NO27G00060, NO27G00060 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00060 vs. NCBI_GenBank
Match: EWM20415.1 (gtpase [Nannochloropsis gaditana]) HSP 1 Score: 349.7 bits (896), Expect = 9.300e-93 Identity = 183/279 (65.59%), Postives = 210/279 (75.27%), Query Frame = 0 Query: 43 ALAPTIYTLSGIFDEPLVSSSDPSLPSRPPHSSSATSLLPSPSLRGKAKALFTGHPIYHSPASLGYALPPIQSNKHTEVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHSYFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGVVYNE 322 +L PTIYTLS IF++ +SD P P S S +SLLPS SLR KAK LF+ +YHSPASL YALPP+ S+KHTEVA LGRSNVGKSSLVAALLGGG LVRTSK PGCTQTLNLYSLQGH YFYLVDLPGYGFARAG +RE W+E TLSY+ +RGLDVL+RTLLL+DAR GVMK DE AMDL D+HAVPYQ+VLTK+DAL+ + R +TL QVL CTQ+RH ACWP+V+ TSS+TGEGV+ LRECLA +VY E Sbjct: 90 SLTPTIYTLSDIFEDR--PTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGG---------------AGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351
BLAST of NO27G00060 vs. NCBI_GenBank
Match: WP_090021080.1 (YihA family ribosome biogenesis GTP-binding protein [Limimonas halophila] >SDG36695.1 GTP-binding protein [Limimonas halophila]) HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29 Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 0 Query: 112 PIQSNKHTEVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHSYFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGV 318 P +++ E+AF GRSN GKSSL+ AL+G L RTS+TPG TQ +N + L G LVDLPGYG+A+A + + W E T Y+ RG L+R +LVDARRGV D M D AVPYQ++LTK D +RSQAA +T+ V +H A PVV TS++TG G++E+R LA + Sbjct: 48 PSFAHETPEIAFAGRSNCGKSSLINALVG---------------------QKMLARTSQTPGRTQQINFFDLAG--ALMLVDLPGYGYAKAPKDKVRRWTELTYDYL--RGRPNLRRVCVLVDARRGVRDNDRAVMTALDQAAVPYQVLLTKADKMRSQAALTETVQAVRD--LGPKHVALHPVVRVTSAQTGRGIEEVRGELAAL 226
BLAST of NO27G00060 vs. NCBI_GenBank
Match: CDZ65488.1 (Probable GTP-binding protein EngB [Neorhizobium galegae bv. orientalis]) HSP 1 Score: 135.2 bits (339), Expect = 3.600e-28 Identity = 85/206 (41.26%), Postives = 112/206 (54.37%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGVV 319 EVAF GRSNVGKSSL+ AL+G L RTS TPG TQ LN + G+S LVD+PGYG+A+A + + W Y+ RG LKR +L+D+R G+ K DE +DL D AV YQIVLTK D ++ A +K L + R+H A +P V TTSS+ G+G++ELR+ +A V Sbjct: 36 EVAFAGRSNVGKSSLINALVG---------------------QKGLARTSNTPGRTQELNYFVPDGYSGAGTDLPPMALVDMPGYGYAKAPKETVDAWTRLVFDYL--RGRATLKRVYVLIDSRHGIKKNDEEVLDLLDKAAVSYQIVLTKTDKIKEPAV-VKLLAETQEKI--RKHPAAFPFVLTTSSEKGKGIEELRQAIAETV 215
BLAST of NO27G00060 vs. NCBI_GenBank
Match: WP_046610964.1 (YihA family ribosome biogenesis GTP-binding protein [Neorhizobium galegae]) HSP 1 Score: 135.2 bits (339), Expect = 3.600e-28 Identity = 85/206 (41.26%), Postives = 112/206 (54.37%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGVV 319 EVAF GRSNVGKSSL+ AL+G L RTS TPG TQ LN + G+S LVD+PGYG+A+A + + W Y+ RG LKR +L+D+R G+ K DE +DL D AV YQIVLTK D ++ A +K L + R+H A +P V TTSS+ G+G++ELR+ +A V Sbjct: 32 EVAFAGRSNVGKSSLINALVG---------------------QKGLARTSNTPGRTQELNYFVPDGYSGAGTDLPPMALVDMPGYGYAKAPKETVDAWTRLVFDYL--RGRATLKRVYVLIDSRHGIKKNDEEVLDLLDKAAVSYQIVLTKTDKIKEPAV-VKLLAETQEKI--RKHPAAFPFVLTTSSEKGKGIEELRQAIAETV 211
