NO26G01290.1, NO26G01290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G01290.1
Unique Name	NO26G01290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2350
Alignment location	chr26:415466..417815 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:415466..417815 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO26G01290.1 vs.
Match: EWM23150.1 (hypothetical protein Naga_100043g6 [Nannochloropsis gaditana])

HSP 1 Score: 104.0 bits (258), Expect = 1.700e-18
Identity = 93/258 (36.05%), Postives = 128/258 (49.61%), Query Frame = 0

Query:   43 SSSYSHSSDISAALYVDVAVPFQVKLRNNEVETILLTVDDDAEVLASNFTQHQHALPPSLQDALAQQLRVRQLDMAREIIKALDQDARAAMRAHVAALEDKSTSAAAATAAAAASTMATIGGVQRDKEEEKEGGKEEGEMDSTENRRVQEAEYQGLETQLIRRSDRIILLEEGASTTAAESQDVVKHLKERLRESEVARGKVAGKLKRTERDARRLEEQVVATMAESKEEASCLEQRLRDAEVERDEMGRRLARREWE 301
            S S   SS  S ALY +V VPFQ++L NNEVE I +++DDD +  A  F   ++ LPP+LQD LAQ LR+RQLD+ARE+IK +DQD R A+  HVA ++D   SAA              GGV+ +   E                     + Q L+ +L RR   I+ LE   S    ESQ  + HL   L ES+ +   +  +L+  E + R LE  V +     K  A  L  R RD   E   +   + R++ E
Sbjct:   41 SPSSCASSRDSGALYSEVTVPFQIRLHNNEVEIISVSLDDDVQEAAERFAA-RYDLPPALQDRLAQMLRIRQLDLARELIKGMDQDMRVALLEHVALVKD---SAACVE-----------GGVKTENLAE---------------------DLQALDAELSRRLKHIVFLESKMSIATTESQRNLAHLTHLLEESKTSNRNLGARLEAKEMEIRELEALVASQDLTLKGLAQAL-TRARDLNGEVKRLEALVGRQKKE 261

The following BLAST results are available for this feature:

BLAST of NO26G01290.1 vs.

BLAST of NO26G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23150.1	1.700e-18	36.05	hypothetical protein Naga_100043g6 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO26G01290	NO26G01290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO26G01290.1	NO26G01290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO26G01290.1.cds1	NO26G01290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr26:415466..417815-
coding sequence from alignment at chr26:415466..417815-

mRNA sequence

>NO26G01290.1 ID=NO26G01290.1|Name=NO26G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp
ACAGGGCGACCGGAACCACCATCAAGCAGCGTACTGACTGGAGGGGTTTG
CGGGCTTTCAACAGGAGAAGCCGTCGTCATCAAGACTCCTCCAGGCGCTA
CTCTCCTTGTCCCGCCTTGGCCCCATTGAAACAAATCACATGAGCCGATC
TCCTTCACTATCGGAAGGAGACGACGATGGCCTTAACAACGGTGGTTATC
TCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTTGACCGCACTTCCAGC
CCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTCCTCCGACATCAGCGC
CGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAGTCAAGTTGCGAAATA
ATGAAGTAGAGACCATCCTGCTCACCGTCGATGACGACGCCGAGGTGCTG
GCGTCCAATTTTACACAACACCAGCACGCCCTCCCTCCCTCCCTCCAGGA
CGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGGACATGGCTCGCGAAA
TTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCAATGCGTGCCCATGTC
GCGGCATTGGAAGATAAATCAACATCAGCAGCAGCAGCAACAGCAGCGGC
TGCAGCATCAACCATGGCAACGATAGGAGGGGTTCAGAGAGATAAGGAGG
AGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATGGATAGCACCGAAAAT
CGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGAAACACAATTGATTCG
GCGATCAGATCGAATTATTTTGTTGGAAGAAGGGGCGTCAACGACCGCAG
CCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAGAGGCTGCGAGAGTCA
GAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAAGAGGACGGAGAGGGA
TGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCATGGCCGAGTCGAAGG
AAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGACGCCGAGGTGGAGCGC
GACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTGGGAATTGCGGGTGCT
GCAACAGGTGGATAAAACCCACGAGGATACGGATGAAGGGTTGACAATGG
TCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCGGCGTATGGAGAGATG
AGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCGCTGGCTGGAGGGGGT
GATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGAAGAAACTGAGAGAGA
GACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATGAGCAGAGAATTGATG
AAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAGGGTGGCGAGTCAGGA
TTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGAGGAGGAGGAGTCATT
TTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTGTTGTGGAGAGAGGAT
GAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCAAGGAGGAGAAGGAGG
CAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCACCTTCATCTTGGCAGA
AGCAGCACGCCACGATTTCCGCGATCGAAAGTGCTTCGTGCGCATGTAAG
TCACCAGCATCGCAGCAACAAAAGCTTCAGCATCAGCCGCCGCCGCGAGT
ACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCACATCGGGAAACCCGCG
CGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCCTCCTCCTCCTCCTCT
TCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTCGAAATCATACGGCCC
CGACATTCGCCGCATGGTTCATCTACCGCATTTTGAAGAAATGATTGAAG
CAGAGGAGGGAGACGAGACAGACGACATTTACCCCATCCCGTCTGAACGA
GCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTTCATTGCGTGAGTTGA
AGTTGGTTATTTAATTTTCTGCCGTTCCTACACTCATATAGAACTATCGC
ATGCAAGCTGACATCCTCTAGGACTTGCATGCGTGGGCAAGCTTTCCAAC
AAAAAAATGTTGCATATACTTACCCCTATTCTTGTCCGAGTTTTTCTAGC
GATTTTGACAGGTTTTTCATCAGGCAAAGTCCCCGTTATTCAGGATGTGA
AGAGGAAATGGGAGAGTGCGTGTGGGAGGTGGACAAAGCTTGAGTAGTGA
AAAGGGTGTTTTTCTAAAAGATAAAAAATGTTTAGGCAAAGGCAAGCTGG
AGGTGTGTGTGTGAGTGAGCAACCAGGAGGTACATGGCAAGAACTAGTAC
GGTTACAACTGCAGACCCATAAGGGAAAAAAGAAAATTTATTAACATCCA

