NO27G00110.1, NO27G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00110.1
Unique NameNO27G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr27:31523..34021 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:31523..34021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00110.1 vs.
Match: EWM20416.1 (hypothetical protein Naga_101490g1 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 4.500e-30
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 0 
Query:  304 MPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHYHYSVDCPTCTLPGPEGEEKANKRI 375
            MPVA A  TFFTPAKLDHQAYSKPRCD AAPNVQL+LTG+KR++DHYHYSVDCPTC+LPGPEGEEKAN+R+
Sbjct:    1 MPVALAEQTFFTPAKLDHQAYSKPRCDGAAPNVQLILTGLKRRVDHYHYSVDCPTCSLPGPEGEEKANRRL 71
The following BLAST results are available for this feature:
BLAST of NO27G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20416.14.500e-3084.51hypothetical protein Naga_101490g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00110NO27G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00110.1NO27G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00110.1.cds1NO27G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds2NO27G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds3NO27G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds4NO27G00110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds5NO27G00110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds6NO27G00110.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds7NO27G00110.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00110.1.cds8NO27G00110.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00110.1 ID=NO27G00110.1|Name=NO27G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGGCCTCGTCCCCGTTCCTCCGTCCACTTCCTACCTTTCTCCTCTTCAT
CCTCCTCGTCCTTCTGCTTGATCTCTTTTCCAGCACCACCGCCTTCTTCC
TCCCTTGTCCTTCCTCGTCTCAACTGCAACAGCAGCAAAAGCAGTGTGGA
GGGATTACAAGAAGAGGATCAGGACGACCAGCAGCAGTAATTAAATTAAG
AGCAACGGCGCGGGACGACAAGGGGAAGGAAGAAGAGATAACAGGATTGG
AAGGGACGAATGAAGGGATGGTCTCCCGGCGGCATCGTCGGACTCCGGCT
TTAGAAGAGCAGCGAGAAATGCGGGCCTCGCGGGCCCAAGCTGTGCAAAA
TGCGCTTTCTGTTGCCGCCATGGGCATGGGGAGCGCCATATTCGGGGTGC
AGCGGGCGCAGGCCCTTGAAGGGGGAAGTGGGGGCATGTCGCTGATTGAT
CCTGGCGAGCCCTCGGGTGGTGCCAAGGCGATTGACTTTCTACAGCAGTT
GAAGATCGAGCTGGTGGGGGCAAAGGAGGAGTTTGAGGAGCTGCAGCCGC
AAGAGGCCAAGCGGCTGATGAAGGAGATCAACCCCGTGGGCGCCGAGAAA
GCCTTCTTCGCCCTCGGCTGCTACTGGGGCGCCGAGGCCACGTTCCGCTG
CACGAGGGGCGTGGTGGGCACCCGCGTCGGCTTTATGGGCGGGAAGCAAC
CGGCACCCTTCTACGAAAACACCAAGGACCATCTGGAAGCCATCGAAGTC
ACCTACACGGGCGGCGACGAGACATACGAGCGTCTGCTGAAGGTGTGCGG
GCGAACATTCGACTTTGTGGATGTTGGCCCGCGGTACCAAAGGAAGATAT
GGCCGGCGTCATCGGGCCAGAGTGGGCTGGCGACCAAGAGAGGGCAGACG