BLAST of NO27G00060 vs. NCBI_GenBank
Match: WP_056774254.1 (YihA family ribosome biogenesis GTP-binding protein [Novosphingobium sp. Leaf2] >KQM14771.1 GTP-binding protein [Novosphingobium sp. Leaf2]) HSP 1 Score: 135.2 bits (339), Expect = 3.600e-28 Identity = 94/235 (40.00%), Postives = 123/235 (52.34%), Query Frame = 0 Query: 86 LRGKAKALFTGHPIY-HSPASLGYALPPIQSNKHTEVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHSYFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCT---QRRHTACWPVVYTTSSKTGEGVQELRECLAG 317 L +A+ LF+G + S SL + P + E+AF GRSNVGKSSL+ AL+G + RTS TPG TQ LN + + F LVD+PGYGFA+A E+W Y+ RG VLKRTLLLVDAR GV D M + D+ AV Y+IVLTK D +++ +H T R+H A +PVV+ TSS+ G G+ ELR + G Sbjct: 10 LTERARKLFSGPVTFLKSAPSLNFLPEP----ETPEIAFCGRSNVGKSSLLNALVG---------------------RKAIARTSVTPGRTQELNFFDVAEPLRFRLVDMPGYGFAKAPPKVVENWRRLVRDYL--RGRVVLKRTLLLVDARHGVKPVDADMMKMLDEAAVGYRIVLTKADKIKASE------LDAVHAATIAEARKHPAAFPVVHVTSSEKGLGIDELRAAVLG 211
BLAST of NO27G00060 vs. NCBI_GenBank
Match: PKP77302.1 (YihA family ribosome biogenesis GTP-binding protein [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3]) HSP 1 Score: 135.2 bits (339), Expect = 3.600e-28 Identity = 83/200 (41.50%), Postives = 110/200 (55.00%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSL--QGHSYFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGV 318 EVAF GRSNVGKSSL+ AL G L RTS TPG T+ LN + L QGH+ LVDLPGYG+AR + R +W +SY+ RG L+R +L+DAR G+ + D M + D+ AV YQIVLTK+D L+ I+T + + RRH A P + TSS+ G+G+ LR +A + Sbjct: 46 EVAFAGRSNVGKSSLINALTG---------------------RKTLARTSNTPGRTKELNFFELGPQGHAAIMLVDLPGYGYARETKARVGEWTRLVMSYL--RGRPQLRRVFVLIDARHGIKENDHEVMSMLDEAAVSYQIVLTKIDKLKK--GEIETRLEEVRAAI-RRHVAAHPAIVATSSEKGDGIATLRAEVASL 219
BLAST of NO27G00060 vs. NCBI_GenBank
Match: WP_007876386.1 (MULTISPECIES: YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum] >EMG53870.1 GTP-binding protein YsxC [Ochrobactrum sp. CDB2] >OYR29210.1 ribosome biogenesis GTP-binding protein YsxC [Ochrobactrum pseudogrignonense] >PQZ43980.1 YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum pseudogrignonense] >PRA43728.1 YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum pseudogrignonense] >PRA71804.1 YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum pseudogrignonense]) HSP 1 Score: 134.8 bits (338), Expect = 4.700e-28 Identity = 86/203 (42.36%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLA 316 E+AF GRSNVGKSSL+ AL+G L RTS TPG TQ LN + G+S LVD+PGYGFA A + + W Y+ RG LKR LL+D+R G+ K D +DL D AV YQIVLTK+D ++ AA I L + H T++R AC+P + TTSS+ G G+ ELR +A Sbjct: 59 EIAFAGRSNVGKSSLINALVG---------------------KKGLARTSNTPGRTQELNYFVPDGYSGENGDLPPLALVDMPGYGFAEAPKAHVDAWTRLVFDYL--RGRTTLKRVYLLIDSRHGIKKNDAEVLDLLDKAAVSYQIVLTKIDKIK--AAGIPRLIEETHALTKKR-AACFPGIITTSSEKGLGLDELRAAIA 235
