NO26G01260.2, NO26G01260.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01260.2
Unique NameNO26G01260.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3490
Alignment locationchr26:404373..408122 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:404373..408122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01260.2 vs.
Match: EWM23160.1 (heterogeneous nuclear [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 2.900e-51
Identity = 146/300 (48.67%), Postives = 188/300 (62.67%), Query Frame = 0 
Query:   12 GIGVLDVVMMNKGECMVLFRSVMDMQLALGRDRQNMGRRYIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVHQEYHAAQLYHQHYHHHNHQHPHQQQQHAHVHCLPHQLLQQDVQMPQPHQQQQGIVSSSHSRSQSHAAHNAHHAPSSSTNSKNKNNNDNNHHKNSLQGQAAATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDNIHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPEELARSMIGQQY 312
            G+GVLDVVM +KGEC+VLF ++MDMQL LG+D QNMGRRYIEIF+AKR DYY+A+ Q  E G +RR H        + R    + EG   +++AA  Y     +  +QHP   Q H   H L H+ LQ       P+QQ             S+          ++T   +           + QGQ  A P + REVAIAATE+AQNS ILK+RGLPFT +  D++ FFE F V  D+I ++LRADGR+TGEAFVSF+S  +ARSAQ++KDRS LG+RYVELF TTPEELAR++ GQQ+
Sbjct:  120 GMGVLDVVMTSKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAVRQRTEEGYYRRLHFRGDVHGFAWRTMRSQ-EGSFHDFNAALFYS----NQPYQHP---QAHLQAHTL-HRALQMT-----PYQQP------------SYQTVPGAGLGPATTGLADTERQGETGKLAARQGQNVAAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQH 393
The following BLAST results are available for this feature:
BLAST of NO26G01260.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23160.12.900e-5148.67heterogeneous nuclear [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01260NO26G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01260.2NO26G01260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01260.2.cds1NO26G01260.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01260.2.cds2NO26G01260.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01260.2.cds3NO26G01260.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01260.2.cds4NO26G01260.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01260.2 ID=NO26G01260.2|Name=NO26G01260.2|organism=Nannochloropsis oceanica|type=mRNA|length=3490bp
GTGCAGTAGAATGCTTTCCCCTCCTCCCAAGAACCGACGCAAGCGTGCGT
GGCACGCGGCTGTTTTGTTTACTGCCGCCGCATCCACCTATCCCCCCCCC
TCCTTTCCCTCCTTCCTACCCGCCCATTCACTGCGCCCCACACCCACACG
CCCACAGCTGATCCACCCGCGCGTCAACCTGGAGGTGTACGACAGTATCG
