NO27G00140, NO27G00140 (gene) Nannochloropsis oceanica

Overview
NameNO27G00140
Unique NameNO27G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr27:43441..44742 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:43441..44742 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of NO27G00140 vs. NCBI_GenBank
Match: CDH50344.1 (hypothetical protein RO3G_06958 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 0
Query:   28 PVWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
            PV LG+    I +     + VD Y TKIGG P+ L    L P      CG+C+ P+YL+ Q Y P+A     RV+Y++ CN+  C  KEGSF VLRS
Sbjct:   14 PVLLGLPDGAIES----SDDVDAYITKIGGVPVWLDSEKL-PSPKVLECGNCRRPMYLIFQGYVPLADSPYHRVIYVWGCNQRLCMRKEGSFSVLRS 105          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: OBZ86563.1 (putative programmed cell death protein 2, partial [Choanephora cucurbitarum])

HSP 1 Score: 75.1 bits (183), Expect = 3.500e-10
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   26 QGPVWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
            + PV LG+   EI   N      D Y TK+GG P+ L + S  P +    C  C+ P+YL+ Q YAP+      RVLY++ CNR  C  KEGSF VLRS
Sbjct:   21 EAPVLLGLPDGEIEVDN------DAYITKLGGLPLWL-EPSKPPSSQLCHCKVCRKPMYLIFQSYAPLPDSPYHRVLYVWGCNRRACMRKEGSFSVLRS 112          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: EPB89241.1 (hypothetical protein HMPREF1544_03981 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 71.2 bits (173), Expect = 5.000e-9
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
            V LG+   +I   N      D Y TK+GG P+ L + S  P +    C  C  P+YL+ Q Y P+      RVLY++ACNR  C  KEGSF V+RS
Sbjct:   14 VLLGIPDGDIEVDN------DAYITKLGGLPVWL-EPSKPPSSKVCECRICHNPMYLIFQSYVPLQDSPYHRVLYVWACNRRSCMRKEGSFSVIRS 102          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: GAN03817.1 (conserved hypothetical protein [Mucor ambiguus])

HSP 1 Score: 71.2 bits (173), Expect = 5.000e-9
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
            V LG+   +I   N      D Y TK+GG P+ L + S  P +    C  C +P+YL+ Q Y P+      RVLY++ACNR  C  KEGSF V+RS
Sbjct:   14 VLLGIPDGDIEVDN------DAYITKLGGLPVWL-EPSKPPSSKVCECRICHSPMYLIFQSYVPLQESPYHRVLYVWACNRRACMRKEGSFSVVRS 102          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_008862793.1 (hypothetical protein H310_01464 [Aphanomyces invadans] >ETW08988.1 hypothetical protein H310_01464 [Aphanomyces invadans])

HSP 1 Score: 70.5 bits (171), Expect = 8.500e-9
Identity = 40/100 (40.00%), Postives = 49/100 (49.00%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPI------SLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLYIFACNRGPCQEKEGSFCVLRSQ 123
            V LG+  K++R      +    YT K+GG P       S+P   LH       C  C   LYL+AQ+YAPV TPR LYIF CN   C     S+ V R Q
Sbjct:    7 VLLGIPAKDVRV-----DETCPYTAKLGGIPAWFNAANSIPDSQLH-------CPQCHNSLYLVAQIYAPVTTPRSLYIFGCNSAKCVTVPNSWRVFRFQ 94          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_008862794.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW08989.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 70.5 bits (171), Expect = 8.500e-9
Identity = 40/100 (40.00%), Postives = 49/100 (49.00%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPI------SLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLYIFACNRGPCQEKEGSFCVLRSQ 123
            V LG+  K++R      +    YT K+GG P       S+P   LH       C  C   LYL+AQ+YAPV TPR LYIF CN   C     S+ V R Q
Sbjct:    7 VLLGIPAKDVRV-----DETCPYTAKLGGIPAWFNAANSIPDSQLH-------CPQCHNSLYLVAQIYAPVTTPRSLYIFGCNSAKCVTVPNSWRVFRFQ 94          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_015071645.1 (PREDICTED: probable 20S rRNA accumulation protein 4 [Solanum pennellii])

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:   27 GPVWLGVQGKEIRTVNGKEEAVDGYTTKIGG---WPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVA------TPRVLYIFACNRGPCQEKEGSFCVLRSQEAVTA 128
            G V+LG+ G          EA D YTTKIGG   WPI LP  S+  D    +C  C++ L LLAQVYAP+A        RV+Y+F C    C     S+  LR Q++V +
Sbjct:    2 GGVFLGMPG---TWAGNMHEAADHYTTKIGGLPDWPIPLPSASV--DLF--KCSSCRSDLSLLAQVYAPIAHKSLNIEERVIYVFCCLMPKCGSSTVSWRALRIQKSVNS 104          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: ORZ16591.1 (programmed cell death protein 2 [Absidia repens])

