NO26G01260, NO26G01260 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_008337920.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Malus domestica] >XP_008367930.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Malus domestica]) HSP 1 Score: 111.7 bits (278), Expect = 5.300e-21 Identity = 89/299 (29.77%), Postives = 125/299 (41.81%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F M ++LAL RDRQNMGRRY+E+F KR +YY A+A EV EG++ D Q AA+P S+ + E+ + +EILKMRGLPF++ K ++ FFE+F V D +H+ R DG+ TGEA+V F SA EA+ A KD+ T+GSRYVELF +TP+E R+ Sbjct: 78 GLDIVDVLLVNKGGRFSGEAFVVFAGPMQVELALQRDRQNMGRRYVEVFRCKRQEYYKAVAA--EV----------------------NYEGIY--------------------------------------DNDYQ--------------------------------------------------------AASPPPSKSKRFSDKEKMEYTEILKMRGLPFSAKKSEILEFFEEFKVVEDRVHIACRPDGKATGEAYVEFVSADEAKKAM-CKDKMTIGSRYVELFPSTPDEARRA 257
BLAST of NO26G01260 vs. NCBI_GenBank
Match: POO01183.1 (Splicing factor-like protein [Trema orientalis]) HSP 1 Score: 111.7 bits (278), Expect = 5.300e-21 Identity = 90/300 (30.00%), Postives = 122/300 (40.67%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVH-QEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F + + AL RDRQNMGRRY+E+F KR DYYNAIA EV EG++ +YH +P +R + +Q + +EILKMRGLPF+ TK D+ FF DF + D IH+ R DG+ TGEA+V F SA EA+ A KD+ T+GSRYVELF +TP+E R+ Sbjct: 73 GLDIVDVLLVNKNGRFSGEAFVVFAGAVQVDFALRRDRQNMGRRYVEVFRCKRQDYYNAIAA--EV----------------------NYEGIYDNDYH------------------------------------------------------------------------------------------------GSPPPTRSKRFSDKDQMEYTEILKMRGLPFSVTKSDISEFFGDFKLIEDRIHIACRPDGKATGEAYVEFDSAEEAKRAM-CKDKMTIGSRYVELFPSTPDEARRA 251
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_002521718.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Ricinus communis] >EEF40705.1 heterogeneous nuclear ribonucleoprotein, putative [Ricinus communis]) HSP 1 Score: 111.3 bits (277), Expect = 6.900e-21 Identity = 88/300 (29.33%), Postives = 126/300 (42.00%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQ-EYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F M ++ AL RDRQNMGRRY+E+F KR DYYNA+A EV EG++ +YH +P S+ + +Q + +EILKMRGLPF++ K ++ FF++F + D IH+ R DG+ TGEA+V FASA EA+ A +KD+ T+GSRYVELF +TP+E R+ Sbjct: 80 GLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAA--EV----------------------NYEGIYDTDYH------------------------------------------------------------------------------------------------GSPPPSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAM-SKDKMTIGSRYVELFPSTPDEARRA 258
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_019424310.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Lupinus angustifolius]) HSP 1 Score: 110.9 bits (276), Expect = 9.000e-21 Identity = 89/300 (29.67%), Postives = 122/300 (40.67%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVH-QEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F M ++ AL RDRQNMGRRY+E+F K+ DYYNA+A EV EG++ +YH +P SR + +Q + SEILKMRGLPF TK + FF+DF + D +H+ R DG+ TGEA+V F SA EA+ A KD+ T+GSRYVELF +TP+E R+ Sbjct: 81 GMSIVDVLLVNKSGRFSGEAFVVFAGPMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAA--EV----------------------NYEGIYDNDYH------------------------------------------------------------------------------------------------GSPPPSRSKRFSDKDQLEYSEILKMRGLPFLVTKSQIVEFFKDFKLLEDRVHIGCRPDGKATGEAYVEFVSAEEAKRAM-CKDKMTIGSRYVELFPSTPDEARRA 259
BLAST of NO26G01260 vs. NCBI_GenBank
Match: PON66552.1 (Splicing factor-like protein [Parasponia andersonii]) HSP 1 Score: 110.5 bits (275), Expect = 1.200e-20 Identity = 90/300 (30.00%), Postives = 122/300 (40.67%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVH-QEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F + + AL RDRQNMGRRY+E+F KR DYYNAIA EV EG++ +YH +P +R + +Q + +EILKMRGLPF+ TK D+ FF DF + D IH+ R DG+ TGEA+V F SA EA+ A KD+ T+GSRYVELF +TP+E R+ Sbjct: 73 GLDIVDVLLVNKNGRFSGEAFVVFAGAVQVDFALRRDRQNMGRRYVEVFRCKRQDYYNAIAA--EV----------------------NYEGIYDNDYH------------------------------------------------------------------------------------------------GSPPPTRLKRFSDKDQMEYTEILKMRGLPFSVTKSDISEFFGDFKLIEDRIHIACRPDGKATGEAYVEFDSAEEAKRAM-CKDKMTIGSRYVELFPSTPDEARRA 251
