NO27G00170.1, NO27G00170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00170.1
Unique Name	NO27G00170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2864
Alignment location	chr27:54840..61379 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:54840..61379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00170.1 vs.
Match: XP_002999102.1 (mitotic spindle assembly checkpoint protein MAD1, putative [Phytophthora infestans T30-4]; EEY69248.1 mitotic spindle assembly checkpoint protein MAD1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 108.2 bits (269), Expect = 1.200e-19
Identity = 157/682 (23.02%), Postives = 315/682 (46.19%), Query Frame = 0

Query:  144 KRLERQLEEERLLRASDAERARSEIEAQAHALEKAARQIKFLMGEEEVARAELRDSVSRNAQDRQRLHEQLRDRGRQIDALEAQLRDALSQASRPSSLPSSSSSSSSSRLEEMQAALRKANEELTGKKALEMQVESLQRQLTDTQRSLVLLEAKEDARP--------DNDAMLKKLMAQSVESERSLKRVRGEMERLTAERANTALLRERIEDLEHGKARLEQRLSAFQEKEGARAVVEQEQEEEEKEWELLLRQVGASTEESEKRGGGGGGEGGGGGGRRAARVFALIRRLQEKEALAYAQVGEKEVKCAALERSLQASQASVAEQTVTLASLQEEVTLLQERVRASDPYTAALQRENATYKNLLDRSYEHKSRQGEEGGKEGGKEGGEE--KQRIVYLEEMLANALSSLKEMEGKQAALASPLILSNLQARLSSLTSALEREEREKEGWKEEAKKKEQRLSKMEGELAGLESRVAKGE----DVKILHFKENPTVLFLRSETLTARQEAEGLKKQVAALQQQQQQLQQQQQQHMSMSSASSLGGDESGGGGGGGGGGGLGVSMMMVGETVDS-SKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMYAESQEDCLLFQWRGE-TLEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGITQELFETST 810
            + L+R+++  ++   ++++R +  ++ +   L++  RQ+KF + EEE  R EL++ ++ ++ ++ +L +++ +   Q++ +E +L +   +A   +S   S S  S  +++ +Q  L  A +  +     E  +   + +L ++Q     LEA+  A          +N   +++L  Q ++ + + ++++ E+  L     ++++L+E++        + E+R S   ++  A  +VE+  ++    +E ++++  +     + +             R A  V  L +  Q    +   Q    E++   LE+  +  Q+ +   +   A L+ ++T  QE++  S+   A L++ N     +L           E  GK+   +   E   +R+  LE  L  +   LK ME  Q ++A+P  +   +AR+  L  AL          K+E     + L K E ELA  E R+ +GE      KI+H   NPT   L+S+  ++  + E L+++  AL+ +  +L   +   +S SSAS    D+              ++     +TV+   K +QRLK+ F  +I  +R+  Y LTGY + L        + LRS+YAE  +D LL +     +LE+L++ F   ++   +   L    S P FL+ +T  LFE  T
Sbjct:   97 EELKREVQMLKIQLETNSQRHQIALKERDVQLDQLRRQLKFAVTEEEETRTELKNVINEHSSEKLQLEKKVVELEAQLELVEGKLNEWKEKALEATSQLRSKSRQSEMKIQLLQYELEAAQDSSSTSSQSEDNIFESKIRLLESQLKEKSLEAEHAASSLLGAQETLENAKEVRELNEQIMQLQSTERKLKAELVDLIEASRSSSILQEKLYQTTQKLQQSEERNSQALKRVEAAMLVEEAHKQFYDYFEPIVKEANSGVSLEDLKN------------RPATAVIDLYKARQNAFEILLEQKSNMEIQRRRLEKQCEKLQSDLITSSNKCAKLEIQLTETQEKMNGSNDVVAHLRKLNTELIEIL-----------ETYGKDPDDQEANELSTKRVALLESSLKQSQELLKGMESTQKSMATPAAVKKYEARIERLEKALADA-------KQENGNLTKHLEKAEMELAVFEKRLGRGEFNVETTKIVHLAVNPTRELLQSKAKSS--DIEKLRQENEALRARLSKLTDGEDTEVSRSSASCSNQDK--------------LTTTTSYDTVEGLKKLNQRLKQVFGDQIRQYREAVYLLTGYKVDLRKSNGMELLRLRSVYAEHDDDELLVRMEANGSLELLDSEFCS-QINQRVFAYLTTCRSFPAFLSTLTLHLFEKQT 731

The following BLAST results are available for this feature:

BLAST of NO27G00170.1 vs.

