NO27G00190, NO27G00190 (gene) Nannochloropsis oceanica

Overview
NameNO27G00190
Unique NameNO27G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2417
Alignment locationchr27:65747..68163 -

Link to JBrowse

Properties
Property NameValue
DescriptionSplicing factor U2AF 65 kDa subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:65747..68163 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00190.1NO27G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00190.1NO27G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00190 ID=NO27G00190|Name=NO27G00190|organism=Nannochloropsis oceanica|type=gene|length=2417bp
ATGGCAGGCCGGGGCCGAGGGCGGGAGCTGACGCTACCCGCGTGGATGGT
CAAGCAGCAGCAAGAAGGCGGCGGCGGCATAGGAGAGGGCGGAAGCGACG
GGAGAGGCCTTGGCGGAGGCGGGGAAGGGCACAACAACCTGCAGCTGCCA
GCGTCGGAGCATCAATTTGAGGACATACCACCGTCAAGGAGGGACGATGT
GGGAATGgtaagacgaaaggtggctttgcgggatggatggggggctggct
gccagggtggatgctccctttctaggtggtggttgatttcgttaaattgt
ttttgatgaggtcggcgtcggccacggtcaagcctcaactaaacagaaat
attatgttgtatgatcagctttattattgggtgtttgtatccaaggacat
gtctatcatagtctttaccaacctccccttcctcccctccctccctccct
ccctccctcctcaaagGACCGAGGCTCAAGTCGGAACAGGGACAGAGGAG
ACAGAGACAGAGACAGAGACAGGGGAAGGGATAGTCGGGATAGGTCGCGA
TCGCGGTCCCCGCCACGCCGCGGGGGAGGAAACCGAAGACGgtaaggata
agagagggtctggggaaggaagaaatgattgaacgagggtagatgaatcg
acaggaatcctcttgtttaaggtatgcacatgcctacttgatacatacat
actacctttttaaattactctcttaatatatacacaaattacctgcacag
gcatgaacctcctgtttaatgtatgcacataagtacttaatatatatata
cacatctactaccaccctacagGTCGTCGCGTTCGAGGTCTCGAAGCCCT
TACCGCCGTCGGCGCAGTCCATCAAGgtacgtccctcccctccttccatc
ccttcttgcttccctccctccatccctccttccttccctccctccctcct
tccctctttccttccctccctccctccctccctccctccctccctccttt
cccccctctttgcgtgccacccacctacctccttctcaatttctcaattt
catcccctcccccccccttcccccctcgtctctcttatgcttaccctcct
tctctcctttgccccctcccttccttcctgtcttccacctgatccgagcc
tctctcaccatacccctcccttccttttcccgtcatctccttctacttgc
agTCGCTCCTACAGTCGGAGCCGCAGCCGCAGCCCCCGCTCCCGTCGACG
GGGGGATCGGGAAGGGAGGGACGGACGGAGGGAGGGAAGGAGGAACGGAT
CGAATTTCGACGTGGCGCCTCCTGCAGCTGCCGGACTGTCCTCGCAACGA
GCGGCCGATCTGCTCATGGCAGCCGCGATGGGAGGGAGCGGGGGAGGGAG
CGGCGGAGGGAGCGGCGGAGGGAGCGTACGGAGCAATAATGCCAGTCAAT
TGATGGgtatgtccgtcgtggtagctgcttcaaaatgtcccctccctccc
cccctcccttccttcctcccttggacgaggaccccgattgcttcataccc
cctccctccctccctccctccctccctccctccctccctcagGCGGTGCC
CTCTCGATCCAAGCCACGGCCAATGGCGGCCTCGTCGGGACCATCAACGG
CATGCAGGTCATCCTCCCTACCCTGgtgagccctccctccctccctccct
ttcactcacacggcggtgctgcttcttcatccctccctcgatcagcccct
tgtgttagcatcgtgcctgtgcactcaaaagcgctcctccctccctccct
cccttcctccctacgcatagGGCGGAGGTCCAGTGGGCGGTAGTGCTGCT
CCTCCTTCCCTTCCTCAATCGTCGGCCGGGCCTGTCACCCACGTGCCTAT
GTACGGCGACACGCAATATGGTACCCGGAACGCCCGCCGGATCTACGTTG
GGGgtgaggggaggaagggagggaggaagggagggaggaaggaaggaagg
gagggagggaggaagggagggagggaggaaggaaggaaggaaggaaggga
gggagggagggagggagggaggagggagggagggagggagggaggaaggg
agggaggggaggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnggaaagggggaacggaggaggggaagagggaggagg
aaggaagtgcaatagatacgaatacgttcaaattatgtgtacgtgtgagt
cgcctggttgtccgtgtcttggtacatttgacctccaaatacgttccctc
ccttctttccctccgcttccagcctcccttcctcccttttatagATACGC
ACCTGCAGCCGCTCTGA
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protein sequence of NO27G00190.1

>NO27G00190.1-protein ID=NO27G00190.1-protein|Name=NO27G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MAGRGRGRELTLPAWMVKQQQEGGGGIGEGGSDGRGLGGGGEGHNNLQLP
ASEHQFEDIPPSRRDDVGMDRGSSRNRDRGDRDRDRDRGRDSRDRSRSRS
PPRRGGGNRRRSSRSRSRSPYRRRRSPSSRSYSRSRSRSPRSRRRGDREG
RDGRREGRRNGSNFDVAPPAAAGLSSQRAADLLMAAAMGGSGGGSGGGSG
GGSVRSNNASQLMGGALSIQATANGGLVGTINGMQVILPTLGGGPVGGSA
APPSLPQSSAGPVTHVPMYGDTQYGTRNARRIYVGDTHLQPL*
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Synonyms
Publications