NO27G00170, NO27G00170 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00170 vs. NCBI_GenBank
Match: CBN76841.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.4 bits (220), Expect = 5.700e-14 Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0
Query: 693 SMMMVGETVDSSKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWR----GETLEMLETAF-TKHKLRASLLDTLRRYNSLPLFLAGITQELFETST 810
S M +T D+ K+ RLKE +K+RIN +R Y LTGY I L D + LRSMYAE + DCL+FQ + G LE++ET +H + ++ LR+ +S+P FL+ +T ELFE T
Sbjct: 634 SGMRGADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKPQSEGGGLELVETPLAVQHMDKINMY--LRKCDSIPAFLSSLTAELFEKQT 753
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_008870272.1 (hypothetical protein H310_06845 [Aphanomyces invadans] >ETW01274.1 hypothetical protein H310_06845 [Aphanomyces invadans]) HSP 1 Score: 84.0 bits (206), Expect = 2.400e-12 Identity = 80/286 (27.97%), Postives = 125/286 (43.71%), Query Frame = 0
Query: 533 LEEMLANALSSLKEMEGKQAALASPLILSNLQARLSSLTSALEREEREKEGWKEEAKKKEQRLSKMEGELAGLESRVAKG----EDVKILHFKENPTVL----FLRSETLTARQEAEGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSMMMVGETVDS-SKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGETLEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETST 810
LE L NA ++ ++ Q L SP +L+ + R++ L AL +E K + + + L +++ A +E R+AKG + K+L NP +E R+E E LK S +T++ K +QRLKE F+++I +RD YQ TGY + D ++P++ LRS+YAE++ D + FQ+ LE+LET F L + L NS+P FL+G+T LFE T
Sbjct: 515 LETSLKNAEETIATLQVTQQTLPSPALLAKTKGRVTELEEALRQE-------KMTSLQLQAHLEQVQANAALVERRLAKGAVNQDSTKVLPLSTNPMSASKSKLETAEMAELRRENERLKEIVQNVNVQTPGPKTILPTPMK--------------------------SASTSHDTIEGLQKMNQRLKEVFREQIAKYRDAVYQCTGYKV----DLKYPELLLRSIYAENEGDEIKFQFNNGELELLETPFVA-GLDQRNMAYLTICNSIPAFLSGVTLALFEKQT 762
BLAST of NO27G00170 vs. NCBI_GenBank
Match: OEU18554.1 (hypothetical protein FRACYDRAFT_183745 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 83.2 bits (204), Expect = 4.100e-12 Identity = 41/114 (35.96%), Postives = 70/114 (61.40%), Query Frame = 0
Query: 701 VDSSKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQW----RGETLEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
VD +K HQRLK++FK++I+ FR+ Y +TGY + + D + + +RS++AE ++D L+FQW +L++L T K + + + +++SLP F+A + LFE TM
Sbjct: 392 VDPNKLHQRLKQSFKEQISRFREGVYLITGYKVDMIPDNDRYKFKVRSVFAEREKDHLVFQWPEGNHVTSLDLLNTEHAKILTKTPSYEYMTKFHSLPAFMASVQLSLFENQTM 505
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_009823066.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV88203.1 hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 82.8 bits (203), Expect = 5.400e-12 Identity = 79/287 (27.53%), Postives = 129/287 (44.95%), Query Frame = 0
Query: 533 LEEMLANALSSLKEMEGKQAALASPLILSNLQARLSSLTSALEREEREKEGWKEEAKKKEQRLSKMEGELAGLESRVAKG----EDVKILHFKENPTVLFLR-----SETLTARQEAEGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSMMMVGETVDS-SKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGETLEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETST 810
LE L NA +++ ++ Q AL SP +L+ ++ R++ + AL +E K + +L + + + +E R+AKG + K+L NP + + +E L R+E + LK S ++V+ K +QRLKE F+++I +RD YQ TGY + D ++P++ LRS+YAE++ D + FQ+ LE+LET F L + L NS+P FL+G+T LFE T