TGGAGCTCCATGCCCGTGGCGGACGCCTCGAGCACCTTTTTCACGCCTGC
CAAACTCGATCACCAAGCATACAGCAAGCCCCGCTGTGACGCCGCGGCGC
CCAACGTCCAACTGGTCCTAACGGGCATGAAGAGGAAGATCGATCATTAC
CATTACAGCGTGGACTGTCCCACCTGCACCTTGCCCGGCCCCGAGGGCGA
AGAGAAGGCAAACAAGCGCATTTAG
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protein sequence of NO27G00110.1

>NO27G00110.1-protein ID=NO27G00110.1-protein|Name=NO27G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MASSPFLRPLPTFLLFILLVLLLDLFSSTTAFFLPCPSSSQLQQQQKQCG
GITRRGSGRPAAVIKLRATARDDKGKEEEITGLEGTNEGMVSRRHRRTPA
LEEQREMRASRAQAVQNALSVAAMGMGSAIFGVQRAQALEGGSGGMSLID
PGEPSGGAKAIDFLQQLKIELVGAKEEFEELQPQEAKRLMKEINPVGAEK
AFFALGCYWGAEATFRCTRGVVGTRVGFMGGKQPAPFYENTKDHLEAIEV
TYTGGDETYERLLKVCGRTFDFVDVGPRYQRKIWPASSGQSGLATKRGQT
WSSMPVADASSTFFTPAKLDHQAYSKPRCDAAAPNVQLVLTGMKRKIDHY
HYSVDCPTCTLPGPEGEEKANKRI*
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mRNA from alignment at chr27:31523..34021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00110.1 ID=NO27G00110.1|Name=NO27G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp|location=Sequence derived from alignment at chr27:31523..34021+ (Nannochloropsis oceanica)
ATGGCCTCGTCCCCGTTCCTCCGTCCACTTCCTACCTTTCTCCTCTTCAT
CCTCCTCGTCCTTCTGCTTGATCTCTTTTCCAGCACCACCGCCTTCTTCC
TCCCTTGTCCTTCCTCGTCTCAACTGCAACAGCAGCAAAAGCAGTGTGGA
GGGATTACAAGAAGAGGATCAGGACGACCAGCAGCAGTAATTAAATTAAG
AGCAACGGCGCGGGACGACAAGGGGAAGGAAGAAGAGATAACAGGATTGG
AAGGGACGAATGAAGGGATGGTCTCCCGGCGGCATCGTCGGACTCCGGCT
TTAGAAGAGCAGCGAGAAATGCGGGCCTCGCGGTAAGGAAGGGGAGGGGG
AGAAGATTATCTCCTATTACGACCTACCCCCGACCCTTTCCTCCGCGCGA
TCTTGCAGGAGCATTTGAACGACCACATGGGTATGAGTCATTCATTCCTC
TTGTATTTCCTCCCTCCCTCCCTCCCTCCCCGCAAGGGCCCAAGCTGTGC
AAAATGCGCTTTCTGTTGCCGCCATGGGCATGGGGAGCGCCATATTCGGG
GTGCAGCGGGCGCAGGCCCTTGAAGGGGGAAGTGGGGGCATGTCGCTGAT
TGATCCTGGTGCGGAGGGAGGAAGGGAGGAAGGGAGGGAGGAATGGAGGG
AGGGAGGGAGGAATGGAGGGAGGGAGGGAGGGAGACTGGAAATGTCATTC
CACGCGCATATTTTTTTCTTCATTCCTCTCCCTCTGCCCCTTCCTCCCCC
CCCCCCTCCCGCCCCTCCAGGCGAGCCCTCGGGTGGTGCCAAGGCGATTG
ACTTTCTACAGCAGTTGAAGATCGAGCTGGTGGGGGCAAAGGAGGAGTTT
GAGGAGCTGCAGCCGCAAGAGGTAAGCCCCCCCCCCTCCCTCCCTCCCTC
CCTCCCTCCCACCTCCCTCCCGCCCTCCCTCCCTCTCTCCCTAAATGTGA
GCTTCTAATAAGCTCTGACATACCAGCCTCACATTTAAACGTACTTGCAC
TTCATCCCTCCCTCCCTCCTTGCCTCCTTTCCCCCAGGCCAAGCGGCTGA
TGAAGGAGATCAACCCCGTGGGCGCCGAGAAAGCCTTCTTCGCCCTCGGC
TGCTGTGAGTGAGCTGTTCCCTCCCTCCCCCCCACCCTCCATCACTCCCT
CCCTCCTTCCATTCTGCGAAAGTCCACATCCTCTCCCACCCCCTCACTCG
CTCCTTTCCTCCATTTCCTTCTCTCTCCCTCCTCTCCTTCCTCCCTCCTT
CCTTTCGTTTCCTCCCCTTCCTTCTCCCTCCCTCCTCTCCTTCCTCCCTC
CTTCCTCCCCACCTCCGCAATCCCTCCCTCCTTCCCTCCCTCCCTCTTTT
TAGACTGGGGCGCCGAGGCCACGTTCCGCTGCACGAGGGGCGTGGTGGGC
ACCCGCGTCGGCTTTATGGGCGGGAAGCAACCGGCACCCTTCTACGAAAA
