NO27G00110, NO27G00110 (gene) Nannochloropsis oceanica

Overview
NameNO27G00110
Unique NameNO27G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2499
Alignment locationchr27:31523..34021 +

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Properties
Property NameValue
DescriptionPeptide methionine sulfoxide reductase A5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:31523..34021 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008113peptide-methionine (S)-S-oxide reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036509Met_Sox_Rdtase_MsrA_sf
IPR002569Met_Sox_Rdtase_MsrA
Homology
BLAST of NO27G00110 vs. NCBI_GenBank
Match: EWM20416.1 (hypothetical protein Naga_101490g1 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 4.500e-30
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 0
Query:  304 MPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLPGPEGEEKANKRI 375
            MPVA A  TFFTPAKLDHQAYSKPRCD AAPNVQL+LTG+KR++DHYHYSVDCPTC+LPGPEGEEKAN+R+
Sbjct:    1 MPVALAEQTFFTPAKLDHQAYSKPRCDGAAPNVQLILTGLKRRVDHYHYSVDCPTCSLPGPEGEEKANRRL 71          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: WP_043443379.1 (peptide-methionine (S)-S-oxide reductase MsrA [Streptomyces nodosus] >AJE42230.1 peptide methionine sulfoxide reductase [Streptomyces nodosus])

HSP 1 Score: 85.1 bits (209), Expect = 5.000e-13
Identity = 65/197 (32.99%), Postives = 83/197 (42.13%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATF-RCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLA-----------TKRGQTWSSMPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKID---HYHYSVDCPTCTLPGPE 366
            P G E A F +GC+WGAE TF R   GV  T VG+ GG    P YE        H EA+ V Y     +YERLLKV   + +         DVG +Y+  ++  S  Q+  A           T  G    +  V  A    F PA+  HQ Y     DA  PN    L G   ++      ++   CPT   P PE
Sbjct:   42 PEGLEIADFGMGCFWGAERTFWRLPEGVWTTLVGYQGGHTENPTYEEVCSGLTGHTEAVRVVYDPRKISYERLLKVFWESHNPTQGFRQGNDVGTQYRSAVYTHSPAQAAAAEASREAYQKVLTASGHGRITTEVLPAEGRTFYPAEAYHQQYLS---DAKNPNGYCGLGGTGVELTAPFETNWGASCPTGIAPAPE 235          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: ACY99929.1 (peptide methionine sulfoxide reductase [Thermomonospora curvata DSM 43183])

HSP 1 Score: 84.3 bits (207), Expect = 8.500e-13
Identity = 65/190 (34.21%), Postives = 80/190 (42.11%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLA-----------TKRGQTWSSMPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLP 363
            P G+E A FALGC+WGAE TF    GV+ T VG+ GG  P P YE        H EA+ V Y     TYERLL+V   + D         D+G +Y+  I+  S  Q   A           T  G    +  +A A   +F  A+  HQ Y     DA  PN    L G           V CP    P
Sbjct:   45 PEGSEIADFALGCFWGAERTFWQVPGVITTAVGYQGGYTPNPTYEEVCSGLTGHAEAVRVVYDPAKVTYERLLRVFWESHDPTQGMRQGNDIGTQYRSAIYTHSEAQRKAAEASREAYQKALTAAGHGTITTEIAPAGPFYF--AEPYHQQYLS---DAKNPNGYCGLGGT---------GVSCPVGIAP 220          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: WP_041442658.1 (peptide-methionine (S)-S-oxide reductase MsrA [Thermomonospora curvata] >PKK12259.1 peptide-methionine (S)-S-oxide reductase MsrA [Thermomonospora sp. CIF 1])

HSP 1 Score: 84.3 bits (207), Expect = 8.500e-13
Identity = 65/190 (34.21%), Postives = 80/190 (42.11%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLA-----------TKRGQTWSSMPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLP 363
            P G+E A FALGC+WGAE TF    GV+ T VG+ GG  P P YE        H EA+ V Y     TYERLL+V   + D         D+G +Y+  I+  S  Q   A           T  G    +  +A A   +F  A+  HQ Y     DA  PN    L G           V CP    P
Sbjct:   33 PEGSEIADFALGCFWGAERTFWQVPGVITTAVGYQGGYTPNPTYEEVCSGLTGHAEAVRVVYDPAKVTYERLLRVFWESHDPTQGMRQGNDIGTQYRSAIYTHSEAQRKAAEASREAYQKALTAAGHGTITTEIAPAGPFYF--AEPYHQQYLS---DAKNPNGYCGLGGT---------GVSCPVGIAP 208          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: WP_058193752.1 (MULTISPECIES: peptide-methionine (S)-S-oxide reductase [Proteobacteria] >KSG86461.1 peptide-methionine (S)-S-oxide reductase [Pseudomonas aeruginosa] >PIC02432.1 peptide-methionine (S)-S-oxide reductase [Caulobacter sp. FWC26])