protein sequence of NO26G01290.1

>NO26G01290.1-protein ID=NO26G01290.1-protein|Name=NO26G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSRSPSLSEGDDDGLNNGGYLSFGGSGLQKHFDRTSSPLSFFSSSYSHSS
DISAALYVDVAVPFQVKLRNNEVETILLTVDDDAEVLASNFTQHQHALPP
SLQDALAQQLRVRQLDMAREIIKALDQDARAAMRAHVAALEDKSTSAAAA
TAAAAASTMATIGGVQRDKEEEKEGGKEEGEMDSTENRRVQEAEYQGLET
QLIRRSDRIILLEEGASTTAAESQDVVKHLKERLRESEVARGKVAGKLKR
TERDARRLEEQVVATMAESKEEASCLEQRLRDAEVERDEMGRRLARREWE
LRVLQQVDKTHEDTDEGLTMVEEIQKRRHVEAAYGEMSKRLRRKEEQVRW
LEGVMASQDFQRKPLKKLRERLREVEEAYSEMSRELMKRDEEVRMLEVRV
ASQDLELKVLGEVVRRRRSHFHGQARGLGSVLLWREDEEEDVAEREGKQG
GEGGSQEGGTRASDSPSSWQKQHATISAIESASCACKSPASQQQKLQHQP
PPRVQEKHAAKSVRPHRETRASMSSRSSYSSSSSSSSSSSLSPPPSFASK
SYGPDIRRMVHLPHFEEMIEAEEGDETDDIYPIPSERATCPSSTPAAAFI
A*