TGGCCACACCAAAGGAACAGGGGGGCGCTGAGGCAAGCGTGCGTGGCACG
TAGCTGTTTTGTTTACTGCCGCCGCACCCAAAAACCAGTCAAAGTCGCTA
GAAAAACTCGGACAAGGGATAAGGGGTGAATAGGCAACAATTTCTTGTTG
GAAGGCTCCCCCTCGTATGCAAGTCCTAGAGGACGCAGGTTGCATGCGAT
AGTTCTAGAGGGATGTAGGAACGGCAAAAAGAACTAAAGAACCAATACAT
ATATATATTTATCACATATCACATATACACATACATTACATCACATCATA
TCACACATCACACATTTCACACATTCACACATACACACATTTGCTCCTCA
TTATGGGAATACTGTTTCTGGGCTCTACATCAGCTGTTTCAGAGGCAGTG
CTGTCGGCTTATCGTTGAGGAGGGACTCATGGAGGTCGATAATGCCAGCC
TCGCAGGGTATCGTTTTCACCACGTCGGAGGCTGAGAGGCAGGTCTGGTC
GCCATTTCCTTCGCCGTGTGACACAAGCTGTCCACCATGATATGAAAACT
ATGCCAGCGCCGGTAGACTAATTCCTCCACAAGGTCATCAATGCATGGAG
AATGGACTTGCGTCAACGGGGATTGACTCGACAAGGTTCCATTTGTTCGA
TTTTTGAGCTGTGCACGAGGAGAGGAGATGAAAGAGCCGTTCTTGAGCCG
TTCTTGTTGGCGAATTAAGTAGTTTCTCTCCTTATGAATTTCCCCCGGAT
TCCGAGCACGCACGTTGTGAGGATCGCCGGTGCGATCGGGCGAACGCATT
GCTAAATAATTTGGCCACTTGGCCCCAGGGCGACCTGCTTCCACCCTGTC
TTCTCGTGACAACTTGGAACAATATGATGAATATGAGGCCTGTGTTTGAC
CGTCCCGCCCTTGACCAAATACGCTTTCCGAAACCACCGTCTTCAGAATA
GGGGTTGCTTCCGCAGCGGCACATTCCCCAGCAGGGCACAAGGCAGCCTC
AGCCCTTCGACTGCTCATCATGGAACGCCATTACGCTCATAGTGTTGTGA
ACCCCTCCGACTACGGCGCTGTCGACTATACTTCCCTCCAGGAGCAAATG
GTGGTGAGTCAGAATGCGAGCGAATCCTTCGGCCATTTATGTCATGTAGT
ACGCAGAGACCCTCAGATGAATTGCTTTTTTAGCCACAAATTCACCCCCT
CACCTGTCCTTTATACGTCCTTCCCCAAAACACAGTACCGCACGGGACCC
GGCCAGCATATAGTGGGGTCTGCCCTCGTGTCCGTCCAAGGCATGCCCCC
CCATGTCTGGCCCTCCGAGACTCACGCTCTCCACCTTGCAGCTGGTAAGT
GACACCGCAGGCTATGTTTTGGGAGAGGTATGACGTATGATCAGGAAGGA
TTTGCACGCACTTTCGACCAGGCTGCTGGGTGTGTGCCTCCCCCCATACA
AATGTGCGGTCTCACCAACCATCCTCTTGTTGCCTGCGTAGGGAATTCCC
CGAGCACATCGGCGGCCAGTGGACACGTTGAATCAAGCAGCGGCAATGGC
CAGGAGATGTTGGAGGATTTTTTGGGGCCCTTCCCAGTCGTTCGCCTGCG
TGGTCTACCGTTCGAGGCGCAAGTCCGGGACGTCATCCTCTTCTTCCAGG
TCAGCAGTGGTGTGGCCCATGTAAAGACTGGTTGGGAATTTACTAGTCCT
CATGTCTGCACATTCACTCAACACACGACAACAGGGGATCGGGGTGCTGG
ACGTGGTGATGATGAACAAGGGTGAGTGCATGGTCCTCTTTAGGTCAGTC
ATGGACATGCAGCTCGCATTGGGCAGGGACAGGCAAAACATGGGACGGCG
GTACATCGAGATCTTCATCGCCAAGCGCTTCGACTACTACAACGCCATCG
CCCAAAATTGGGAGGTCGGTCGACATCGTCGGCCGCATCATCACTACCAC
CCTGATGCCCTCTCGGAACGAGCGCCCGGCGGGGAACGAGAGGGTGTGCA
TCAAGAGTACCATGCTGCCCAGCTGTACCACCAGCATTACCACCACCACA
ACCACCAGCACCCTCATCAGCAGCAACAGCACGCACATGTCCACTGCCTT
CCCCATCAGCTCCTGCAGCAGGATGTCCAGATGCCGCAACCGCACCAACA
GCAACAGGGCATTGTCTCCTCCAGCCACAGCCGCAGCCAGAGTCACGCCG
CCCACAACGCACACCATGCCCCCAGCAGTAGCACCAACAGTAAGAACAAA
AACAACAACGATAACAACCACCACAAAAACTCCTTACAAGGCCAAGCCGC
AGCCACGCCGGGTGTTTCGAGAGAAGTCGCCATCGCCGCGACGGAGCAGG
CGCAGAACTCTGAGATCCTCAAGATGCGCGGTCTGCCCTTCACCTCCACC
