NO27G00140.1, NO27G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00140.1
Unique NameNO27G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length850
Alignment locationchr27:43441..44742 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:43441..44742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00140NO27G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00140.1NO27G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00140.1.cds1NO27G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00140.1.cds2NO27G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00140.1.cds3NO27G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00140.1.cds4NO27G00140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00140.1 ID=NO27G00140.1|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
CTCGTTTCACGATGCGGCTAAATTCCTTCTCCTCCACACAATACACCCTC
TCACACATTCAGTCACACACTCTCTAGCCCAGGATTGACACTGGGGGGAG
ATGTACAAGCAAAAGACGGGCCTTGGCGACAGCATCAGCAAAACCAGCAG
TAGCACCACCACCACGAGCGAGGAGCAAGGCCCCGTGTGGTTGGGCGTAC
AGGGCAAGGAAATCAGAACTGTCAACGGCAAGGAGGAGGCTGTAGATGGC
TACACGACCAAAATAGGCGGCTGGCCGATCTCCCTCCCTCAAGGCAGCTT
GCACCCGGACGCCCTCTCCCCTAGATGCGGACACTGCCAGACCCCCCTCT
ACCTCCTCGCGCAGGTATACGCCCCTGTTGCCACTCCTCGTGTGCTGTAC
ATCTTTGCTTGCAATCGTGGACCGTGCCAAGAGAAGGAGGGCAGCTTCTG
CGTCCTCCGAAGCCAAGAAGCAGTAACAGCCCTCCCTCCTTCTCTCCTTC
CTTCCCTCCCTCACTCAGCTCCCCCTCCTTCCCTTCCTCTGCAAGCGCAA
GCACTTCCCCAAAAGGAAGGGGCAGAGGGAGGAGGAGGAGGAAAAGGAGG
AGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAAGTGGATGAT
GGTGAATGGGGCGAGGAGGAGGGAGAGGAGATAGATCTGGAGGCGCTACT
AAAGGCGCGAGACCTGTCATTGGCTGAAAAGGAAAAGAAGAGGGCCGGCA
GGAAGGAGGGAGGGGGGGGGGAGGGAGGGGGGAGGGAAAGAAGGTCGTGA
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protein sequence of NO27G00140.1

>NO27G00140.1-protein ID=NO27G00140.1-protein|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MYKQKTGLGDSISKTSSSTTTTSEEQGPVWLGVQGKEIRTVNGKEEAVDG
YTTKIGGWPISLPQGSLHPDALSPRCGHCQTPLYLLAQVYAPVATPRVLY
IFACNRGPCQEKEGSFCVLRSQEAVTALPPSLLPSLPHSAPPPSLPLQAQ
ALPQKEGAEGGGGGKGGGGGGGGKGGGGGGGGGGGGGGGGGGGGGWEVDD
GEWGEEEGEEIDLEALLKARDLSLAEKEKKRAGRKEGGGGEGGGRERRS*
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mRNA from alignment at chr27:43441..44742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00140.1 ID=NO27G00140.1|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp|location=Sequence derived from alignment at chr27:43441..44742+ (Nannochloropsis oceanica)
