NO26G01290, NO26G01290 (gene) Nannochloropsis oceanica

Overview
NameNO26G01290
Unique NameNO26G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2350
Alignment locationchr26:415466..417815 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:415466..417815 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G01290 vs. NCBI_GenBank
Match: EWM23150.1 (hypothetical protein Naga_100043g6 [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 7.500e-19
Identity = 76/212 (35.85%), Postives = 104/212 (49.06%), Query Frame = 0 
Query:   43 SSSYSHSSDISAALYVDVAVPFQVKLRNNEVETILLTVDDDAEVLASNFTQHQHALPPSLQDALAQQLRVRQLDMAREIIKALDQDARAAMRAHVAALEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMDSTENRRVQEAEYQGLETQLIRRSDRIILLEEGASTTAAESQDVVKHLKERLRESEVARGKVAGKLKRTERD 255
            S S   SS  S ALY +V VPFQ++L NNEVE I +++DDD +  A  F   ++ LPP+LQD LAQ LR+RQLD+ARE+IK +DQD R A+  HVA ++D                                          TEN      + Q L+ +L RR   I+ LE   S    ESQ  + HL   L ES+ +   +  +L+  E +
Sbjct:   41 SPSSCASSRDSGALYSEVTVPFQIRLHNNEVEIISVSLDDDVQEAAERFAA-RYDLPPALQDRLAQMLRIRQLDLARELIKGMDQDMRVALLEHVALVKDSAACVEGGV--------------------------------KTEN---LAEDLQALDAELSRRLKHIVFLESKMSIATTESQRNLAHLTHLLEESKTSNRNLGARLEAKEME 216
The following BLAST results are available for this feature:
BLAST of NO26G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23150.17.500e-1935.85hypothetical protein Naga_100043g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01290.1NO26G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600690gene_7958Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g6gene7281Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01290.1NO26G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01290 ID=NO26G01290|Name=NO26G01290|organism=Nannochloropsis oceanica|type=gene|length=2350bp
ACAGGGCGACCGGAACCACCATCAAGCAGCGTACTGACTGGAGGGGTTTG
CGGGCTTTCAACAGGAGAAGCCGTCGTCATCAAGACTCCTCCAGGCGCTA
CTCTCCTTGTCCCGCCTTGGCCCCATTGAAACAAATCACATGAGCCGATC
TCCTTCACTATCGGAAGGAGACGACGATGGCCTTAACAACGGTGGTTATC
TCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTTGACCGCACTTCCAGC
CCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTCCTCCGACATCAGCGC
CGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAGTCAAGTTGCGAAATA
ATGAAGTAGAGACCATCCTGCTCACCGTCGATGACGACGCCGAGGTGCTG
GCGTCCAATTTTACACAACACCAGCACGCCCTCCCTCCCTCCCTCCAGGA
CGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGGACATGGCTCGCGAAA
TTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCAATGCGTGCCCATGTC
GCGGCATTGGAAGATAAATCAACATCAGCAGCAGCAGCAACAGCAGCGGC
TGCAGCATCAACCATGGCAACGATAGGAGGGGTTCAGAGAGATAAGGAGG
AGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATGGATAGCACCGAAAAT
CGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGAAACACAATTGATTCG
GCGATCAGATCGAATTATTTTGTTGGAAGAAGGGGCGTCAACGACCGCAG
CCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAGAGGCTGCGAGAGTCA
GAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAAGAGGACGGAGAGGGA
TGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCATGGCCGAGTCGAAGG
AAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGACGCCGAGGTGGAGCGC
GACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTGGGAATTGCGGGTGCT
GCAACAGGTGGATAAAACCCACGAGGATACGGATGAAGGGTTGACAATGG
TCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCGGCGTATGGAGAGATG
AGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCGCTGGCTGGAGGGGGT
GATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGAAGAAACTGAGAGAGA
GACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATGAGCAGAGAATTGATG
AAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAGGGTGGCGAGTCAGGA
TTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGAGGAGGAGGAGTCATT
TTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTGTTGTGGAGAGAGGAT
GAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCAAGGAGGAGAAGGAGG
CAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCACCTTCATCTTGGCAGA
AGCAGCACGCCACGATTTCCGCGATCGAAAGTGCTTCGTGCGCATGTAAG
TCACCAGCATCGCAGCAACAAAAGCTTCAGCATCAGCCGCCGCCGCGAGT
ACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCACATCGGGAAACCCGCG
CGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCCTCCTCCTCCTCCTCT
TCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTCGAAATCATACGGCCC
CGACATTCGCCGCATGGTTCATCTACCGCATTTTGAAGAAATGATTGAAG
CAGAGGAGGGAGACGAGACAGACGACATTTACCCCATCCCGTCTGAACGA
GCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTTCATTGCGTGAGTTGA
AGTTGGTTATTTAATTTTCTGCCGTTCCTACACTCATATAGAACTATCGC
ATGCAAGCTGACATCCTCTAGGACTTGCATGCGTGGGCAAGCTTTCCAAC
AAAAAAATGTTGCATATACTTACCCCTATTCTTGTCCGAGTTTTTCTAGC
GATTTTGACAGGTTTTTCATCAGGCAAAGTCCCCGTTATTCAGGATGTGA
AGAGGAAATGGGAGAGTGCGTGTGGGAGGTGGACAAAGCTTGAGTAGTGA
AAAGGGTGTTTTTCTAAAAGATAAAAAATGTTTAGGCAAAGGCAAGCTGG
AGGTGTGTGTGTGAGTGAGCAACCAGGAGGTACATGGCAAGAACTAGTAC
GGTTACAACTGCAGACCCATAAGGGAAAAAAGAAAATTTATTAACATCCA
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protein sequence of NO26G01290.1

>NO26G01290.1-protein ID=NO26G01290.1-protein|Name=NO26G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSRSPSLSEGDDDGLNNGGYLSFGGSGLQKHFDRTSSPLSFFSSSYSHSS
DISAALYVDVAVPFQVKLRNNEVETILLTVDDDAEVLASNFTQHQHALPP
SLQDALAQQLRVRQLDMAREIIKALDQDARAAMRAHVAALEDKSTSAAAA
TAAAAASTMATIGGVQRDKEEEKEGGKEEGEMDSTENRRVQEAEYQGLET
QLIRRSDRIILLEEGASTTAAESQDVVKHLKERLRESEVARGKVAGKLKR
TERDARRLEEQVVATMAESKEEASCLEQRLRDAEVERDEMGRRLARREWE
LRVLQQVDKTHEDTDEGLTMVEEIQKRRHVEAAYGEMSKRLRRKEEQVRW
LEGVMASQDFQRKPLKKLRERLREVEEAYSEMSRELMKRDEEVRMLEVRV
ASQDLELKVLGEVVRRRRSHFHGQARGLGSVLLWREDEEEDVAEREGKQG
GEGGSQEGGTRASDSPSSWQKQHATISAIESASCACKSPASQQQKLQHQP
PPRVQEKHAAKSVRPHRETRASMSSRSSYSSSSSSSSSSSLSPPPSFASK
SYGPDIRRMVHLPHFEEMIEAEEGDETDDIYPIPSERATCPSSTPAAAFI
A*
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Synonyms
Publications