AAGCTTGATGTCCAGGTCTTTTTTGAAGACTTCAATGTGCAGCTGGACAA
CATCCATGTGGTCCTGCGCGCCGACGGCCGAATGACGGGGGAGGCCTTCG
TCTCCTTTGCGAGCGCCATGGAGGCCCGCAGTGCCCAAAAGGCCAAGGAC
CGGTCCACGCTCGGGAGCCGGTACGTAGAGCTATTTCGAACAACGCCCGA
GGAGCTAGCTCGGTCCATGATCGGGCAGCAGTACCACCATCAGCAGGAGC
AGCAGCAGCAGCAGCAGCAAGAGCAGCAACGGCAGCAGCAGGGGGCAACG
GCTGCTGGCAATAGCGGCAGTACCGTGGAGACTTGCAACACTAGCAGTAC
CCGTAGCGAGACGAATGACACGACGACTAGCTCCAGCAGTGCTGGCAACA
TCAATGACAATAACGAAGCCTTCCTCAAGAAGGACGACGAAGACGACCTG
GCCGCCGCGGCCGCCGATGGAGCCACCCTCACTGTCTAGTCAATTAGGAA
AGTGAAAACTGGACCAACGCCTTTGGGCTTATGCGATTCCGGGGAGAACA
CTTAAAAAGCACTAAATGTGTTCAGAAGATTTGTAGGACATGTTCAGGTT
TTGTGACGATTTACCTACCACGAATAGACAACGGGAGAGGGCGAATTGAG
ACTGACATGCAGAGAGAAAAATATAAATGGCATCTGCACCCTTTCCATAG
ACAAAAGAAATCAGGACATAGATCACCATGAACCACGTAAGCAGGAGGGC
CACATTTACAACCAATTCAATATGTGACTCGCATACACAAGAATGCAAAA
GGATAAAATGAGGGACCACAACACAGTACATGCCAGACATAGGAGTATGA
ATAAATGGCCAATCTAATCTAAAGTATTTCAATCATCGAT
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protein sequence of NO26G01260.2

>NO26G01260.2-protein ID=NO26G01260.2-protein|Name=NO26G01260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSAHSLNTRQQGIGVLDVVMMNKGECMVLFRSVMDMQLALGRDRQNMGRR
YIEIFIAKRFDYYNAIAQNWEVGRHRRPHHHYHPDALSERAPGGEREGVH
QEYHAAQLYHQHYHHHNHQHPHQQQQHAHVHCLPHQLLQQDVQMPQPHQQ
QQGIVSSSHSRSQSHAAHNAHHAPSSSTNSKNKNNNDNNHHKNSLQGQAA
ATPGVSREVAIAATEQAQNSEILKMRGLPFTSTKLDVQVFFEDFNVQLDN
IHVVLRADGRMTGEAFVSFASAMEARSAQKAKDRSTLGSRYVELFRTTPE
ELARSMIGQQYHHQQEQQQQQQQEQQRQQQGATAAGNSGSTVETCNTSST
RSETNDTTTSSSSAGNINDNNEAFLKKDDEDDLAAAAADGATLTV*
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mRNA from alignment at chr26:404373..408122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01260.2 ID=NO26G01260.2|Name=NO26G01260.2|organism=Nannochloropsis oceanica|type=mRNA|length=3750bp|location=Sequence derived from alignment at chr26:404373..408122+ (Nannochloropsis oceanica)
GTGCAGTAGAATGCTTTCCCCTCCTCCCAAGAACCGACGCAAGCGTGCGT
GGCACGCGGCTGTTTTGTTTACTGCCGCCGCATCCACCTATCCCCCCCCC
TCCTTTCCCTCCTTCCTACCCGCCCATTCACTGCGCCCCACACCCACACG
CCCACAGCTGATCCACCCGCGCGTCAACCTGGAGGTGTACGACAGTATCG
TGGCCACACCAAAGGAACAGGGGGGCGCTGAGGCAAGCGTGCGTGGCACG
TAGCTGTTTTGTTTACTGCCGCCGCACCCAAAAACCAGTCAAAGTCGCTA
GAAAAACTCGGACAAGGGATAAGGGGTGAATAGGCAACAATTTCTTGTTG
GAAGGCTCCCCCTCGTATGCAAGTCCTAGAGGACGCAGGTTGCATGCGAT
AGTTCTAGAGGGATGTAGGAACGGCAAAAAGAACTAAAGAACCAATACAT
ATATATATTTATCACATATCACATATACACATACATTACATCACATCATA
TCACACATCACACATTTCACACATTCACACATACACACATTTGCTCCTCA
