NO27G00060.1, NO27G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00060.1
Unique NameNO27G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr27:18578..20083 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:18578..20083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00060.1 vs.
Match: EWM20415.1 (gtpase [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 3.400e-95
Identity = 205/357 (57.42%), Postives = 240/357 (67.23%), Query Frame = 0 
Query:    1 MVSTIRVTTRRRPRPPSSHDRHLSR-------------------------RPASRNPSPAAAPLPP-----------LALAPTIYTLSGIFDEPLVSSSDPSLPSRPPHSSSATSLLPSPSLRGKAKALFTGHPIYHSPASLGYALPPIQSNKHTEVAFLGRSNVGKSSLVAALLGGGNKGGERGGSSGGGQGEGKAHSQLVRTSKTPGCTQTLNLYSLQGHSYFYLVDLPGYGFARAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTSSKTGEGVQELRECLAGVVYNE 322
            + S +  TTRR+   P S  RH++R                         R  +R PSP   P PP           L+L PTIYTLS IF++    +SD   P   P S S +SLLPS SLR KAK LF+   +YHSPASL YALPP+ S+KHTEVA LGRSNVGKSSLVAALLGGG            G+G+G     LVRTSK PGCTQTLNLYSLQGH YFYLVDLPGYGFARAG  +RE W+E TLSY+ +RGLDVL+RTLLL+DAR GVMK DE AMDL D+HAVPYQ+VLTK+DAL+  + R +TL QVL  CTQ+RH ACWP+V+ TSS+TGEGV+ LRECLA +VY E
Sbjct:   12 LASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDR--PTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGG-----------AGRGKGP----LVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351
The following BLAST results are available for this feature:
BLAST of NO27G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20415.13.400e-9557.42gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00060NO27G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00060.1NO27G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00060.1.cds1NO27G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00060.1.cds2NO27G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00060.1.cds3NO27G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00060.1.cds4NO27G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00060.1.cds5NO27G00060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00060.1 ID=NO27G00060.1|Name=NO27G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGGTATCTACCATCCGTGTAACCACCAGAAGAAGACCTCGGCCACCGTC
CAGCCACGACAGGCACCTATCCCGACGTCCAGCATCCCGCAACCCATCTC
CTGCTGCTGCTCCTCTACCTCCTCTCGCCCTTGCCCCCACTATCTACACG
CTCTCCGGCATCTTTGACGAGCCTCTGGTGTCCTCCTCTGATCCCTCCCT
CCCCTCCCGACCTCCTCACTCCTCCTCCGCCACCTCACTGTTGCCTTCAC
CCTCCCTGCGCGGCAAGGCCAAAGCCCTTTTTACAGGACACCCGATTTAC
CATTCACCGGCCTCCTTGGGTTATGCTCTCCCTCCTATTCAAAGTAACAA
GCACACTGAGGTAGCTTTCTTAGGGAGATCTAACGTGGGCAAGTCCAGCC
TGGTAGCCGCCTTGCTAGGAGGAGGGAATAAAGGGGGAGAACGAGGAGGG
AGTAGTGGCGGAGGACAAGGTGAAGGAAAGGCACATTCGCAGCTGGTACG
AACGAGCAAGACGCCAGGGTGCACGCAGACGTTGAATTTGTACAGCTTGC
AGGGCCACTCCTACTTCTATCTGGTCGACTTGCCCGGCTATGGCTTTGCT
CGAGCAGGGGAAGGACGAAGGGAGGACTGGATGGAAACCACCCTCTCCTA
CATGCAGACAAGAGGGTTGGACGTGCTGAAGAGAACGCTGCTGCTGGTGG
ACGCCAGGCGTGGGGTCATGAAGCAGGATGAGCTGGCCATGGATCTCTTC
GACGACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCT
CCGCAGCCAAGCCGCGAGGATCAAGACCCTGACGCAGGTCCTCCACACAT
GCACGCAACGCCGACACACCGCTTGCTGGCCTGTGGTATACACCACCAGC
AGCAAGACGGGCGAGGGCGTCCAAGAGCTCCGGGAGTGCCTGGCCGGTGT
CGTCTACAATGAGTGA
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protein sequence of NO27G00060.1

>NO27G00060.1-protein ID=NO27G00060.1-protein|Name=NO27G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MVSTIRVTTRRRPRPPSSHDRHLSRRPASRNPSPAAAPLPPLALAPTIYT
LSGIFDEPLVSSSDPSLPSRPPHSSSATSLLPSPSLRGKAKALFTGHPIY
