATACTATATTGGGAAGTATTATATCATC
ACATTATGATAATGGATCTTATGTATGTTGTATATTGTAAATTACAATAT
ATGAATCGCCAGGACATGTGTGAGACGAACACAAGAAATTATTGACGCGT
AATGCACGGTGTCTGCCTTGACCAGGGAGGGTAGGAGGAAGGGAGGGAGG
GAAGAAAAGAGGGAGGGAGAAAGGGAGGAGGTTGAATGGTGTCCTCTTTC
CCTTCTTTTCATGTCTCAAGCCACCCTCCGTCCCTCCCTCCTTCCCTCCC
TCCCTCCCTCCGACCCAGTGGTCCAACGCAAGGGCTTGTTCGACGACCCG
GCCGAGCAGATCAACCAATTAATGTACTCTATCAAAGAGGACATTCAGGG
ACTCAACACGCTGGTGGAAGCCACGCAGGTGAGCAAGCCCTCCTTTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTTCG
TTGAATGCTCATCTCCTTTCATTTCCTCTGCCTATCCTTCCTCTCTTCCT
CCCTCCCTCCCTCCCTTTCTCTCTCCCTCCCTCCCTCTTTCACAGAGAAA
TGTTGATGACTTCAAATACCGCTCGGGGACGCAGGCCCAGCAACTGACCA
GGCAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGAGAAAGAGAGA
GAAAAGGGGATCTCTTGCTCATCATTACGGTAGTTACGTTTGACCCCTCC
CTCCCTCCCTCTCTCCCTCTCTTCCTCCCTCCCTCCAGCCATTCGCAGCA
CGTGGTAGGCACGTTGAGGACCGATCTGGCGGATGCGACCAAGACCTTTA
AGGTAGGAAGGGAGGGAGGGTGGGAGGGAGGGAGGGAAGGAGGGAGGGAA
GGGGGGGATGGCCGATTCGACCAAGACAGCCGTTTGATTAGCCTTCCTCC
CTCACCATTTGCCTCCCTCCTTCTCTCCCTTCTCATTTGCCTCCCTCCCT
CCCTACCGCTCTTCAAACATCTTAAACATCAATCGACCCGGCTGAATCAA
CACTCATCCTCCCCCCTTCCCCCCGTCCCTCCCTCCCTTCCTCGCCCAAG
ACTCTCCTCCAGCAGCGTTCTTCTAATGTCAAAGAGCAGTTCGACCGGCG
GGGCCAGTACGGGGCAAGGACAAACGAAAATGCCCTGGTCCTAGGTAAGC
AGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGACGGACGGAC
GGAGGGATGTGGTCATCTTGGGAAATGTCCATTCTCACCCCTCGACCAAT
TATGCTATTATTTCTTCCTCCCTCCCTTCATTCCTCTTATCCCCCCTCTC
TTCCTCGCTCCCTGCAGGCAAACCGACCGTCTATCGGCCCATGCACATGC
CTCCTCCTCCCCCTCCCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCACT
ACTTCCTCCTCCTCCCCCACCTCCTCCTCCTCCTCCTCCTCCTTGGCCTT
GCCCCGCCCCGCATCTGTGCAAGACACGGCAGGAGGAGGGGGATGGGCAG
TTTACGGAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGT
TTCCTGCAAGTGACTCAGCAGCAACAGCAGCAGCTGTTGATACCGGAGCA
GGTGAGGGAAGGATAAAGGGACAGAGGGAGGAAAGGAAGTTGCTCCTTTC
CAATGACAAAACACCTATCCCGGTTGCTTATACATCTCTCCTTCCTTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCAGGAATACCTCGAAGCCCGG
GCCCAAGCCATCGAAGACGTCGAGTCGCACATCGTCGAGCTAGGGTACTT
CTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTT
CCTCCCTCCTTCCCTCCCTCCAATTCACTGACACACCTTCTCCTCCCTCT
CTCCCTCCCCCTCTCCCTCCCTCCCTCCCTCCCTCATCTAGTTCAATTTT
CAACCGTCTGGCTAACATGATCTCGGAGCAACGGGAACTCGTAGAGCGGT
GAGGACGGAGGGAAAGAGAGGAAGGGAGGGAAGACGGGGAGGAAGACAGT
GAATTGATTTATATAATAGATTAGCAAGTCACTTTAGCTATCGTTACTCG
TCCTCGTCGTACCATTCACCTAGACCCAACCCTCCCTCCCTCCCTCCCTC
CCTTCCTTCCTCAGGATCGAAGACAACGTGGACGACGCCCACGAGCGCGT
CTCGCGCACTCGCGATTATCTCCTTGGTGTCTACAGCCGGCTTTCTAATA
ATGGACCATTGGTTTTCAAATCGTTTTTGGTGCTTGTTTCGTTTATTATT
ATGTTCGTCTTGTTCATTGCATGA
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Coding sequence (CDS) from alignment at chr27:81651..84724-

>NO27G00230.1 ID=NO27G00230.1|Name=NO27G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr27:81651..84724- (Nannochloropsis oceanica)
ATGGCAGACCGCACAGCCGAATTTAGGGCGTTAATTGCCTCTTTGCCAAA
GCCACCGGCAGGGATGAAGCCACCACCACCACCAAGGCGTTCTTCCGCCC
TCTCACCCCCTGTTCCCCTCGCTGCTCCTCCTCCGTCTTCCTCCTCATCT
TCGTCCTCCTCAAAAGCAAGTCAGACTGCGCGGTTCCTGGCCTCTTTCCA
TGGTGACGCCGCTGTGATCAGTAAAGCCATCCAAGAAACGTCCAAGAAAC
TGAGTCACATGGCGAGATTGGTCCAACGCAAGGGCTTGTTCGACGACCCG
GCCGAGCAGATCAACCAATTAATGTACTCTATCAAAGAGGACATTCAGGG
ACTCAACACGCTGGTGGAAGCCACGCAGAGAAATGTTGATGACTTCAAAT
ACCGCTCGGGGACGCAGGCCCAGCAACTGACCAGCCATTCGCAGCACGTG
GTAGGCACGTTGAGGACCGATCTGGCGGATGCGACCAAGACCTTTAAGAC
TCTCCTCCAGCAGCGTTCTTCTAATGTCAAAGAGCAGTTCGACCGGCGGG
GCCAGTACGGGGCAAGGACAAACGAAAATGCCCTGGTCCTAGGCAAACCG
ACCGTCTATCGGCCCATGCACATGCCTCCTCCTCCCCCTCCCTCTTTCCC
TTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTCCTCCCCCACCTCCT
CCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCGCATCTGTGCAAGAC
ACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAGGGAGGTTTCCTGCAAGTGACTCAGCAGCAAC
AGCAGCAGCTGTTGATACCGGAGCAGGAATACCTCGAAGCCCGGGCCCAA
GCCATCGAAGACGTCGAGTCGCACATCGTCGAGCTAGGTTCAATTTTCAA
CCGTCTGGCTAACATGATCTCGGAGCAACGGGAACTCGTAGAGCGGATCG
AAGACAACGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTAT
CTCCTTGGTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCAA
ATCGTTTTTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATTG
CATGA
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Synonyms
Publications