CACCAAGGACCATCTGGAAGGTACGTGCCTGCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTGGGCATCAAGAGCATGTTGTCCAGTCACAGTATCGTG
GAAGGTGTATACGTTACAGGAATTAACTTACAACAATGCTGGAATATAAT
GAACTTACATTTATGCATGACTCTGATTGACTTTCCGCCGCTCCTTATCA
CAAAAACGCCGAGGACCTTCTCTAGAGCCCTCTTTCTCGAGCATGCGTAC
ATCCTTTACCTGACCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCCTCCC
TCCTTCCCTCCCTCCCTGCAGCCATCGAAGTCACCTACACGGGCGGCGAC
GAGACATACGAGCGTCTGCTGAAGGTGTGCGGGCGAACATTCGACTTTGT
GGATGTTGGCCCGCGGTACCAAAGGAAGATATGGTAGGAAGGGAGGGAGG
GAGGGGAGGGAGGAGGGAAGGGAGGAGGGAAGGAAGCAGTGTCATCATTG
CATTTTTCAACGGGGAAGCAGGAGGGAGACAAGACGTAGAGAACCTTCCA
GAAGGTGGTTGGTTCCTCGGCATCATTCCCTAAGATACCCCGCCCCCTGC
CTCTTCCTCCCCCCTCGCATGCAGGCCGGCGTCATCGGGCCAGAGTGGGC
TGGCGACCAAGAGAGGGCAGACGTGGAGCTCCATGCCCGTGGCGGACGCC
TCGAGCACCTTTTTCACGCCTGCCAAACTCGATCACCAAGCATACAGCAA
GCCCCGCTGTGACGCCGCGGCGCCCAACGTCCAACTGGTCCTAACGGGCA
TGAAGAGGAAGATCGATCATTACCATTACAGCGTGGTGAGTCCGAGAGGG
AGGGAGGGCGAGAGGGAGGGAGGGCGAGAGGGAGGGATGGATGGATTGAG
GGTGAGAGGGACTGAAGGGTCTGAATCTGTCGGCAGTGCCAGTCTGTTTC
TCAAATAATCTGTCGTCTCCTTTTATCTTTGTGCAGGACTGTCCCACCTG
CACCTTGCCCGGCCCCGAGGGCGAAGAGAAGGCAAACAAGCGCATTTAG
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Coding sequence (CDS) from alignment at chr27:31523..34021+

>NO27G00110.1 ID=NO27G00110.1|Name=NO27G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr27:31523..34021+ (Nannochloropsis oceanica)
ATGGCCTCGTCCCCGTTCCTCCGTCCACTTCCTACCTTTCTCCTCTTCAT
CCTCCTCGTCCTTCTGCTTGATCTCTTTTCCAGCACCACCGCCTTCTTCC
TCCCTTGTCCTTCCTCGTCTCAACTGCAACAGCAGCAAAAGCAGTGTGGA
GGGATTACAAGAAGAGGATCAGGACGACCAGCAGCAGTAATTAAATTAAG
AGCAACGGCGCGGGACGACAAGGGGAAGGAAGAAGAGATAACAGGATTGG
AAGGGACGAATGAAGGGATGGTCTCCCGGCGGCATCGTCGGACTCCGGCT
TTAGAAGAGCAGCGAGAAATGCGGGCCTCGCGGGCCCAAGCTGTGCAAAA
TGCGCTTTCTGTTGCCGCCATGGGCATGGGGAGCGCCATATTCGGGGTGC
AGCGGGCGCAGGCCCTTGAAGGGGGAAGTGGGGGCATGTCGCTGATTGAT
CCTGGCGAGCCCTCGGGTGGTGCCAAGGCGATTGACTTTCTACAGCAGTT
GAAGATCGAGCTGGTGGGGGCAAAGGAGGAGTTTGAGGAGCTGCAGCCGC
AAGAGGCCAAGCGGCTGATGAAGGAGATCAACCCCGTGGGCGCCGAGAAA
GCCTTCTTCGCCCTCGGCTGCTACTGGGGCGCCGAGGCCACGTTCCGCTG
CACGAGGGGCGTGGTGGGCACCCGCGTCGGCTTTATGGGCGGGAAGCAAC
CGGCACCCTTCTACGAAAACACCAAGGACCATCTGGAAGCCATCGAAGTC
ACCTACACGGGCGGCGACGAGACATACGAGCGTCTGCTGAAGGTGTGCGG
GCGAACATTCGACTTTGTGGATGTTGGCCCGCGGTACCAAAGGAAGATAT
GGCCGGCGTCATCGGGCCAGAGTGGGCTGGCGACCAAGAGAGGGCAGACG
TGGAGCTCCATGCCCGTGGCGGACGCCTCGAGCACCTTTTTCACGCCTGC
CAAACTCGATCACCAAGCATACAGCAAGCCCCGCTGTGACGCCGCGGCGC
CCAACGTCCAACTGGTCCTAACGGGCATGAAGAGGAAGATCGATCATTAC
CATTACAGCGTGGACTGTCCCACCTGCACCTTGCCCGGCCCCGAGGGCGA
AGAGAAGGCAAACAAGCGCATTTAG
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Synonyms
Publications