CTCGTTTCACGATGCGGCTAAATTCCTTCTCCTCCACACAATACACCCTC
TCACACATTCAGTCACACACTCTCTAGCCCAGGATTGACACTGGGGGGAG
ATGTACAAGCAAAAGACGGGCCTTGGCGACAGCATCAGCAAAACCAGCAG
TAGCACCACCACCACGAGCGAGGAGCAAGGCCCCGTGTGGTTGGGCGTAC
AGGGCAAGGAAATCAGAACTGTCAACGGCAAGGAGGAGGCTGTAGATGGC
TACACGACCAAAATAGGCGGCTGGCCGGTGCGTGTTAATAGACAAGAAAC
ATTCTGATCGCTCTCTCCTCAAAAACCTCCCCTCCCTCCCACCCTCCCAC
CCCTCCCTCCCTCCCTTCCTCCTTCCCTATCTCCCTCGCTTCCTTTGTCT
CAACTGTTATCCCTCTCACATCTTTCGCGTTCCTGTGGCACATCATTGTG
CTCCATTTCACTCCTTTCTCCCAGATCTCCCTCCCTCAAGGCAGCTTGCA
CCCGGACGCCCTCTCCCCTAGATGCGGACACTGCCAGACCCCCCTCTACC
TCCTCGCGCAGGTATGTTGAGCCCTCTCTCTCCTCCCTCCCTCCTTCCTT
CCCCTCAGTGCTTCGCCCATCCACTCAGACCGTTCCATTCGCTCATGCCA
TCCCTCCCTCCCCCCATCCCTAGGTATACGCCCCTGTTGCCACTCCTCGT
GTGCTGTACATCTTTGCTTGCAATCGTGGACCGTGCCAAGAGAAGGAGGG
CAGGTAGGGATGAAGGGAGAGAAGGAAGAAGGGAGGGGGAGAGGGACAGG
ATAGGCGACAATGCAATTCCCGCTCTTTACTTCCTCCCTCCCTTCCTCAG
GCTGTTACTTCCTCCCTCCCTTCCTCCCTTCCCTCCACCCACACAGCTTC
TGCGTCCTCCGAAGCCAAGAAGCAGTAACAGCCCTCCCTCCTTCTCTCCT
TCCTTCCCTCCCTCACTCAGCTCCCCCTCCTTCCCTTCCTCTGCAAGCGC
AAGCACTTCCCCAAAAGGAAGGGGCAGAGGGAGGAGGAGGAGGAAAAGGA
GGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAAGTGGATG
ATGGTGAATGGGGCGAGGAGGAGGGAGAGGAGATAGATCTGGAGGCGCTA
CTAAAGGCGCGAGACCTGTCATTGGCTGAAAAGGAAAAGAAGAGGGCCGG
CAGGAAGGAGGGAGGGGGGGGGGAGGGAGGGGGGAGGGAAAGAAGGTCGT
GA
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Coding sequence (CDS) from alignment at chr27:43441..44742+

>NO27G00140.1 ID=NO27G00140.1|Name=NO27G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr27:43441..44742+ (Nannochloropsis oceanica)
ATGTACAAGCAAAAGACGGGCCTTGGCGACAGCATCAGCAAAACCAGCAG
TAGCACCACCACCACGAGCGAGGAGCAAGGCCCCGTGTGGTTGGGCGTAC
AGGGCAAGGAAATCAGAACTGTCAACGGCAAGGAGGAGGCTGTAGATGGC
TACACGACCAAAATAGGCGGCTGGCCGATCTCCCTCCCTCAAGGCAGCTT
GCACCCGGACGCCCTCTCCCCTAGATGCGGACACTGCCAGACCCCCCTCT
ACCTCCTCGCGCAGGTATACGCCCCTGTTGCCACTCCTCGTGTGCTGTAC
ATCTTTGCTTGCAATCGTGGACCGTGCCAAGAGAAGGAGGGCAGCTTCTG
CGTCCTCCGAAGCCAAGAAGCAGTAACAGCCCTCCCTCCTTCTCTCCTTC
CTTCCCTCCCTCACTCAGCTCCCCCTCCTTCCCTTCCTCTGCAAGCGCAA
GCACTTCCCCAAAAGGAAGGGGCAGAGGGAGGAGGAGGAGGAAAAGGAGG
AGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAAGTGGATGAT
GGTGAATGGGGCGAGGAGGAGGGAGAGGAGATAGATCTGGAGGCGCTACT
AAAGGCGCGAGACCTGTCATTGGCTGAAAAGGAAAAGAAGAGGGCCGGCA
GGAAGGAGGGAGGGGGGGGGGAGGGAGGGGGGAGGGAAAGAAGGTCGTGA
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Synonyms
Publications