NO27G00140, NO27G00140 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00140 vs. NCBI_GenBank
Match: CDH50344.1 (hypothetical protein RO3G_06958 [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10 Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 0
Query: 28 PVWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
PV LG+ I + + VD Y TKIGG P+ L L P CG+C+ P+YL+ Q Y P+A RV+Y++ CN+ C KEGSF VLRS
Sbjct: 14 PVLLGLPDGAIES----SDDVDAYITKIGGVPVWLDSEKL-PSPKVLECGNCRRPMYLIFQGYVPLADSPYHRVIYVWGCNQRLCMRKEGSFSVLRS 105
BLAST of NO27G00140 vs. NCBI_GenBank
Match: OBZ86563.1 (putative programmed cell death protein 2, partial [Choanephora cucurbitarum]) HSP 1 Score: 75.1 bits (183), Expect = 3.500e-10 Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0
Query: 26 QGPVWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
+ PV LG+ EI N D Y TK+GG P+ L + S P + C C+ P+YL+ Q YAP+ RVLY++ CNR C KEGSF VLRS
Sbjct: 21 EAPVLLGLPDGEIEVDN------DAYITKLGGLPLWL-EPSKPPSSQLCHCKVCRKPMYLIFQSYAPLPDSPYHRVLYVWGCNRRACMRKEGSFSVLRS 112
BLAST of NO27G00140 vs. NCBI_GenBank
Match: EPB89241.1 (hypothetical protein HMPREF1544_03981 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 71.2 bits (173), Expect = 5.000e-9 Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
V LG+ +I N D Y TK+GG P+ L + S P + C C P+YL+ Q Y P+ RVLY++ACNR C KEGSF V+RS
Sbjct: 14 VLLGIPDGDIEVDN------DAYITKLGGLPVWL-EPSKPPSSKVCECRICHNPMYLIFQSYVPLQDSPYHRVLYVWACNRRSCMRKEGSFSVIRS 102
BLAST of NO27G00140 vs. NCBI_GenBank
Match: GAN03817.1 (conserved hypothetical protein [Mucor ambiguus]) HSP 1 Score: 71.2 bits (173), Expect = 5.000e-9 Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
V LG+ +I N D Y TK+GG P+ L + S P + C C +P+YL+ Q Y P+ RVLY++ACNR C KEGSF V+RS
Sbjct: 14 VLLGIPDGDIEVDN------DAYITKLGGLPVWL-EPSKPPSSKVCECRICHSPMYLIFQSYVPLQESPYHRVLYVWACNRRACMRKEGSFSVVRS 102
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_008862793.1 (hypothetical protein H310_01464 [Aphanomyces invadans] >ETW08988.1 hypothetical protein H310_01464 [Aphanomyces invadans]) HSP 1 Score: 70.5 bits (171), Expect = 8.500e-9 Identity = 40/100 (40.00%), Postives = 49/100 (49.00%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPI------SLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLYIFACNRGPCQEKEGSFCVLRSQ 123
V LG+ K++R + YT K+GG P S+P LH C C LYL+AQ+YAPV TPR LYIF CN C S+ V R Q
Sbjct: 7 VLLGIPAKDVRV-----DETCPYTAKLGGIPAWFNAANSIPDSQLH-------CPQCHNSLYLVAQIYAPVTTPRSLYIFGCNSAKCVTVPNSWRVFRFQ 94
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_008862794.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW08989.1 hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 70.5 bits (171), Expect = 8.500e-9 Identity = 40/100 (40.00%), Postives = 49/100 (49.00%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPI------SLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLYIFACNRGPCQEKEGSFCVLRSQ 123
V LG+ K++R + YT K+GG P S+P LH C C LYL+AQ+YAPV TPR LYIF CN C S+ V R Q
Sbjct: 7 VLLGIPAKDVRV-----DETCPYTAKLGGIPAWFNAANSIPDSQLH-------CPQCHNSLYLVAQIYAPVTTPRSLYIFGCNSAKCVTVPNSWRVFRFQ 94
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_015071645.1 (PREDICTED: probable 20S rRNA accumulation protein 4 [Solanum pennellii]) HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 27 GPVWLGVQGKEIRTVNGKEEAVDGYTTKIGG---WPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVA------TPRVLYIFACNRGPCQEKEGSFCVLRSQEAVTA 128
G V+LG+ G EA D YTTKIGG WPI LP S+ D +C C++ L LLAQVYAP+A RV+Y+F C C S+ LR Q++V +
Sbjct: 2 GGVFLGMPG---TWAGNMHEAADHYTTKIGGLPDWPIPLPSASV--DLF--KCSSCRSDLSLLAQVYAPIAHKSLNIEERVIYVFCCLMPKCGSSTVSWRALRIQKSVNS 104
BLAST of NO27G00140 vs. NCBI_GenBank
Match: ORZ16591.1 (programmed cell death protein 2 [Absidia repens]) HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8 Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
V LG+ EI KE+ D Y TK+GG PI L P +C C +YLL Q Y P+ RV+YIFACNR C KEGSF ++RS
Sbjct: 20 VLLGLPDGEI----PKEDDTDPYITKLGGLPIWLTNDKSPPSDYC-QCRICGQWMYLLCQTYVPLPDSVYHRVIYIFACNRRSCMRKEGSFSIVRS 110
BLAST of NO27G00140 vs. NCBI_GenBank
Match: CEP16280.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8 Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0
Query: 29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPV-ATP--RVLYIFACNRGPCQEKEGSFCVLRS 122
V LG+ +I N D Y TK+GG PI L + S P + +C C P+YL+ Q Y P+ +P RVLY++ACNR C K+GSF V+RS
Sbjct: 14 VLLGIPDGDIEADN------DVYVTKLGGLPIWL-EPSKPPSSKVCQCRICHKPMYLIFQSYVPLQGSPYHRVLYVWACNRRSCMRKDGSFSVIRS 102
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_004237463.1 (PREDICTED: probable 20S rRNA accumulation protein 4 [Solanum lycopersicum]) HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8 Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 0
Query: 27 GPVWLGVQGKEIRTVNGKEEAVDGYTTKIGG---WPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVA------TPRVLYIFACNRGPCQEKEGSFCVLRSQEAV 126
G V+LG+ G EA D YTTKIGG WPI LP S+ D +C C++ L LLAQVYAP++ RV+Y+F C C S+ LR Q++V
Sbjct: 2 GGVFLGMPG---TWAGNMHEAADHYTTKIGGLPDWPIPLPSASV--DLF--KCSACRSDLSLLAQVYAPISHKSLNIEERVIYVFCCLMPECGSSTVSWRALRIQKSV 102 The following BLAST results are available for this feature:
BLAST of NO27G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00140 ID=NO27G00140|Name=NO27G00140|organism=Nannochloropsis oceanica|type=gene|length=1302bpback to top protein sequence of NO27G00140.1 >NO27G00140.1-protein ID=NO27G00140.1-protein|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bpback to top Synonyms
Publications
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