BLAST of NO27G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002999102.1	1.200e-19	23.02	mitotic spindle assembly checkpoint protein MAD1, ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00170	NO27G00170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00170.1	NO27G00170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00170.1.cds1	NO27G00170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds2	NO27G00170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds3	NO27G00170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds4	NO27G00170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds5	NO27G00170.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds6	NO27G00170.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds7	NO27G00170.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds8	NO27G00170.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds9	NO27G00170.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds10	NO27G00170.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds11	NO27G00170.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds12	NO27G00170.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds13	NO27G00170.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds14	NO27G00170.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds15	NO27G00170.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds16	NO27G00170.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds17	NO27G00170.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds18	NO27G00170.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds19	NO27G00170.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds20	NO27G00170.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds21	NO27G00170.1.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds22	NO27G00170.1.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00170.1.cds23	NO27G00170.1.cds23	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:54840..61379+
coding sequence from alignment at chr27:54840..61379+

mRNA sequence

>NO27G00170.1 ID=NO27G00170.1|Name=NO27G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp
ACAGACACTCGGACGCACAGCGGTGCAATGCAAAGACATTAGAAGCGCAA
GCAAGCAAGGCACATTTAGCGAGTCAAACATTGGAGTGACATTCCATTAA
TTTGCTCCTCGTCGGGCGTCATGTCCTTCTCCTCTGGCGCGGTGGCTTGG
CAGGCCTTGGAAGAAATCCGGCATGACATCGAGGGCTACATGCGTACAGT
