NO27G00190.1, NO27G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00190.1
Unique NameNO27G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr27:65747..68163 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:65747..68163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00190NO27G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00190.1NO27G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00190.1.cds1NO27G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds2NO27G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds3NO27G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds4NO27G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds5NO27G00190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds6NO27G00190.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00190.1.cds7NO27G00190.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00190.1 ID=NO27G00190.1|Name=NO27G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGGCAGGCCGGGGCCGAGGGCGGGAGCTGACGCTACCCGCGTGGATGGT
CAAGCAGCAGCAAGAAGGCGGCGGCGGCATAGGAGAGGGCGGAAGCGACG
GGAGAGGCCTTGGCGGAGGCGGGGAAGGGCACAACAACCTGCAGCTGCCA
GCGTCGGAGCATCAATTTGAGGACATACCACCGTCAAGGAGGGACGATGT
GGGAATGGACCGAGGCTCAAGTCGGAACAGGGACAGAGGAGACAGAGACA
GAGACAGAGACAGGGGAAGGGATAGTCGGGATAGGTCGCGATCGCGGTCC
CCGCCACGCCGCGGGGGAGGAAACCGAAGACGGTCGTCGCGTTCGAGGTC
TCGAAGCCCTTACCGCCGTCGGCGCAGTCCATCAAGTCGCTCCTACAGTC
GGAGCCGCAGCCGCAGCCCCCGCTCCCGTCGACGGGGGGATCGGGAAGGG
AGGGACGGACGGAGGGAGGGAAGGAGGAACGGATCGAATTTCGACGTGGC
GCCTCCTGCAGCTGCCGGACTGTCCTCGCAACGAGCGGCCGATCTGCTCA
TGGCAGCCGCGATGGGAGGGAGCGGGGGAGGGAGCGGCGGAGGGAGCGGC
GGAGGGAGCGTACGGAGCAATAATGCCAGTCAATTGATGGGCGGTGCCCT
CTCGATCCAAGCCACGGCCAATGGCGGCCTCGTCGGGACCATCAACGGCA
TGCAGGTCATCCTCCCTACCCTGGGCGGAGGTCCAGTGGGCGGTAGTGCT
GCTCCTCCTTCCCTTCCTCAATCGTCGGCCGGGCCTGTCACCCACGTGCC
TATGTACGGCGACACGCAATATGGTACCCGGAACGCCCGCCGGATCTACG
TTGGGGATACGCACCTGCAGCCGCTCTGA
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protein sequence of NO27G00190.1

>NO27G00190.1-protein ID=NO27G00190.1-protein|Name=NO27G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MAGRGRGRELTLPAWMVKQQQEGGGGIGEGGSDGRGLGGGGEGHNNLQLP
ASEHQFEDIPPSRRDDVGMDRGSSRNRDRGDRDRDRDRGRDSRDRSRSRS
PPRRGGGNRRRSSRSRSRSPYRRRRSPSSRSYSRSRSRSPRSRRRGDREG
RDGRREGRRNGSNFDVAPPAAAGLSSQRAADLLMAAAMGGSGGGSGGGSG
GGSVRSNNASQLMGGALSIQATANGGLVGTINGMQVILPTLGGGPVGGSA
APPSLPQSSAGPVTHVPMYGDTQYGTRNARRIYVGDTHLQPL*
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mRNA from alignment at chr27:65747..68163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00190.1 ID=NO27G00190.1|Name=NO27G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp|location=Sequence derived from alignment at chr27:65747..68163- (Nannochloropsis oceanica)
ATGGCAGGCCGGGGCCGAGGGCGGGAGCTGACGCTACCCGCGTGGATGGT
CAAGCAGCAGCAAGAAGGCGGCGGCGGCATAGGAGAGGGCGGAAGCGACG
GGAGAGGCCTTGGCGGAGGCGGGGAAGGGCACAACAACCTGCAGCTGCCA
GCGTCGGAGCATCAATTTGAGGACATACCACCGTCAAGGAGGGACGATGT
GGGAATGGTAAGACGAAAGGTGGCTTTGCGGGATGGATGGGGGGCTGGCT
GCCAGGGTGGATGCTCCCTTTCTAGGTGGTGGTTGATTTCGTTAAATTGT
TTTTGATGAGGTCGGCGTCGGCCACGGTCAAGCCTCAACTAAACAGAAAT
ATTATGTTGTATGATCAGCTTTATTATTGGGTGTTTGTATCCAAGGACAT
GTCTATCATAGTCTTTACCAACCTCCCCTTCCTCCCCTCCCTCCCTCCCT