TTATGGGAATACTGTTTCTGGGCTCTACATCAGCTGTTTCAGAGGCAGTG
CTGTCGGCTTATCGTTGAGGAGGGACTCATGGAGGTCGATAATGCCAGCC
TCGCAGGGTATCGTTTTCACCACGTCGGAGGCTGAGAGGCAGGTCTGGTC
GCCATTTCCTTCGCCGTGTGACACAAGCTGTCCACCATGATATGAAAACT
ATGCCAGCGCCGGTAGACTAATTCCTCCACAAGGTCATCAATGCATGGAG
AATGGACTTGCGTCAACGGGGATTGACTCGACAAGGTTCCATTTGTTCGA
TTTTTGAGCTGTGCACGAGGAGAGGAGATGAAAGAGCCGTTCTTGAGCCG
TTCTTGTTGGCGAATTAAGTAGTTTCTCTCCTTATGAATTTCCCCCGGAT
TCCGAGCACGCACGTTGTGAGGATCGCCGGTGCGATCGGGCGAACGCATT
GCTAAATAATTTGGCCACTTGGCCCCAGGGCGACCTGCTTCCACCCTGTC
TTCTCGTGACAACTTGGAACAATATGATGAATATGAGGCCTGTGTTTGAC
CGTCCCGCCCTTGACCAAATACGCTTTCCGAAACCACCGTCTTCAGAATA
GGGGTTGCTTCCGCAGCGGCACATTCCCCAGCAGGGCACAAGGCAGCCTC
AGCCCTTCGACTGCTCATCATGGAACGCCATTACGCTCATAGTGTTGTGA
ACCCCTCCGACTACGGCGCTGTCGACTATACTTCCCTCCAGGAGCAAATG
GTGGTGAGTCAGAATGCGAGCGAATCCTTCGGCCATTTATGTCATGTAGT
ACGCAGAGACCCTCAGATGAATTGCTTTTTTAGCCACAAATTCACCCCCT
CACCTGTCCTTTATACGTCCTTCCCCAAAACACAGTACCGCACGGGACCC
GGCCAGCATATAGTGGGGTCTGCCCTCGTGTCCGTCCAAGGCATGCCCCC
CCATGTCTGGCCCTCCGAGACTCACGCTCTCCACCTTGCAGCTGGTAAGT
GACACCGCAGGCTATGTTTTGGGAGAGGTATGACGTATGATCAGGAAGGA
TTTGCACGCACTTTCGACCAGGCTGCTGGGTGTGTGCCTCCCCCCATACA
AATGTGCGGTCTCACCAACCATCCTCTTGTTGCCTGCGTAGGGAATTCCC
CGAGCACATCGGCGGCCAGTGGACACGTTGAATCAAGCAGCGGCAATGGC
CAGGAGATGTTGGAGGATTTTTTGGGGCCCTTCCCAGTCGTTCGCCTGCG
TGGTCTACCGTTCGAGGCGCAAGTCCGGGACGTCATCCTCTTCTTCCAGG
TCAGCAGTGGTGTGGCCCATGTAAAGACTGGTTGGGAATTTACTAGTCCT
CATGTCTGCACATTCACTCAACACACGACAACAGGGGATCGGGGTGCTGG
ACGTGGTGATGATGAACAAGGGTGAGTGCATGGTCCTCTTTAGGTCAGTC
ATGGACATGCAGCTCGCATTGGGCAGGGACAGGTAAGGCAGCTGCTCTAC
AAAGGAAAGGGGAGAAATTTGCTCGTCCACACATGAATTTCGTTAATTTC
GGTCTACTTTCTCTCTCTTCAATATTCCTCATTGGCACTGTAGGCAAAAC
ATGGGACGGCGGTACATCGAGATCTTCATCGCCAAGCGCTTCGACTACTA
CAACGCCATCGCCCAAAATTGGGAGGTCGGTCGACATCGTCGGTAAGAGC
CCAGTCAAAGGGATGGATGTGAAAATCTATTGCTTTTGATTCGCGCAATC
TCTTCTCCTTATACAGGCCGCATCATCACTACCACCCTGATGCCCTCTCG
GAACGAGCGCCCGGCGGGGAACGAGAGGGTGTGCATCAAGAGTACCATGC
TGCCCAGCTGTACCACCAGCATTACCACCACCACAACCACCAGCACCCTC
ATCAGCAGCAACAGCACGCACATGTCCACTGCCTTCCCCATCAGCTCCTG
CAGCAGGATGTCCAGATGCCGCAACCGCACCAACAGCAACAGGGCATTGT
CTCCTCCAGCCACAGCCGCAGCCAGAGTCACGCCGCCCACAACGCACACC
ATGCCCCCAGCAGTAGCACCAACAGTAAGAACAAAAACAACAACGATAAC
AACCACCACAAAAACTCCTTACAAGGCCAAGCCGCAGCCACGCCGGGTGT
TTCGAGAGAAGTCGCCATCGCCGCGACGGAGCAGGCGCAGAACTCTGAGA
TCCTCAAGATGCGCGGTCTGCCCTTCACCTCCACCAAGCTTGATGTCCAG
GTCTTTTTTGAAGGTAAACACGTAGAAAAGTGGTGAGCTCAATGCTGGGG
TATCACTCACTCTCCATCTTCCCTTCCCTCCTCCGCAGACTTCAATGTGC