CACCTCTTCTGCGTCATCGTCCTCTTTTTCTGTGCGGTGCGCTGGCGATG
CCAACGAGGCGGCGGCTTTATCAGCCAACGAGGCGGCGGCCTTGCGCCAG
CGCGTGGCCCGTCTCGAGCACGAATTGCAAGAAGAGAAGAAGAAGTCTTC
TTCCTCCCCCCCTCCTTCCTCCTCGGCGACGCCGACAGTGTCTGTCCTGG
CCTTGGCCGGCAGCAAACGACCGCGCGTCGAGGACGAGGACGAGGACGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGCGTCATCCACCTCGCT
TTCCCCCTCTTTTTCCGGGCTGATGAAGGTGGAAGACGAGGCCCGGGTCA
AGAGACTAGAGCGACAGCTGGAGGAGGAGAGGCTGTTGCGGGCCTCGGAC
GCCGAGCGTGCCCGTAGCGAGATAGAGGCCCAGGCACACGCCCTGGAGAA
GGCTGCGAGGCAGATAAAATTCCTGATGGGGGAGGAGGAGGTGGCCCGCG
CCGAGCTTCGTGATTCCGTTTCCCGCAACGCCCAAGATCGCCAACGGCTG
CACGAGCAATTACGAGACCGAGGCCGACAGATCGACGCATTGGAAGCTCA
GCTCCGCGATGCCCTCAGCCAAGCGTCACGCCCGTCTTCGCTCCCTTCCT
CCTCCTCCTCCTCCTCCTCCTCGCGACTGGAGGAAATGCAAGCGGCCCTT
CGGAAGGCCAACGAAGAACTGACAGGGAAAAAAGCACTGGAAATGCAGGT
TGAATCCCTCCAACGGCAGCTAACGGACACTCAACGGTCACTCGTCCTCT
TGGAGGCCAAGGAAGACGCTCGCCCGGATAACGATGCAATGTTAAAAAAA
CTCATGGCCCAGTCTGTGGAAAGCGAAAGGTCCCTCAAGAGGGTGAGGGG
CGAGATGGAGAGGCTGACGGCCGAGCGCGCCAATACCGCCCTCCTCCGCG
AACGCATCGAGGACCTCGAACACGGCAAGGCCCGGCTGGAGCAGCGGCTG
TCTGCCTTCCAGGAGAAGGAGGGGGCCCGCGCCGTTGTGGAGCAGGAGCA
GGAGGAGGAGGAGAAGGAGTGGGAGTTGTTGTTACGGCAGGTGGGGGCCT
CGACGGAGGAAAGTGAAAAAAGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
GGAGGAGGAGGACGACGAGCGGCCCGTGTTTTTGCCCTCATCCGGCGGCT
CCAAGAGAAGGAGGCTCTGGCCTACGCGCAGGTCGGGGAAAAGGAGGTCA
AATGCGCTGCCCTCGAGCGGTCCCTCCAAGCGTCCCAGGCCTCTGTCGCC
GAGCAAACCGTCACGCTGGCTTCCCTCCAAGAAGAGGTCACCCTCTTGCA
GGAGCGTGTGCGGGCTTCAGATCCTTACACGGCGGCGTTGCAGCGAGAGA
ATGCCACGTACAAGAATCTCCTCGACAGGTCCTATGAGCACAAGAGCCGG
CAGGGCGAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGAGGAGAA
GCAGCGGATCGTTTATTTGGAAGAAATGCTCGCCAACGCGCTCTCTTCAC
TCAAGGAGATGGAGGGCAAGCAGGCGGCGCTGGCGTCTCCCCTCATTCTC
TCCAATCTGCAGGCCCGTCTCTCCTCCCTCACCTCCGCACTCGAGAGGGA
GGAGAGGGAGAAGGAGGGATGGAAGGAGGAGGCGAAGAAAAAGGAGCAGA
GGCTCAGCAAAATGGAGGGCGAGCTGGCGGGGCTTGAGTCGAGGGTGGCC
AAGGGGGAGGACGTAAAGATACTCCACTTCAAGGAGAATCCCACAGTGCT
CTTCCTCCGCAGCGAAACCCTGACTGCTCGGCAGGAGGCGGAGGGTCTCA
AGAAACAAGTCGCAGCTCTCCAGCAGCAGCAGCAGCAGCTGCAGCAGCAA
CAGCAGCAGCACATGTCGATGTCCTCTGCCTCCTCGCTGGGCGGGGACGA
GAGTGGGGGAGGGGGAGGAGGAGGAGGAGGGGGAGGGCTTGGAGTGAGCA
TGATGATGGTGGGCGAGACAGTGGACTCGAGCAAGTACCATCAGCGCCTC
AAGGAGGCCTTCAAGCAGCGGATCAACCTCTTCCGCGACTGCTGCTACCA
GCTGACGGGCTACATGATCACCCTTTCCACAGACCGAGAGTTTCCCCAAG
TGACCCTCCGCTCCATGTACGCCGAGAGCCAGGAGGATTGCCTCCTCTTC