Sbjct: 513 LETALKNAEDTIQSLQSTQQALPSPALLAKIKRRVAEVEEALGQE-------KAASLHLRTQLEQAQATASLVERRLAKGPVNLDSTKVLQL--NPALSATKQKLETAEMLELRRENDRLK------------------------EIVQNLNPQTPGGPKMPLPTPMKTSASSSHDSVEGLQKMNQRLKEVFREQIAKYRDAVYQCTGYKV----DLKYPELVLRSIYAENEGDEVKFQFNNGELELLETPFVA-GLDQRNMAYLTMCNSIPAFLSGVTLALFEKQT 761
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_004394183.1 (PREDICTED: mitotic spindle assembly checkpoint protein MAD1 isoform X1 [Odobenus rosmarus divergens]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L SMYAE + DCL+F+ G + +++LETAF+ H +R + L R +S+P FL+ +T +LF T+
Sbjct: 614 NQRLKEVFQTKIQEFRKVCYALTGYQIDITTENQY---RLTSMYAEHKADCLIFKATGPSGAKMQLLETAFS-HSVRELIELHLLRQDSIPAFLSALTLDLFSRQTV 716
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_004394184.1 (PREDICTED: mitotic spindle assembly checkpoint protein MAD1 isoform X2 [Odobenus rosmarus divergens]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L SMYAE + DCL+F+ G + +++LETAF+ H +R + L R +S+P FL+ +T +LF T+
Sbjct: 614 NQRLKEVFQTKIQEFRKVCYALTGYQIDITTENQY---RLTSMYAEHKADCLIFKATGPSGAKMQLLETAFS-HSVRELIELHLLRQDSIPAFLSALTLDLFSRQTV 716
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_010329949.1 (PREDICTED: mitotic spindle assembly checkpoint protein MAD1, partial [Saimiri boliviensis boliviensis]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L S+YAE Q DCL+F+ G + +++LET F+ H + + LRR +S+P FL+ +T ELF T+
Sbjct: 544 NQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQY---RLTSLYAEHQGDCLIFKATGPSGSKMQLLETEFS-HTVGELIEAHLRRQDSIPAFLSSLTLELFSRQTV 646
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_012415652.1 (PREDICTED: mitotic spindle assembly checkpoint protein MAD1 isoform X3 [Odobenus rosmarus divergens]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L SMYAE + DCL+F+ G + +++LETAF+ H +R + L R +S+P FL+ +T +LF T+
Sbjct: 543 NQRLKEVFQTKIQEFRKVCYALTGYQIDITTENQY---RLTSMYAEHKADCLIFKATGPSGAKMQLLETAFS-HSVRELIELHLLRQDSIPAFLSALTLDLFSRQTV 645
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_021535825.1 (mitotic spindle assembly checkpoint protein MAD1 isoform X1 [Neomonachus schauinslandi]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L SMYAE + DCL+F+ G + +++LETAF+ H +R + L R +S+P FL+ +T +LF T+
Sbjct: 567 NQRLKEVFQTKIQEFRKVCYALTGYQIDITTENQY---RLTSMYAEHKADCLIFKATGPSGAKMQLLETAFS-HSVRELIELHLLRQDSIPAFLSALTLDLFSRQTV 669
BLAST of NO27G00170 vs. NCBI_GenBank
Match: XP_021535826.1 (mitotic spindle assembly checkpoint protein MAD1 isoform X2 [Neomonachus schauinslandi]) HSP 1 Score: 82.0 bits (201), Expect = 9.200e-12 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 707 HQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGET---LEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETSTM 811
+QRLKE F+ +I FR CY LTGY I ++T+ ++ L SMYAE + DCL+F+ G + +++LETAF+ H +R + L R +S+P FL+ +T +LF T+
Sbjct: 614 NQRLKEVFQTKIQEFRKVCYALTGYQIDITTENQY---RLTSMYAEHKADCLIFKATGPSGAKMQLLETAFS-HSVRELIELHLLRQDSIPAFLSALTLDLFSRQTV 716 The following BLAST results are available for this feature:
BLAST of NO27G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00170 ID=NO27G00170|Name=NO27G00170|organism=Nannochloropsis oceanica|type=gene|length=6540bpback to top protein sequence of NO27G00170.1 >NO27G00170.1-protein ID=NO27G00170.1-protein|Name=NO27G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=812bpback to top Synonyms
Publications
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