HSP 1 Score: 83.6 bits (205), Expect = 1.500e-12
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 0
Query:  199 EKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENTKDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLATK------RGQTWSSMPVADAS-STFFTPAKLDHQAY 325
            E+A  A GC+WG E  FR  RGVVGTRVG++GG+ P P Y     H EA+E+T+     +Y ++L+   +  D         DVGP Y+  I+  S  Q  +A K          W    V++ +    F  A+ +HQ Y
Sbjct:    4 ERAILAGGCFWGLEDLFRRARGVVGTRVGYIGGEMPDPTYARHHGHAEAVEITFDPAVTSYRKILEYFFQIHDPTTYEQQGSDVGPSYRSAIFYTSQAQMDVALKTIAEIEASGRWPGPVVSEINPEEPFWEAEAEHQLY 143          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: OCL36639.1 (peptide-methionine (S)-S-oxide reductase [Tessaracoccus lapidicaptus] >AQX17145.1 peptide-methionine (S)-S-oxide reductase [Tessaracoccus sp. T2.5-30])

HSP 1 Score: 83.2 bits (204), Expect = 1.900e-12
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLATK-RGQTWSSMPVADAS--STFFTP------AKLDHQAY 325
            P GAE A+FALGCYWG E  F  T GVV T  GFMGG  P P Y  T      H E ++V +     +YE LL++     D         D+G +Y+  ++P    Q   A + RG+   ++  A     +T  TP      A+++HQ Y
Sbjct:   38 PPGAEVAYFALGCYWGVERLFWETDGVVNTAAGFMGGFTPNPTYRETCTGRTGHTETVQVVFDPQRVSYEELLRLFWENHDPTQLNRQGNDIGTQYRSAVFPVDEEQRAAAERTRGEFQENLSAAGYGEITTEITPGQTFYFAEVEHQQY 187          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: WP_078920413.1 (MULTISPECIES: peptide-methionine (S)-S-oxide reductase MsrA [Tessaracoccus])

HSP 1 Score: 83.2 bits (204), Expect = 1.900e-12
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLATK-RGQTWSSMPVADAS--STFFTP------AKLDHQAY 325
            P GAE A+FALGCYWG E  F  T GVV T  GFMGG  P P Y  T      H E ++V +     +YE LL++     D         D+G +Y+  ++P    Q   A + RG+   ++  A     +T  TP      A+++HQ Y
Sbjct:   33 PPGAEVAYFALGCYWGVERLFWETDGVVNTAAGFMGGFTPNPTYRETCTGRTGHTETVQVVFDPQRVSYEELLRLFWENHDPTQLNRQGNDIGTQYRSAVFPVDEEQRAAAERTRGEFQENLSAAGYGEITTEITPGQTFYFAEVEHQQY 182          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: WP_003954888.1 (peptide-methionine (S)-S-oxide reductase MsrA [Streptomyces clavuligerus] >EDY49399.1 peptide methionine sulfoxide reductase [Streptomyces clavuligerus ATCC 27064] >ANW18451.1 peptide-methionine (S)-S-oxide reductase [Streptomyces clavuligerus])

HSP 1 Score: 82.8 bits (203), Expect = 2.500e-12
Identity = 61/197 (30.96%), Postives = 80/197 (40.61%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLATKRGQTWSSMPVADASSTF-----------FTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLPGPEGEEK 370
            P G E A F LGC+WGAE  F    GV  T VG+ GG  P P Y+ T      H E + V Y   + +YERLLKV   + D         DVG +Y+  ++  S  Q+  A    + +  +  A   ST            F PA+  HQ Y         P     + G           V CP    P P+ E+K
Sbjct:   42 PEGLETADFGLGCFWGAERKFWQLPGVWTTLVGYQGGCTPHPTYDETCSGLTGHTEVVRVVYDPAEISYERLLKVFWESHDPTQGFRQGNDVGTQYRSAVYTHSPEQTATAKASREAYQKVLTASGHSTITTEILPADGLPFYPAEAYHQQYLDKN-----PAGYCGIGGT---------GVSCPIGVAPAPDPEQK 224          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: EFG08920.1 (Peptide methionine sulfoxide reductase [Streptomyces clavuligerus ATCC 27064])