CAATGGCGGGGCGAGACGTTGGAAATGCTCGAAACGGCCTTTACCAAACA
CAAGCTCCGCGCATCCCTTTTGGACACCCTCCGCCGCTACAACTCCCTCC
CTCTTTTTCTGGCAGGCATAACACAGGAGCTGTTTGAGACAAGCACGATG
CACTGATGAAGTCCAGTGATGGGGAGGGAGGAGAGAGGGAGGGTTGCTGA
TTGGCACGCGATGATGACATTTTTTGGGTGCCACGAGGAGGGAGAGGAGG
GGGAGGGGGCGGAGGAGGAGAAGGAAAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGTCGGCAAGAGATGACAGCCAAATGAGTAGAGACGATGTTTCTC
CGTACACTGTGAAGGCTTACTACTCTAATTGACCGGAATCCACGTCATGA
GTGGGAAGAGCGATAAGAATAAGATCATGGATGAAAGTAATGTTGGAAAG
GACGTGCTACGTGC

protein sequence of NO27G00170.1

>NO27G00170.1-protein ID=NO27G00170.1-protein|Name=NO27G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=812bp
MSFSSGAVAWQALEEIRHDIEGYMRTVTSSASSSSFSVRCAGDANEAAAL
SANEAAALRQRVARLEHELQEEKKKSSSSPPPSSSATPTVSVLALAGSKR
PRVEDEDEDEGGREGGREGGKASSTSLSPSFSGLMKVEDEARVKRLERQL
EEERLLRASDAERARSEIEAQAHALEKAARQIKFLMGEEEVARAELRDSV
SRNAQDRQRLHEQLRDRGRQIDALEAQLRDALSQASRPSSLPSSSSSSSS
SRLEEMQAALRKANEELTGKKALEMQVESLQRQLTDTQRSLVLLEAKEDA
RPDNDAMLKKLMAQSVESERSLKRVRGEMERLTAERANTALLRERIEDLE
HGKARLEQRLSAFQEKEGARAVVEQEQEEEEKEWELLLRQVGASTEESEK
RGGGGGGEGGGGGGRRAARVFALIRRLQEKEALAYAQVGEKEVKCAALER
SLQASQASVAEQTVTLASLQEEVTLLQERVRASDPYTAALQRENATYKNL
LDRSYEHKSRQGEEGGKEGGKEGGEEKQRIVYLEEMLANALSSLKEMEGK
QAALASPLILSNLQARLSSLTSALEREEREKEGWKEEAKKKEQRLSKMEG
ELAGLESRVAKGEDVKILHFKENPTVLFLRSETLTARQEAEGLKKQVAAL
QQQQQQLQQQQQQHMSMSSASSLGGDESGGGGGGGGGGGLGVSMMMVGET
VDSSKYHQRLKEAFKQRINLFRDCCYQLTGYMITLSTDREFPQVTLRSMY
AESQEDCLLFQWRGETLEMLETAFTKHKLRASLLDTLRRYNSLPLFLAGI
TQELFETSTMH*

mRNA from alignment at chr27:54840..61379+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00170.1 ID=NO27G00170.1|Name=NO27G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=6540bp|location=Sequence derived from alignment at chr27:54840..61379+ (Nannochloropsis oceanica)
ACAGACACTCGGACGCACAGCGGTGCAATGCAAAGACATTAGAAGCGCAA
GCAAGCAAGGCACATTTAGCGAGTCAAACATTGGAGTGACATTCCATTAA
TTTGCTCCTCGTCGGGCGTCATGTCCTTCTCCTCTGGCGCGGTGGCTTGG
CAGGTACGTAAGCTTCATTGTGTGTAGGGGGGAATGCGCTGTATCGCTGG
ACTCCTCCTCCCCTCCACCGGACCGTTCTGTCACTGTCTTTACTTCGACT
TGCCTGGCTCCTATACTAAGAAGCTGCCATCGTATCTCATCCCCCTTCCC
TCTACCCCGCCCTCCTCTTTCATATGTTCTCGCAGGCCTTGGAAGAAATC
CGGCATGACATCGAGGGCTACATGCGTACAGTCACCTCTTCTGCGTCATC
GTCCTCTTTTTCTGTGCGGTGCGCTGGCGATGGTGAGCGGAGGGAGGGAG
GGAGGAAAGAAGGGGACGAGGGAGGGAGGGGGGCTCATGGGGAGTGTAAG