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_021848693.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Spinacia oleracea] >KNA11256.1 hypothetical protein SOVF_136900 isoform A [Spinacia oleracea]) HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20 Identity = 87/299 (29.10%), Postives = 122/299 (40.80%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV++++K GE V+ S + LAL RDRQNMGRRY+E+F K+ DYYNA+A + EG++ + + PG SR +Q + +EIL+MRGLP++ TK D+ FF DFNV D +H+ RADG+ TGEA+V F+S+ EA+SA KD+ T+GSRYVELF TPEE R+ Sbjct: 92 GLDIVDVLLVDKSGRFSGEAFVVLASAVQADLALNRDRQNMGRRYVEVFRCKKQDYYNAVAGKVKY------------------------EGMYD----------------------------------------------------------------------------------------------NDRPTSPPGRSRR--SVDKDQLEYTEILRMRGLPYSVTKADILKFFGDFNVAEDKVHIASRADGKATGEAYVEFSSSDEAKSAM-CKDKMTVGSRYVELFPATPEEARRA 269
BLAST of NO26G01260 vs. NCBI_GenBank
Match: KNA11257.1 (hypothetical protein SOVF_136900 isoform B [Spinacia oleracea]) HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20 Identity = 87/299 (29.10%), Postives = 122/299 (40.80%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV++++K GE V+ S + LAL RDRQNMGRRY+E+F K+ DYYNA+A + EG++ + + PG SR +Q + +EIL+MRGLP++ TK D+ FF DFNV D +H+ RADG+ TGEA+V F+S+ EA+SA KD+ T+GSRYVELF TPEE R+ Sbjct: 73 GLDIVDVLLVDKSGRFSGEAFVVLASAVQADLALNRDRQNMGRRYVEVFRCKKQDYYNAVAGKVKY------------------------EGMYD----------------------------------------------------------------------------------------------NDRPTSPPGRSRR--SVDKDQLEYTEILRMRGLPYSVTKADILKFFGDFNVAEDKVHIASRADGKATGEAYVEFSSSDEAKSAM-CKDKMTVGSRYVELFPATPEEARRA 250
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_021848694.1 (heterogeneous nuclear ribonucleoprotein F isoform X2 [Spinacia oleracea]) HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20 Identity = 87/299 (29.10%), Postives = 122/299 (40.80%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV++++K GE V+ S + LAL RDRQNMGRRY+E+F K+ DYYNA+A + EG++ + + PG SR +Q + +EIL+MRGLP++ TK D+ FF DFNV D +H+ RADG+ TGEA+V F+S+ EA+SA KD+ T+GSRYVELF TPEE R+ Sbjct: 49 GLDIVDVLLVDKSGRFSGEAFVVLASAVQADLALNRDRQNMGRRYVEVFRCKKQDYYNAVAGKVKY------------------------EGMYD----------------------------------------------------------------------------------------------NDRPTSPPGRSRR--SVDKDQLEYTEILRMRGLPYSVTKADILKFFGDFNVAEDKVHIASRADGKATGEAYVEFSSSDEAKSAM-CKDKMTVGSRYVELFPATPEEARRA 226
BLAST of NO26G01260 vs. NCBI_GenBank
Match: KYP35693.1 (hypothetical protein KK1_043261 [Cajanus cajan]) HSP 1 Score: 109.8 bits (273), Expect = 2.000e-20 Identity = 85/300 (28.33%), Postives = 120/300 (40.00%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQ-EYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F M ++ AL RDRQNMGRRY+E+F K+ DYYNA+A EG++ +YH ++P SR +Q + +EILKMRGLPF TK + FF+DF + D +H+ R DG+ TGEA+V F S EA+ A +KD+ T+GSRYVELF +TP+E R+ Sbjct: 72 GLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVASEINY------------------------EGIYDTDYH-----------------------------------------------------------------------------------------------GSSPPPSRSKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSTEEAKRAM-SKDKMTIGSRYVELFPSTPDEARRA 251
BLAST of NO26G01260 vs. NCBI_GenBank
Match: XP_018843382.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Juglans regia]) HSP 1 Score: 109.8 bits (273), Expect = 2.000e-20 Identity = 87/300 (29.00%), Postives = 124/300 (41.33%), Query Frame = 0 Query: 12 GIGVLDVVMMNK-----GECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVH-QEYHAAQLYHXXXXXXXXXXXXXXXXXXXXXXLPHQLLQQDVQMPQPHXXXXGIVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARS 306 G+ ++DV+++NK GE V+F M ++ AL RDRQNMGRRY+E+F KR DYY+A+A EV EG++ +YH +P +R + +Q + +EILKMRGLPF+ K ++ FF DF + + IH+ R DG+ TGEA+V FASA EA+ A +KD+ T+GSRYVELF +TP+E R+ Sbjct: 80 GLDIVDVLLVNKNGRFSGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCKRQDYYSAVAA--EV----------------------NYEGIYDNDYH------------------------------------------------------------------------------------------------GSPPPARSKRFSDKDQLEYTEILKMRGLPFSVKKTEIGEFFRDFKLMEERIHIACRPDGKATGEAYVEFASAEEAKRAM-SKDKMTIGSRYVELFPSTPDEARRA 258 The following BLAST results are available for this feature:
BLAST of NO26G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G01260 ID=NO26G01260|Name=NO26G01260|organism=Nannochloropsis oceanica|type=gene|length=3750bpback to top protein sequence of NO26G01260.1 >NO26G01260.1-protein ID=NO26G01260.1-protein|Name=NO26G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bpback to top protein sequence of NO26G01260.2 >NO26G01260.2-protein ID=NO26G01260.2-protein|Name=NO26G01260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=396bpback to top Synonyms
Publications
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