HSPASLGYALPPIQSNKHTEVAFLGRSNVGKSSLVAALLGGGNKGGERGG
SSGGGQGEGKAHSQLVRTSKTPGCTQTLNLYSLQGHSYFYLVDLPGYGFA
RAGEGRREDWMETTLSYMQTRGLDVLKRTLLLVDARRGVMKQDELAMDLF
DDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRHTACWPVVYTTS
SKTGEGVQELRECLAGVVYNE*
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mRNA from alignment at chr27:18578..20083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00060.1 ID=NO27G00060.1|Name=NO27G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp|location=Sequence derived from alignment at chr27:18578..20083- (Nannochloropsis oceanica)
ATGGTATCTACCATCCGTGTAACCACCAGAAGAAGACCTCGGCCACCGTC
CAGGTACGACTTCCGCACCCTCAATGCTCCCCTCCCTCTTGGCTCTATGC
CTCACATTCCCCCGACACCAGCCACGACAGGCACCTATCCCGACGTCCAG
CATCCCGCAACCCATCTCCTGCTGCTGCTCCTCTACCTCCTCTCGCCCTT
GCCCCCACTATCTACACGCTCTCCGGCATCTTTGACGAGCCTCTGGTGTC
CTCCTCTGATCCCTCCCTCCCCTCCCGACCTCCTCACTCCTCCTCCGCCA
CCTCACTGTTGCCTTCACCCTCCCTGCGCGGCAAGGCCAAAGCCCTTTTT
ACAGGACACCCGATTTACCATTCACCGGCCTCCTTGGGTTATGCTCTCCC
TCCTATTCAAAGTAACAAGCACACTGAGGTAGCTTTCTTAGGGAGATCTA
ACGTGGGCAAGTCCAGCCTGGTAGCCGCCTTGCTAGGAGGAGGGAATAAA
GGGGGAGAACGAGGAGGGAGTAGTGGCGGAGGACAAGGTGAAGGAAAGGC
ACATTCGCAGCTGGTACGAACGAGCAAGACGCCAGGGTGCACGCAGACGT
TGAATTTGTACAGCTTGCAGGTGAGGTCGGGGAGGCCATCCTCCTTTCCT
TCCTTCGTCCTTCCCTCCCCCTCATTTTTCTGAATCTCCTCCCGTGTTCT
TGTTCCATTCTCGAATTTATCTGCTGAAGCCAGAAATAGGTTAGAATGCG
CCACATTCAATGACGGACCCCACCGTCCTCCTTCCTTCCCTCCCTCTCTC
CCTCTCTCCCTCTCTCCCTCCCTCGTTCGCACAGGGCCACTCCTACTTCT
ATCTGGTCGACTTGCCCGGCTATGGCTTTGCTCGAGCAGGGGAAGGACGA
AGGGAGGACTGGATGGAAACCACCCTCTCCTACATGCAGACAAGAGGGTT
GGACGTGCTGAAGAGAACGCTGCTGCTGGTGGACGCCAGGCGTGGGGTCA
TGAAGCAGGATGAGGTAAGGGTGGTTTGCCTTCCCTTACCCCCTCCCCCT
CCTCCATCTTTCATTCTTTTTTCCCTTCCCTTTCTTTCCTCTTTTTCTTT
TTGTTTCTTCATTTCACTCTTCCTGATTCCGTCTGATCCCCTTTGTCACT
CTATCTCTCCTCCCTCCCTCCCTCCCTCAGCTGGCCATGGATCTCTTCGA
CGACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCTCC
GCAGCCAAGCCGCGAGGATCAAGACCCTGACGCAGGTGCTGCCACGAGGA
GGAGGAGGGTGATGATGACAAGGGGCGAAATGTTTGAACTCACTTACCTT
CCCTCCCTCGCTCCCTCCCTCCCGCAGGTCCTCCACACATGCACGCAACG
CCGACACACCGCTTGCTGGCCTGTGGTATACACCACCAGCAGCAAGACGG
GCGAGGGCGTCCAAGAGCTCCGGGAGTGCCTGGCCGGTGTCGTCTACAAT
GAGTGA
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Coding sequence (CDS) from alignment at chr27:18578..20083-

>NO27G00060.1 ID=NO27G00060.1|Name=NO27G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr27:18578..20083- (Nannochloropsis oceanica)
ATGGTATCTACCATCCGTGTAACCACCAGAAGAAGACCTCGGCCACCGTC
CAGCCACGACAGGCACCTATCCCGACGTCCAGCATCCCGCAACCCATCTC
CTGCTGCTGCTCCTCTACCTCCTCTCGCCCTTGCCCCCACTATCTACACG
CTCTCCGGCATCTTTGACGAGCCTCTGGTGTCCTCCTCTGATCCCTCCCT
CCCCTCCCGACCTCCTCACTCCTCCTCCGCCACCTCACTGTTGCCTTCAC
CCTCCCTGCGCGGCAAGGCCAAAGCCCTTTTTACAGGACACCCGATTTAC
CATTCACCGGCCTCCTTGGGTTATGCTCTCCCTCCTATTCAAAGTAACAA
GCACACTGAGGTAGCTTTCTTAGGGAGATCTAACGTGGGCAAGTCCAGCC
TGGTAGCCGCCTTGCTAGGAGGAGGGAATAAAGGGGGAGAACGAGGAGGG
AGTAGTGGCGGAGGACAAGGTGAAGGAAAGGCACATTCGCAGCTGGTACG
AACGAGCAAGACGCCAGGGTGCACGCAGACGTTGAATTTGTACAGCTTGC
AGGGCCACTCCTACTTCTATCTGGTCGACTTGCCCGGCTATGGCTTTGCT
CGAGCAGGGGAAGGACGAAGGGAGGACTGGATGGAAACCACCCTCTCCTA
CATGCAGACAAGAGGGTTGGACGTGCTGAAGAGAACGCTGCTGCTGGTGG
ACGCCAGGCGTGGGGTCATGAAGCAGGATGAGCTGGCCATGGATCTCTTC
GACGACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCT
CCGCAGCCAAGCCGCGAGGATCAAGACCCTGACGCAGGTCCTCCACACAT
GCACGCAACGCCGACACACCGCTTGCTGGCCTGTGGTATACACCACCAGC
AGCAAGACGGGCGAGGGCGTCCAAGAGCTCCGGGAGTGCCTGGCCGGTGT
CGTCTACAATGAGTGA
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Synonyms
Publications