GATGAAGAATGCCAGGAGATATTTGGCTGGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGAAATTTTAGGCGATCTTTATGCTTGGCACACGAAATGCT
CACCTTCCTGCCCATCCTACCCTTCCTCCTTCCCCCCTTCCCTCCCTCCC
TCCTTATCAGCCAACGAGGCGGCGGCTTTATCAGCCAACGAGGCGGCGGC
CTTGCGCCAGCGCGTGGCCCGTCTCGAGCACGAATTGCAAGAAGAGAAGA
AGAAGGTTAGAATGAGAGGAAGGGAGGGAGGGAGGAAAGGAGGAGGAAGG
AGGGAAGGAGGAGGAAGGAGGTGACAGGAGCAGCGGCAGCAGCAGCAGCA
GCTGTAGAGCAGTTTGAACCGTCGCTCAGCATTTTGCCTCCTTTTCCCTA
TTCCCCCCCTCAATAAAAACAGTCTTCTTCCTCCCCCCCTCCTTCCTCCT
CGGCGACGCCGACAGTGTCTGTCCTGGCCTTGGCCGGCAGCAAACGACCG
CGCGTCGAGGACGAGGACGAGGACGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGCGTCATCCACCTCGCTTTCCCCCTCTTTTTCCGGGCTGA
TGAAGGTGGAAGACGAGGCCCGGGTCAAGAGACTAGAGCGACAGCTGGAG
GAGGAGAGGCTGTTGCGGTGAGGGAGGGAGGGAGGGAGGGAGGGGAGGTT
GAAGAGGATAGTGGAGGGAGGAAAAGCGGGAGGGAGGGAGGGAGGGGCCC
ATGCTCTCTCTTGGTAGAGCCGAGAAACACCAATCTCACACTCCTTGCCT
TCCTCCCTAAAACAGGGCCTCGGACGCCGAGCGTGCCCGTAGCGAGATAG
AGGCCCAGGCACACGCCCTGGAGAAGGCTGCGAGGCAGATAAAATTCCTG
ATGGGGGAGGAGGAGGTGGGGGGGGGGGAGGAGGGAGCGAGGGAGCGAGG
GAGCGAGGGAGGGAGGCTGACATCTTGGAGCTGGAAAAACGTGTGCCTGA
AACATATTGAAGGTATCTTCTTCTTTCCCTCCCTCCCTCTCTCCCTCCCT
TCCCAGGTGGCCCGCGCCGAGCTTCGTGATTCCGTTTCCCGCAACGCCCA
AGATCGCCAACGGCTGCACGTAAGCCTCTCCCTCCCTCCCTCCCTCCCTC
ACCCCCTTCCTCCCTCACTCCTTCCTCCTTCATTTTTAAACTCAATCTTT
CCTCCCTCCCTCCCTCCCTCCCTCTTTCGCCCTCTCAGGAGCAATTACGA
GACCGAGGCCGACAGATCGACGCATTGGAAGCTCAGGTACCTCCCTCCCT
CCCTCCCTCACTCCCTCCTTTCTTCCTTCCTTCTCTCGCCCTCTCGTTCT
CTCCTCCCTTCCCATCCACCCCACCCACCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCTCCCTCCCTCCCTCCCTCCCTTCCAAA
GCTCCGCGATGCCCTCAGCCAAGCGTCACGCCCGTCTTCGCTCCCTTCCT
CCTCCTCCTCCTCCTCCTCCTCGCGACTGGAGGAAATGCAAGCGGCCCTT
CGGAAGGCCAACGAAGAACTGACAGGGAAAAAAGCACTGGAAATGCAGGT
TAGAAAGGGAGGAATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGGACTTGGCAAAGGATTGTCTTTTTTTCCCTAATGGTACTCAC
TCACTCATTCGTCTACGCCGCACATCAACCTCACTCCTTCCCTCCCTCCC
TCCCTCCCTCCCTCATTCCAGGTTGAATCCCTCCAACGGCAGCTAACGGA
CACTCAACGGTCACTCGTCCTCTTGGAGGCCAAGGAAGACGCTCGCCCGG
ATAACGATGCAATGTTAAAAAAACTCATGGCCCAGGTCCGCAAGCCCTCC
CTCCCTCCCTCACTCACTCACTCACTCACTCCCTCCCTCGGAAACAATTT
CGACTCTCATTCTCCTCCCTCCCTCCCTCCCTTGTCAGTCTGTGGAAAGC
GAAAGGTCCCTCAAGAGGGTGAGGGGCGAGATGGAGAGGCTGACGGCCGA
GCGCGCCAATACCGCCCTCCTCCGCGAACGCATCGAGGCACGTGCTTTCT
CCCTCCCTCCCTCCCTCCCTCTCTTCCTGGCTTCCTGCCCTCTTTGCTCC
CCTCCCTTCTTGTCTTTGGGATTAGGGCGTTCTTTTAGTAGCGCATTCAT