BLAST of NO27G00060 vs. NCBI_GenBank
Match: ANG98429.1 (YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum pseudogrignonense]) HSP 1 Score: 134.8 bits (338), Expect = 4.700e-28 Identity = 86/203 (42.36%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLA 316 E+AF GRSNVGKSSL+ AL+G L RTS TPG TQ LN + G+S LVD+PGYGFA A + + W Y+ RG LKR LL+D+R G+ K D +DL D AV YQIVLTK+D ++ AA I L + H T++R AC+P + TTSS+ G G+ ELR +A Sbjct: 49 EIAFAGRSNVGKSSLINALVG---------------------KKGLARTSNTPGRTQELNYFVPDGYSGENGDLPPLALVDMPGYGFAEAPKAHVDAWTRLVFDYL--RGRTTLKRVYLLIDSRHGIKKNDAEVLDLLDKAAVSYQIVLTKIDKIK--AAGIPRLIEETHALTKKR-AACFPGIITTSSEKGLGLDELRAAIA 225
BLAST of NO27G00060 vs. NCBI_GenBank
Match: OJY02530.1 (YihA family ribosome biogenesis GTP-binding protein [Rhizobiales bacterium 63-22]) HSP 1 Score: 134.8 bits (338), Expect = 4.700e-28 Identity = 88/207 (42.51%), Postives = 111/207 (53.62%), Query Frame = 0 Query: 119 TEVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGVV 319 TE+AF GRSNVGKSSL+ AL G L RTS TPG TQ LN + G+S LVD+PGYGFA A + + + W Y+ RG LKR +L+DAR G+ K D +DL D AV YQIVLTK+D ++ AA + L + H T RR AC+P + TSS+ G G+ ELR +A VV Sbjct: 41 TEIAFAGRSNVGKSSLINALTG---------------------KKGLARTSNTPGRTQELNYFVPDGYSGEKGDLPPLALVDMPGYGFAEAPKAQVDAWTRLVFDYL--RGRTTLKRVYVLIDARHGIKKNDADVLDLLDKAAVSYQIVLTKIDKIK--AAGVPRLMEETHRLTVRR-AACFPGIIATSSEKGLGLDELRAAIALVV 221
BLAST of NO27G00060 vs. NCBI_GenBank
Match: WP_085982971.1 (YihA family ribosome biogenesis GTP-binding protein [Ochrobactrum sp. CDB2]) HSP 1 Score: 134.8 bits (338), Expect = 4.700e-28 Identity = 86/203 (42.36%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 120 EVAFLGRSNVGKSSLVAALLGGGXXXXXXXXXXXXXXXXXXXXSQLVRTSKTPGCTQTLNLYSLQGHS-------YFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLA 316 E+AF GRSNVGKSSL+ AL+G L RTS TPG TQ LN + G+S LVD+PGYGFA A + + W Y+ RG LKR LL+D+R G+ K D +DL D AV YQIVLTK+D ++ AA I L + H T++R AC+P + TTSS+ G G+ ELR +A Sbjct: 66 EIAFAGRSNVGKSSLINALVG---------------------KKGLARTSNTPGRTQELNYFVPDGYSGENGDLPPLALVDMPGYGFAEAPKAHVDAWTRLVFDYL--RGRTTLKRVYLLIDSRHGIKKNDAEVLDLLDKAAVSYQIVLTKIDKIK--AAGIPRLIEETHALTKKR-AACFPGIITTSSEKGLGLDELRAAIA 242 The following BLAST results are available for this feature:
BLAST of NO27G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00060 ID=NO27G00060|Name=NO27G00060|organism=Nannochloropsis oceanica|type=gene|length=1506bpback to top protein sequence of NO27G00060.1 >NO27G00060.1-protein ID=NO27G00060.1-protein|Name=NO27G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bpback to top Synonyms
Publications
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