mRNA from alignment at chr26:415466..417815-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO26G01290.1 ID=NO26G01290.1|Name=NO26G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at chr26:415466..417815- (Nannochloropsis oceanica)
ACAGGGCGACCGGAACCACCATCAAGCAGCGTACTGACTGGAGGGGTTTG
CGGGCTTTCAACAGGAGAAGCCGTCGTCATCAAGACTCCTCCAGGCGCTA
CTCTCCTTGTCCCGCCTTGGCCCCATTGAAACAAATCACATGAGCCGATC
TCCTTCACTATCGGAAGGAGACGACGATGGCCTTAACAACGGTGGTTATC
TCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTTGACCGCACTTCCAGC
CCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTCCTCCGACATCAGCGC
CGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAGTCAAGTTGCGAAATA
ATGAAGTAGAGACCATCCTGCTCACCGTCGATGACGACGCCGAGGTGCTG
GCGTCCAATTTTACACAACACCAGCACGCCCTCCCTCCCTCCCTCCAGGA
CGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGGACATGGCTCGCGAAA
TTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCAATGCGTGCCCATGTC
GCGGCATTGGAAGATAAATCAACATCAGCAGCAGCAGCAACAGCAGCGGC
TGCAGCATCAACCATGGCAACGATAGGAGGGGTTCAGAGAGATAAGGAGG
AGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATGGATAGCACCGAAAAT
CGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGAAACACAATTGATTCG
GCGATCAGATCGAATTATTTTGTTGGAAGAAGGGGCGTCAACGACCGCAG
CCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAGAGGCTGCGAGAGTCA
GAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAAGAGGACGGAGAGGGA
TGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCATGGCCGAGTCGAAGG
AAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGACGCCGAGGTGGAGCGC
GACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTGGGAATTGCGGGTGCT
GCAACAGGTGGATAAAACCCACGAGGATACGGATGAAGGGTTGACAATGG
TCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCGGCGTATGGAGAGATG
AGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCGCTGGCTGGAGGGGGT
GATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGAAGAAACTGAGAGAGA
GACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATGAGCAGAGAATTGATG
AAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAGGGTGGCGAGTCAGGA
TTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGAGGAGGAGGAGTCATT
TTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTGTTGTGGAGAGAGGAT
GAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCAAGGAGGAGAAGGAGG
CAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCACCTTCATCTTGGCAGA
AGCAGCACGCCACGATTTCCGCGATCGAAAGTGCTTCGTGCGCATGTAAG
TCACCAGCATCGCAGCAACAAAAGCTTCAGCATCAGCCGCCGCCGCGAGT
ACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCACATCGGGAAACCCGCG
CGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCCTCCTCCTCCTCCTCT
TCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTCGAAATCATACGGCCC
CGACATTCGCCGCATGGTTCATCTACCGCATTTTGAAGAAATGATTGAAG
CAGAGGAGGGAGACGAGACAGACGACATTTACCCCATCCCGTCTGAACGA
GCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTTCATTGCGTGAGTTGA
AGTTGGTTATTTAATTTTCTGCCGTTCCTACACTCATATAGAACTATCGC
ATGCAAGCTGACATCCTCTAGGACTTGCATGCGTGGGCAAGCTTTCCAAC
AAAAAAATGTTGCATATACTTACCCCTATTCTTGTCCGAGTTTTTCTAGC
GATTTTGACAGGTTTTTCATCAGGCAAAGTCCCCGTTATTCAGGATGTGA
AGAGGAAATGGGAGAGTGCGTGTGGGAGGTGGACAAAGCTTGAGTAGTGA
AAAGGGTGTTTTTCTAAAAGATAAAAAATGTTTAGGCAAAGGCAAGCTGG
AGGTGTGTGTGTGAGTGAGCAACCAGGAGGTACATGGCAAGAACTAGTAC
GGTTACAACTGCAGACCCATAAGGGAAAAAAGAAAATTTATTAACATCCA

Coding sequence (CDS) from alignment at chr26:415466..417815-

>NO26G01290.1 ID=NO26G01290.1|Name=NO26G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr26:415466..417815- (Nannochloropsis oceanica)
ATGAGCCGATCTCCTTCACTATCGGAAGGAGACGACGATGGCCTTAACAA
CGGTGGTTATCTCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTTGACC
GCACTTCCAGCCCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTCCTCC
GACATCAGCGCCGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAGTCAA
GTTGCGAAATAATGAAGTAGAGACCATCCTGCTCACCGTCGATGACGACG
CCGAGGTGCTGGCGTCCAATTTTACACAACACCAGCACGCCCTCCCTCCC
TCCCTCCAGGACGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGGACAT
GGCTCGCGAAATTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCAATGC
GTGCCCATGTCGCGGCATTGGAAGATAAATCAACATCAGCAGCAGCAGCA
ACAGCAGCGGCTGCAGCATCAACCATGGCAACGATAGGAGGGGTTCAGAG
AGATAAGGAGGAGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATGGATA
GCACCGAAAATCGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGAAACA
CAATTGATTCGGCGATCAGATCGAATTATTTTGTTGGAAGAAGGGGCGTC
AACGACCGCAGCCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAGAGGC
TGCGAGAGTCAGAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAAGAGG
ACGGAGAGGGATGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCATGGC
CGAGTCGAAGGAAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGACGCCG
AGGTGGAGCGCGACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTGGGAA
TTGCGGGTGCTGCAACAGGTGGATAAAACCCACGAGGATACGGATGAAGG
GTTGACAATGGTCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCGGCGT
ATGGAGAGATGAGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCGCTGG
CTGGAGGGGGTGATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGAAGAA
ACTGAGAGAGAGACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATGAGCA
GAGAATTGATGAAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAGGGTG
GCGAGTCAGGATTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGAGGAG
GAGGAGTCATTTTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTGTTGT
GGAGAGAGGATGAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCAAGGA
GGAGAAGGAGGCAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCACCTTC
ATCTTGGCAGAAGCAGCACGCCACGATTTCCGCGATCGAAAGTGCTTCGT
GCGCATGTAAGTCACCAGCATCGCAGCAACAAAAGCTTCAGCATCAGCCG
CCGCCGCGAGTACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCACATCG
GGAAACCCGCGCGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCCTCCT
CCTCCTCCTCTTCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTCGAAA
TCATACGGCCCCGACATTCGCCGCATGGTTCATCTACCGCATTTTGAAGA
AATGATTGAAGCAGAGGAGGGAGACGAGACAGACGACATTTACCCCATCC
CGTCTGAACGAGCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTTCATT
GCGTGA

Synonyms

Publications