CCCTCCCTCCTCAAAGGACCGAGGCTCAAGTCGGAACAGGGACAGAGGAG
ACAGAGACAGAGACAGAGACAGGGGAAGGGATAGTCGGGATAGGTCGCGA
TCGCGGTCCCCGCCACGCCGCGGGGGAGGAAACCGAAGACGGTAAGGATA
AGAGAGGGTCTGGGGAAGGAAGAAATGATTGAACGAGGGTAGATGAATCG
ACAGGAATCCTCTTGTTTAAGGTATGCACATGCCTACTTGATACATACAT
ACTACCTTTTTAAATTACTCTCTTAATATATACACAAATTACCTGCACAG
GCATGAACCTCCTGTTTAATGTATGCACATAAGTACTTAATATATATATA
CACATCTACTACCACCCTACAGGTCGTCGCGTTCGAGGTCTCGAAGCCCT
TACCGCCGTCGGCGCAGTCCATCAAGGTACGTCCCTCCCCTCCTTCCATC
CCTTCTTGCTTCCCTCCCTCCATCCCTCCTTCCTTCCCTCCCTCCCTCCT
TCCCTCTTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTT
CCCCCCTCTTTGCGTGCCACCCACCTACCTCCTTCTCAATTTCTCAATTT
CATCCCCTCCCCCCCCCTTCCCCCCTCGTCTCTCTTATGCTTACCCTCCT
TCTCTCCTTTGCCCCCTCCCTTCCTTCCTGTCTTCCACCTGATCCGAGCC
TCTCTCACCATACCCCTCCCTTCCTTTTCCCGTCATCTCCTTCTACTTGC
AGTCGCTCCTACAGTCGGAGCCGCAGCCGCAGCCCCCGCTCCCGTCGACG
GGGGGATCGGGAAGGGAGGGACGGACGGAGGGAGGGAAGGAGGAACGGAT
CGAATTTCGACGTGGCGCCTCCTGCAGCTGCCGGACTGTCCTCGCAACGA
GCGGCCGATCTGCTCATGGCAGCCGCGATGGGAGGGAGCGGGGGAGGGAG
CGGCGGAGGGAGCGGCGGAGGGAGCGTACGGAGCAATAATGCCAGTCAAT
TGATGGGTATGTCCGTCGTGGTAGCTGCTTCAAAATGTCCCCTCCCTCCC
CCCCTCCCTTCCTTCCTCCCTTGGACGAGGACCCCGATTGCTTCATACCC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCGGTGCC
CTCTCGATCCAAGCCACGGCCAATGGCGGCCTCGTCGGGACCATCAACGG
CATGCAGGTCATCCTCCCTACCCTGGTGAGCCCTCCCTCCCTCCCTCCCT
TTCACTCACACGGCGGTGCTGCTTCTTCATCCCTCCCTCGATCAGCCCCT
TGTGTTAGCATCGTGCCTGTGCACTCAAAAGCGCTCCTCCCTCCCTCCCT
CCCTTCCTCCCTACGCATAGGGCGGAGGTCCAGTGGGCGGTAGTGCTGCT
CCTCCTTCCCTTCCTCAATCGTCGGCCGGGCCTGTCACCCACGTGCCTAT
GTACGGCGACACGCAATATGGTACCCGGAACGCCCGCCGGATCTACGTTG
GGGGTGAGGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGAAGGAAGG
GAGGGAGGGAGGAAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGAAGGG
AGGGAGGGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGAAAGGGGGAACGGAGGAGGGGAAGAGGGAGGAGG
AAGGAAGTGCAATAGATACGAATACGTTCAAATTATGTGTACGTGTGAGT
CGCCTGGTTGTCCGTGTCTTGGTACATTTGACCTCCAAATACGTTCCCTC
CCTTCTTTCCCTCCGCTTCCAGCCTCCCTTCCTCCCTTTTATAGATACGC
ACCTGCAGCCGCTCTGA
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Coding sequence (CDS) from alignment at chr27:65747..68163-

>NO27G00190.1 ID=NO27G00190.1|Name=NO27G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr27:65747..68163- (Nannochloropsis oceanica)
ATGGCAGGCCGGGGCCGAGGGCGGGAGCTGACGCTACCCGCGTGGATGGT
CAAGCAGCAGCAAGAAGGCGGCGGCGGCATAGGAGAGGGCGGAAGCGACG
GGAGAGGCCTTGGCGGAGGCGGGGAAGGGCACAACAACCTGCAGCTGCCA
GCGTCGGAGCATCAATTTGAGGACATACCACCGTCAAGGAGGGACGATGT
GGGAATGGACCGAGGCTCAAGTCGGAACAGGGACAGAGGAGACAGAGACA
GAGACAGAGACAGGGGAAGGGATAGTCGGGATAGGTCGCGATCGCGGTCC
CCGCCACGCCGCGGGGGAGGAAACCGAAGACGGTCGTCGCGTTCGAGGTC
TCGAAGCCCTTACCGCCGTCGGCGCAGTCCATCAAGTCGCTCCTACAGTC
GGAGCCGCAGCCGCAGCCCCCGCTCCCGTCGACGGGGGGATCGGGAAGGG
AGGGACGGACGGAGGGAGGGAAGGAGGAACGGATCGAATTTCGACGTGGC
GCCTCCTGCAGCTGCCGGACTGTCCTCGCAACGAGCGGCCGATCTGCTCA
TGGCAGCCGCGATGGGAGGGAGCGGGGGAGGGAGCGGCGGAGGGAGCGGC
GGAGGGAGCGTACGGAGCAATAATGCCAGTCAATTGATGGGCGGTGCCCT
CTCGATCCAAGCCACGGCCAATGGCGGCCTCGTCGGGACCATCAACGGCA
TGCAGGTCATCCTCCCTACCCTGGGCGGAGGTCCAGTGGGCGGTAGTGCT
GCTCCTCCTTCCCTTCCTCAATCGTCGGCCGGGCCTGTCACCCACGTGCC
TATGTACGGCGACACGCAATATGGTACCCGGAACGCCCGCCGGATCTACG
TTGGGGATACGCACCTGCAGCCGCTCTGA
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Synonyms
Publications