HSP 1 Score: 82.8 bits (203), Expect = 2.500e-12
Identity = 61/197 (30.96%), Postives = 80/197 (40.61%), Query Frame = 0
Query:  195 PVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENT----KDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLATKRGQTWSSMPVADASSTF-----------FTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLPGPEGEEK 370
            P G E A F LGC+WGAE  F    GV  T VG+ GG  P P Y+ T      H E + V Y   + +YERLLKV   + D         DVG +Y+  ++  S  Q+  A    + +  +  A   ST            F PA+  HQ Y         P     + G           V CP    P P+ E+K
Sbjct:   68 PEGLETADFGLGCFWGAERKFWQLPGVWTTLVGYQGGCTPHPTYDETCSGLTGHTEVVRVVYDPAEISYERLLKVFWESHDPTQGFRQGNDVGTQYRSAVYTHSPEQTATAKASREAYQKVLTASGHSTITTEILPADGLPFYPAEAYHQQYLDKN-----PAGYCGIGGT---------GVSCPIGVAPAPDPEQK 250          
BLAST of NO27G00110 vs. NCBI_GenBank
Match: OGP18018.1 (peptide-methionine (S)-S-oxide reductase [Deltaproteobacteria bacterium GWA2_55_82] >OGQ62047.1 peptide-methionine (S)-S-oxide reductase [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_55_12] >OIJ74096.1 peptide-methionine (S)-S-oxide reductase [Deltaproteobacteria bacterium GWC2_55_46])