CGCCCCTCCCTCCCTCCCTCCCTCCCTACCCCAGGACCTCGAACACGGCA
AGGCCCGGCTGGAGCAGCGGCTGTCTGCCTTCCAGGAGAAGGAGGGGGCC
CGCGCCGTTGTGGAGCAGGAGCAGGAGGAGGAGGAGAAGGAGTGGGAGTT
GTTGTTGTACGTAAAAAGAGGGAGGGAGGGAGGGAGGGAGGGGGGAAGGG
AGGGTGAAGGAGTCCAATTAGTCGTCCGTGAAAAAGAGTCCGGAATAAGA
ATGTGGTGATTGGTAGTATAGTACTATTGCATCATTATTATTACAATGTT
ATTTGATATTATTGTTATTTTCATCTTTTTATTTGGTGTTGATTCCCTCT
CTTCTATGTACTTGTCCTACATACACAGACGGCAGGTGGGGGCCTCGACG
GAGGAAAGTGAAAAAAGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
AGGAGGACGACGAGCGGCCCGTGTTTTTGCGTAAGTTTCCCATCCATCCC
TTCCTCCCTCACTCCCTCTCTCCCTCTCCCCCTCTTTCCTTTCATTCCTA
TATCCTTCCCTCCCTCCTTGCATTCCTTCGTCCCCCCCTCCCTCTTTCCG
CTCCCAAGAACTGACCCCTCCCTCCCTCCCTCCCTCCCCCTAGCCTCATC
CGGCGGCTCCAAGAGAAGGAGGCTCTGGCCTACGCGCAGGTCGGGGAAAA
GGAGGTCAAATGCGCTGCCCTCGAGCGGGTACGTCCTCCCTCCCTCCCTC
CCTTCCTCCCTCCCTTCGCATGTCCCTCCTTTCCTATTTCCCATCCCATC
TCTTGTCTTCTTTTTTTTCACTTCTCTTCCTTAATCCTTGCATGTGGGTT
TGACCGACCATCGTCCCTCTCCCCCTCCCTCCCTCCCTCCCTCTCTCCCT
CCCTCAGTCCCTCCAAGCGTCCCAGGCCTCTGTCGCCGAGCAAACCGTCA
CGCTGGCTTCCCTCCAAGAAGAGGTCACCCTCTTGCAGGTACCGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTGCT
CGTCCCTTCTTTCTTCACACCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TCTTTTTCCTCAGGAGCGTGTGCGGGCTTCAGATCCTTACACGGCGGCGT
TGCAGCGAGAGAATGCCACGTACAAGAATCTCCTCGACAGGTCCTATGAG
CACAAGAGCCGGCAGGGCGAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGG
AGGGGAGGAGGTGAGGGAAGAGGGCGGAGGGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGAGGGAATGAGATTCTCATTTGGCTGACTTGAGATCGAGTGA
GCTTTGCACTCGGTCCTTCCACCTTCCTTATGCCCCCCTTTTCCCCCCTC
CTTCCCTCCCCCCCTCCCTCTTCAGAAGCAGCGGATCGTTTATTTGGAAG
AAATGCTCGCCAACGCGCTCTCTTCACTCAAGGAGGTGAGAGAAGGAGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGGAAGAAGAAGAAGAGGAA
GGAGGGAAGGAGGGAGGGAGGGAGGAAGGGAAGGAAGGAAGACGAGTAGG
GCTGGCGTTGGATTCTTCTTCTGTTCAAGAATTTTTCATTTTTCTGTCTC
TCACATGGAATTGTTTTTCTCCCCTTCCTCCCCCTTTCCCTCCCTCCCTC
CCCCCCTCCCTCCCTAGATGGAGGGCAAGCAGGCGGCGCTGGCGTCTCCC
CTCATTCTCTCCAATCTGCAGGCCCGTCTCTCCTCCCTCACCTCCGCACT
CGAGAGGGAGGAGAGGGAGAAGGAGGGATGGAAGGAGGAGGCGAAGAAAA
AGGAGCAGAGGCTCAGGTAGGGAAGGACGGAAGCGGGAAGGATAAAGAGG
GAGGGAGAGGCTGTCCTATCAATCCCTTGCTTTACACTCCTCTCCTCCCT
CCCTCCCTCCCTCCTTCCCTCTCTTCCTCTTTTGTCCTCATGTCATTTCA
TTTTCCTTATTCCTGCCCCCCCTCCCTCCCCCTAAGCAAAATGGAGGGCG
AGCTGGCGGGGCTTGAGTCGAGGGTGGCCAAGGGGGAGGACGTAAAGGTG
AAGGAGGGAGGGAGGGAGGGAGGGAGGGAAGTGAAACAGAGGGAGAGATG