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8
Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATP---RVLYIFACNRGPCQEKEGSFCVLRS 122
            V LG+   EI     KE+  D Y TK+GG PI L      P     +C  C   +YLL Q Y P+      RV+YIFACNR  C  KEGSF ++RS
Sbjct:   20 VLLGLPDGEI----PKEDDTDPYITKLGGLPIWLTNDKSPPSDYC-QCRICGQWMYLLCQTYVPLPDSVYHRVIYIFACNRRSCMRKEGSFSIVRS 110          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: CEP16280.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0
Query:   29 VWLGVQGKEIRTVNGKEEAVDGYTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPV-ATP--RVLYIFACNRGPCQEKEGSFCVLRS 122
            V LG+   +I   N      D Y TK+GG PI L + S  P +   +C  C  P+YL+ Q Y P+  +P  RVLY++ACNR  C  K+GSF V+RS
Sbjct:   14 VLLGIPDGDIEADN------DVYVTKLGGLPIWL-EPSKPPSSKVCQCRICHKPMYLIFQSYVPLQGSPYHRVLYVWACNRRSCMRKDGSFSVIRS 102          
BLAST of NO27G00140 vs. NCBI_GenBank
Match: XP_004237463.1 (PREDICTED: probable 20S rRNA accumulation protein 4 [Solanum lycopersicum])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 0
Query:   27 GPVWLGVQGKEIRTVNGKEEAVDGYTTKIGG---WPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVA------TPRVLYIFACNRGPCQEKEGSFCVLRSQEAV 126
            G V+LG+ G          EA D YTTKIGG   WPI LP  S+  D    +C  C++ L LLAQVYAP++        RV+Y+F C    C     S+  LR Q++V
Sbjct:    2 GGVFLGMPG---TWAGNMHEAADHYTTKIGGLPDWPIPLPSASV--DLF--KCSACRSDLSLLAQVYAPISHKSLNIEERVIYVFCCLMPECGSSTVSWRALRIQKSV 102          
The following BLAST results are available for this feature:
BLAST of NO27G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CDH50344.12.000e-1043.30hypothetical protein RO3G_06958 [Lichtheimia corym... [more]
OBZ86563.13.500e-1043.43putative programmed cell death protein 2, partial ... [more]
EPB89241.15.000e-941.67hypothetical protein HMPREF1544_03981 [Mucor circi... [more]
GAN03817.15.000e-941.67conserved hypothetical protein [Mucor ambiguus][more]
XP_008862793.18.500e-940.00hypothetical protein H310_01464 [Aphanomyces invad... [more]
XP_008862794.18.500e-940.00hypothetical protein, variant [Aphanomyces invadan... [more]
XP_015071645.11.100e-840.91PREDICTED: probable 20S rRNA accumulation protein ... [more]
ORZ16591.11.100e-843.75programmed cell death protein 2 [Absidia repens][more]
CEP16280.11.400e-842.71hypothetical protein [Parasitella parasitica][more]
XP_004237463.14.200e-840.74PREDICTED: probable 20S rRNA accumulation protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00140.1NO27G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00140.1NO27G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00140 ID=NO27G00140|Name=NO27G00140|organism=Nannochloropsis oceanica|type=gene|length=1302bp
CTCGTTTCACGATGCGGCTAAATTCCTTCTCCTCCACACAATACACCCTC
TCACACATTCAGTCACACACTCTCTAGCCCAGGATTGACACTGGGGGGAG
ATGTACAAGCAAAAGACGGGCCTTGGCGACAGCATCAGCAAAACCAGCAG
TAGCACCACCACCACGAGCGAGGAGCAAGGCCCCGTGTGGTTGGGCGTAC
AGGGCAAGGAAATCAGAACTGTCAACGGCAAGGAGGAGGCTGTAGATGGC
TACACGACCAAAATAGGCGGCTGGCCGgtgcgtgttaatagacaagaaac
attctgatcgctctctcctcaaaaacctcccctccctcccaccctcccac
ccctccctccctcccttcctccttccctatctccctcgcttcctttgtct
caactgttatccctctcacatctttcgcgttcctgtggcacatcattgtg
ctccatttcactcctttctcccagATCTCCCTCCCTCAAGGCAGCTTGCA
CCCGGACGCCCTCTCCCCTAGATGCGGACACTGCCAGACCCCCCTCTACC
TCCTCGCGCAGgtatgttgagccctctctctcctccctccctccttcctt
cccctcagtgcttcgcccatccactcagaccgttccattcgctcatgcca
tccctccctccccccatccctagGTATACGCCCCTGTTGCCACTCCTCGT
GTGCTGTACATCTTTGCTTGCAATCGTGGACCGTGCCAAGAGAAGGAGGG
CAGgtagggatgaagggagagaaggaagaagggagggggagagggacagg
ataggcgacaatgcaattcccgctctttacttcctccctcccttcctcag
gctgttacttcctccctcccttcctcccttccctccacccacacagCTTC
TGCGTCCTCCGAAGCCAAGAAGCAGTAACAGCCCTCCCTCCTTCTCTCCT
TCCTTCCCTCCCTCACTCAGCTCCCCCTCCTTCCCTTCCTCTGCAAGCGC
AAGCACTTCCCCAAAAGGAAGGGGCAGAGGGAGGAGGAGGAGGAAAAGGA
GGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAAGTGGATG
ATGGTGAATGGGGCGAGGAGGAGGGAGAGGAGATAGATCTGGAGGCGCTA
CTAAAGGCGCGAGACCTGTCATTGGCTGAAAAGGAAAAGAAGAGGGCCGG
CAGGAAGGAGGGAGGGGGGGGGGAGGGAGGGGGGAGGGAAAGAAGGTCGT
GA
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protein sequence of NO27G00140.1

>NO27G00140.1-protein ID=NO27G00140.1-protein|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MYKQKTGLGDSISKTSSSTTTTSEEQGPVWLGVQGKEIRTVNGKEEAVDG
YTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLY
IFACNRGPCQEKEGSFCVLRSQEAVTALPPSLLPSLPHSAPPPSLPLQAQ
ALPQKEGAEGGGGGKGGGGGGGGKGGGGGGGGGGGGGGGGGGGGGWEVDD
GEWGEEEGEEIDLEALLKARDLSLAEKEKKRAGRKEGGGGEGGGRERRS*
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Synonyms
Publications