AGCTGGACAACATCCATGTGGTCCTGCGCGCCGACGGCCGAATGACGGGG
GAGGCCTTCGTCTCCTTTGCGAGCGCCATGGAGGCCCGCAGTGCCCAAAA
GGCCAAGGACCGGTCCACGCTCGGGAGCCGGTACGTAGAGCTATTTCGAA
CAACGCCCGAGGAGCTAGCTCGGTCCATGATCGGGCAGCAGTACCACCAT
CAGCAGGAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCAACGGCAGCAGCA
GGGGGCAACGGCTGCTGGCAATAGCGGCAGTACCGTGGAGACTTGCAACA
CTAGCAGTACCCGTAGCGAGACGAATGACACGACGACTAGCTCCAGCAGT
GCTGGCAACATCAATGACAATAACGAAGCCTTCCTCAAGAAGGACGACGA
AGACGACCTGGCCGCCGCGGCCGCCGATGGAGCCACCCTCACTGTCTAGT
CAATTAGGAAAGTGAAAACTGGACCAACGCCTTTGGGCTTATGCGATTCC
GGGGAGAACACTTAAAAAGCACTAAATGTGTTCAGAAGATTTGTAGGACA
TGTTCAGGTTTTGTGACGATTTACCTACCACGAATAGACAACGGGAGAGG
GCGAATTGAGACTGACATGCAGAGAGAAAAATATAAATGGCATCTGCACC
CTTTCCATAGACAAAAGAAATCAGGACATAGATCACCATGAACCACGTAA
GCAGGAGGGCCACATTTACAACCAATTCAATATGTGACTCGCATACACAA
GAATGCAAAAGGATAAAATGAGGGACCACAACACAGTACATGCCAGACAT
AGGAGTATGAATAAATGGCCAATCTAATCTAAAGTATTTCAATCATCGAT
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Coding sequence (CDS) from alignment at chr26:404373..408122+

>NO26G01260.2 ID=NO26G01260.2|Name=NO26G01260.2|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr26:404373..408122+ (Nannochloropsis oceanica)
ATGTCTGCACATTCACTCAACACACGACAACAGGGGATCGGGGTGCTGGA
CGTGGTGATGATGAACAAGGGTGAGTGCATGGTCCTCTTTAGGTCAGTCA
TGGACATGCAGCTCGCATTGGGCAGGGACAGGCAAAACATGGGACGGCGG
TACATCGAGATCTTCATCGCCAAGCGCTTCGACTACTACAACGCCATCGC
CCAAAATTGGGAGGTCGGTCGACATCGTCGGCCGCATCATCACTACCACC
CTGATGCCCTCTCGGAACGAGCGCCCGGCGGGGAACGAGAGGGTGTGCAT
CAAGAGTACCATGCTGCCCAGCTGTACCACCAGCATTACCACCACCACAA
CCACCAGCACCCTCATCAGCAGCAACAGCACGCACATGTCCACTGCCTTC
CCCATCAGCTCCTGCAGCAGGATGTCCAGATGCCGCAACCGCACCAACAG
CAACAGGGCATTGTCTCCTCCAGCCACAGCCGCAGCCAGAGTCACGCCGC
CCACAACGCACACCATGCCCCCAGCAGTAGCACCAACAGTAAGAACAAAA
ACAACAACGATAACAACCACCACAAAAACTCCTTACAAGGCCAAGCCGCA
GCCACGCCGGGTGTTTCGAGAGAAGTCGCCATCGCCGCGACGGAGCAGGC
GCAGAACTCTGAGATCCTCAAGATGCGCGGTCTGCCCTTCACCTCCACCA
AGCTTGATGTCCAGGTCTTTTTTGAAGACTTCAATGTGCAGCTGGACAAC
ATCCATGTGGTCCTGCGCGCCGACGGCCGAATGACGGGGGAGGCCTTCGT
CTCCTTTGCGAGCGCCATGGAGGCCCGCAGTGCCCAAAAGGCCAAGGACC
GGTCCACGCTCGGGAGCCGGTACGTAGAGCTATTTCGAACAACGCCCGAG
GAGCTAGCTCGGTCCATGATCGGGCAGCAGTACCACCATCAGCAGGAGCA
GCAGCAGCAGCAGCAGCAAGAGCAGCAACGGCAGCAGCAGGGGGCAACGG
CTGCTGGCAATAGCGGCAGTACCGTGGAGACTTGCAACACTAGCAGTACC
CGTAGCGAGACGAATGACACGACGACTAGCTCCAGCAGTGCTGGCAACAT
CAATGACAATAACGAAGCCTTCCTCAAGAAGGACGACGAAGACGACCTGG
CCGCCGCGGCCGCCGATGGAGCCACCCTCACTGTCTAG
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Synonyms
Publications