GAGCGAGGGAAGAGAGAGGGAAGGAAAGAGGTAGGGAGAAAGGGAGTTAA
ATTACTGGCCTCAGTCACTGTTCTCATTTACCAGCCATTTATTTACCCCT
CATTCCCTCCCTCCCTCCCTCCCTCCCTCTTTAGATACTCCACTTCAAGG
AGAATCCCACAGTGCTCTTCCTCCGCAGCGAAACCCTGACTGCTCGGCAG
GAGGCGGAGGGTCTCAAGGTACGTCTGCTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAACCTCT
GGCTTGGTAGGGAGGTTTCGGCCAACTCCCCCCCACCCTCCCTCCCTCCC
TTATTCCCTCCCTCCCTCCCTTCCTCACCCACCCTGGCAGAAACAAGTCG
CAGCTCTCCAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAGCAGCAC
ATGTCGATGTCCTCTGCCTCCTCGCTGGGCGGGGACGAGAGTGGGGGAGG
GGGAGGAGGAGGAGGAGGGGGAGGGCTTGGAGTGAGCATGATGATGGTGG
GCGAGACAGGTAGGTTTGAGGAAAGAAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGAAAGGGACAGACGGAAGGTTGTTGTGATCTCCACTTGGAT
GCGCGCTCGACCACAAACTCTTCCCTCTTTTCCTCCCTCCCTCCCTCCCT
CCAGTGGACTCGAGCAAGTACCATCAGCGCCTCAAGGAGGCCTTCAAGCA
GCGGATCAACCTCTTCCGCGACTGCTGCTACCAGCTGACGGGCTACATGA
TCACCCTTTCCACAGACCGAGAGGTACTTGTCTTCCCTCCCTCCCTCCCT
CCTTTCCCTAAGGTTGCACGGTTACTCTCGTGACAGATCGAGAGGGACGT
GCGCTCCTTCCCTCCCTCGCTCCCTCTCTCCCTCCCTCCTTTCAGTTTCT
ATATTCTGCCGGGAATCAAGAAGATTGCTTCCTCCCCATCCTCCCTCCCC
CCCTTCCTCCCTCCCTCCCTCTCCCTCTCCAGTTTCCCCAAGTGACCCTC
CGCTCCATGTACGCCGAGAGCCAGGAGGATTGCCTCCTCTTCCAATGGCG
GGGCGAGACGTTGGAAATGCTCGAAACGGCCTTTACCAAACACAAGCTCC
GCGCAGTAGGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTGCTCTCATC
TCCATCTACTCTCCTAGTTGCTCGGCCGCGTCAACTCACCCTCCTTCCTT
CCGTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCACAGTCCCTTTTGGA
CACCCTCCGCCGCTACAACTCCCTCCCTCTTTTTCTGGCAGGCATAACAC
AGGAGCTGTTTGAGACAAGCACGATGCACTGATGAAGTCCAGTGATGGGG
AGGGAGGAGAGAGGGAGGGTTGCTGATTGGCACGCGATGATGACATTTTT
TGGGTGCCACGAGGAGGGAGAGGAGGGGGAGGGGGCGGAGGAGGAGAAGG
AAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCGGCAAGAGATGACAG
CCAAATGAGTAGAGACGATGTTTCTCCGTACACTGTGAAGGCTTACTACT
CTAATTGACCGGAATCCACGTCATGAGTGGGAAGAGCGATAAGAATAAGA
TCATGGATGAAAGTAATGTTGGAAAGGACGTGCTACGTGC

Coding sequence (CDS) from alignment at chr27:54840..61379+

>NO27G00170.1 ID=NO27G00170.1|Name=NO27G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=2436bp|location=Sequence derived from alignment at chr27:54840..61379+ (Nannochloropsis oceanica)
ATGTCCTTCTCCTCTGGCGCGGTGGCTTGGCAGGCCTTGGAAGAAATCCG
GCATGACATCGAGGGCTACATGCGTACAGTCACCTCTTCTGCGTCATCGT
CCTCTTTTTCTGTGCGGTGCGCTGGCGATGCCAACGAGGCGGCGGCTTTA
TCAGCCAACGAGGCGGCGGCCTTGCGCCAGCGCGTGGCCCGTCTCGAGCA
CGAATTGCAAGAAGAGAAGAAGAAGTCTTCTTCCTCCCCCCCTCCTTCCT