HSP 1 Score: 82.4 bits (202), Expect = 3.200e-12
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 0
Query:  193 INPVGAEKAFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYE----NTKDHLEAIEVTYTGGDETYERLLKVCGRTFDFV-------DVGPRYQRKIWPASSGQSGLA------TKRGQTWSSMPVAD-ASSTFFTPAKLDHQAYSKPR 329
            +N    EKA FA GC+WG E TFR  +GV+ TRVG+ GG    P YE     +  H EA+EVT+  G  +Y   L +     D         D+G +Y+  I+  S+ Q  LA       ++   +S   V + A +  F PA+  HQ Y K R
Sbjct:    1 MNEKKTEKAVFAAGCFWGVEETFRNVKGVISTRVGYTGGSTEDPSYEEVCTESTGHAEAVEVTFDPGTVSYGEFLNIFWDIHDPTTLDRQGPDIGSQYRSAIFYMSTEQERLAMGSKERLEQSGIYSGPIVTEIAPAGVFYPAEEYHQKYLKKR 154          
The following BLAST results are available for this feature:
BLAST of NO27G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20416.14.500e-3084.51hypothetical protein Naga_101490g1 [Nannochloropsi... [more]
WP_043443379.15.000e-1332.99peptide-methionine (S)-S-oxide reductase MsrA [Str... [more]
ACY99929.18.500e-1334.21peptide methionine sulfoxide reductase [Thermomono... [more]
WP_041442658.18.500e-1334.21peptide-methionine (S)-S-oxide reductase MsrA [The... [more]
WP_058193752.11.500e-1235.00MULTISPECIES: peptide-methionine (S)-S-oxide reduc... [more]
OCL36639.11.900e-1235.33peptide-methionine (S)-S-oxide reductase [Tessarac... [more]
WP_078920413.11.900e-1235.33MULTISPECIES: peptide-methionine (S)-S-oxide reduc... [more]
WP_003954888.12.500e-1230.96peptide-methionine (S)-S-oxide reductase MsrA [Str... [more]
EFG08920.12.500e-1230.96Peptide methionine sulfoxide reductase [Streptomyc... [more]
OGP18018.13.200e-1235.06peptide-methionine (S)-S-oxide reductase [Deltapro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR116ngnoR116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00110.1NO27G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608792gene_10116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101490g1gene9989Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00110.1NO27G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00110 ID=NO27G00110|Name=NO27G00110|organism=Nannochloropsis oceanica|type=gene|length=2499bp
ATGGCCTCGTCCCCGTTCCTCCGTCCACTTCCTACCTTTCTCCTCTTCAT
CCTCCTCGTCCTTCTGCTTGATCTCTTTTCCAGCACCACCGCCTTCTTCC
TCCCTTGTCCTTCCTCGTCTCAACTGCAACAGCAGCAAAAGCAGTGTGGA
GGGATTACAAGAAGAGGATCAGGACGACCAGCAGCAGTAATTAAATTAAG
AGCAACGGCGCGGGACGACAAGGGGAAGGAAGAAGAGATAACAGGATTGG
AAGGGACGAATGAAGGGATGGTCTCCCGGCGGCATCGTCGGACTCCGGCT
TTAGAAGAGCAGCGAGAAATGCGGGCCTCGCGgtaaggaaggggaggggg
agaagattatctcctattacgacctacccccgaccctttcctccgcgcga
tcttgcaggagcatttgaacgaccacatgggtatgagtcattcattcctc
ttgtatttcctccctccctccctccctccccgcaagGGCCCAAGCTGTGC
AAAATGCGCTTTCTGTTGCCGCCATGGGCATGGGGAGCGCCATATTCGGG
GTGCAGCGGGCGCAGGCCCTTGAAGGGGGAAGTGGGGGCATGTCGCTGAT
TGATCCTGgtgcggagggaggaagggaggaagggagggaggaatggaggg
agggagggaggaatggagggagggagggagggagactggaaatgtcattc
cacgcgcatatttttttcttcattcctctccctctgccccttcctccccc
cccccctcccgcccctccagGCGAGCCCTCGGGTGGTGCCAAGGCGATTG
ACTTTCTACAGCAGTTGAAGATCGAGCTGGTGGGGGCAAAGGAGGAGTTT
GAGGAGCTGCAGCCGCAAGAGgtaagcccccccccctccctccctccctc
cctccctcccacctccctcccgccctccctccctctctccctaaatgtga
gcttctaataagctctgacataccagcctcacatttaaacgtacttgcac
ttcatccctccctccctccttgcctcctttcccccagGCCAAGCGGCTGA
TGAAGGAGATCAACCCCGTGGGCGCCGAGAAAGCCTTCTTCGCCCTCGGC
TGCTgtgagtgagctgttccctccctcccccccaccctccatcactccct
ccctccttccattctgcgaaagtccacatcctctcccaccccctcactcg
ctcctttcctccatttccttctctctccctcctctccttcctccctcctt
cctttcgtttcctccccttccttctccctccctcctctccttcctccctc
cttcctccccacctccgcaatccctccctccttccctccctccctctttt
tagACTGGGGCGCCGAGGCCACGTTCCGCTGCACGAGGGGCGTGGTGGGC
ACCCGCGTCGGCTTTATGGGCGGGAAGCAACCGGCACCCTTCTACGAAAA
CACCAAGGACCATCTGGAAGgtacgtgcctgccttccctccctccctccc
tccctccctccctgggcatcaagagcatgttgtccagtcacagtatcgtg
gaaggtgtatacgttacaggaattaacttacaacaatgctggaatataat
gaacttacatttatgcatgactctgattgactttccgccgctccttatca
caaaaacgccgaggaccttctctagagccctctttctcgagcatgcgtac
atcctttacctgacccctccctccctccctccttccttccctcccctccc
tccttccctccctccctgcagCCATCGAAGTCACCTACACGGGCGGCGAC
GAGACATACGAGCGTCTGCTGAAGGTGTGCGGGCGAACATTCGACTTTGT
GGATGTTGGCCCGCGGTACCAAAGGAAGATATGgtaggaagggagggagg
gaggggagggaggagggaagggaggagggaaggaagcagtgtcatcattg
catttttcaacggggaagcaggagggagacaagacgtagagaaccttcca
gaaggtggttggttcctcggcatcattccctaagataccccgccccctgc
ctcttcctcccccctcgcatgcagGCCGGCGTCATCGGGCCAGAGTGGGC
TGGCGACCAAGAGAGGGCAGACGTGGAGCTCCATGCCCGTGGCGGACGCC
TCGAGCACCTTTTTCACGCCTGCCAAACTCGATCACCAAGCATACAGCAA
GCCCCGCTGTGACGCCGCGGCGCCCAACGTCCAACTGGTCCTAACGGGCA
TGAAGAGGAAGATCGATCATTACCATTACAGCGTGgtgagtccgagaggg
agggagggcgagagggagggagggcgagagggagggatggatggattgag
ggtgagagggactgaagggtctgaatctgtcggcagtgccagtctgtttc
tcaaataatctgtcgtctccttttatctttgtgcagGACTGTCCCACCTG
CACCTTGCCCGGCCCCGAGGGCGAAGAGAAGGCAAACAAGCGCATTTAG
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protein sequence of NO27G00110.1

>NO27G00110.1-protein ID=NO27G00110.1-protein|Name=NO27G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MASSPFLRPLPTFLLFILLVLLLDLFSSTTAFFLPCPSSSQLQQQQKQCG
GITRRGSGRPAAVIKLRATARDDKGKEEEITGLEGTNEGMVSRRHRRTPA
LEEQREMRASRAQAVQNALSVAAMGMGSAIFGVQRAQALEGGSGGMSLID
PGEPSGGAKAIDFLQQLKIELVGAKEEFEELQPQEAKRLMKEINPVGAEK
AFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENTKDHLEAIEV
TYTGGDETYERLLKVCGRTFDFVDVGPRYQRKIWPASSGQSGLATKRGQT
WSSMPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHY
HYSVDCPTCTLPGPEGEEKANKRI*
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Synonyms
Publications