CCTCGGCGACGCCGACAGTGTCTGTCCTGGCCTTGGCCGGCAGCAAACGA
CCGCGCGTCGAGGACGAGGACGAGGACGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGCGTCATCCACCTCGCTTTCCCCCTCTTTTTCCGGGC
TGATGAAGGTGGAAGACGAGGCCCGGGTCAAGAGACTAGAGCGACAGCTG
GAGGAGGAGAGGCTGTTGCGGGCCTCGGACGCCGAGCGTGCCCGTAGCGA
GATAGAGGCCCAGGCACACGCCCTGGAGAAGGCTGCGAGGCAGATAAAAT
TCCTGATGGGGGAGGAGGAGGTGGCCCGCGCCGAGCTTCGTGATTCCGTT
TCCCGCAACGCCCAAGATCGCCAACGGCTGCACGAGCAATTACGAGACCG
AGGCCGACAGATCGACGCATTGGAAGCTCAGCTCCGCGATGCCCTCAGCC
AAGCGTCACGCCCGTCTTCGCTCCCTTCCTCCTCCTCCTCCTCCTCCTCC
TCGCGACTGGAGGAAATGCAAGCGGCCCTTCGGAAGGCCAACGAAGAACT
GACAGGGAAAAAAGCACTGGAAATGCAGGTTGAATCCCTCCAACGGCAGC
TAACGGACACTCAACGGTCACTCGTCCTCTTGGAGGCCAAGGAAGACGCT
CGCCCGGATAACGATGCAATGTTAAAAAAACTCATGGCCCAGTCTGTGGA
AAGCGAAAGGTCCCTCAAGAGGGTGAGGGGCGAGATGGAGAGGCTGACGG
CCGAGCGCGCCAATACCGCCCTCCTCCGCGAACGCATCGAGGACCTCGAA
CACGGCAAGGCCCGGCTGGAGCAGCGGCTGTCTGCCTTCCAGGAGAAGGA
GGGGGCCCGCGCCGTTGTGGAGCAGGAGCAGGAGGAGGAGGAGAAGGAGT
GGGAGTTGTTGTTACGGCAGGTGGGGGCCTCGACGGAGGAAAGTGAAAAA
AGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGACGACGAGC
GGCCCGTGTTTTTGCCCTCATCCGGCGGCTCCAAGAGAAGGAGGCTCTGG
CCTACGCGCAGGTCGGGGAAAAGGAGGTCAAATGCGCTGCCCTCGAGCGG
TCCCTCCAAGCGTCCCAGGCCTCTGTCGCCGAGCAAACCGTCACGCTGGC
TTCCCTCCAAGAAGAGGTCACCCTCTTGCAGGAGCGTGTGCGGGCTTCAG
ATCCTTACACGGCGGCGTTGCAGCGAGAGAATGCCACGTACAAGAATCTC
CTCGACAGGTCCTATGAGCACAAGAGCCGGCAGGGCGAGGAGGGAGGGAA
GGAGGGAGGGAAGGAGGGAGGGGAGGAGAAGCAGCGGATCGTTTATTTGG
AAGAAATGCTCGCCAACGCGCTCTCTTCACTCAAGGAGATGGAGGGCAAG
CAGGCGGCGCTGGCGTCTCCCCTCATTCTCTCCAATCTGCAGGCCCGTCT
CTCCTCCCTCACCTCCGCACTCGAGAGGGAGGAGAGGGAGAAGGAGGGAT
GGAAGGAGGAGGCGAAGAAAAAGGAGCAGAGGCTCAGCAAAATGGAGGGC
GAGCTGGCGGGGCTTGAGTCGAGGGTGGCCAAGGGGGAGGACGTAAAGAT
ACTCCACTTCAAGGAGAATCCCACAGTGCTCTTCCTCCGCAGCGAAACCC
TGACTGCTCGGCAGGAGGCGGAGGGTCTCAAGAAACAAGTCGCAGCTCTC
CAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAGCAGCACATGTCGAT
GTCCTCTGCCTCCTCGCTGGGCGGGGACGAGAGTGGGGGAGGGGGAGGAG
GAGGAGGAGGGGGAGGGCTTGGAGTGAGCATGATGATGGTGGGCGAGACA
GTGGACTCGAGCAAGTACCATCAGCGCCTCAAGGAGGCCTTCAAGCAGCG
GATCAACCTCTTCCGCGACTGCTGCTACCAGCTGACGGGCTACATGATCA
CCCTTTCCACAGACCGAGAGTTTCCCCAAGTGACCCTCCGCTCCATGTAC
GCCGAGAGCCAGGAGGATTGCCTCCTCTTCCAATGGCGGGGCGAGACGTT
GGAAATGCTCGAAACGGCCTTTACCAAACACAAGCTCCGCGCATCCCTTT
TGGACACCCTCCGCCGCTACAACTCCCTCCCTCTTTTTCTGGCAGGCATA
ACACAGGAGCTGTTTGAGACAAGCACGATGCACTGA

Synonyms

Publications