NO26G01220, NO26G01220 (gene) Nannochloropsis oceanica

Overview
NameNO26G01220
Unique NameNO26G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1015
Alignment locationchr26:395476..396490 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:395476..396490 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO26G01220 vs. NCBI_GenBank
Match: OWZ21099.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 65.1 bits (157), Expect = 2.300e-7
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 0
Query:   20 VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNR 156
            +Y++LL +A++LP+ K+ ++LEQIR+ FR H   TD + VS ++++A S+LGYLK+VTP+                   TG R Y +Y++G+ RV            + W   +M+   ++RH   L R  F + +
Sbjct:    7 LYKKLLRLAQSLPEPKRQTSLEQIRREFRGHKDVTDPREVSAMIQRAQSSLGYLKIVTPRSESN---------------TGVRRY-IYRNGQ-RVDAAEFEVKGEENARWKTQDMEA-GLKRHHQLLRRQHFMDRK 124          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_012898637.1 (uncharacterized protein [Blastocystis hominis] >CBK24589.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 63.2 bits (152), Expect = 8.800e-7
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   20 VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKR 81
            +Y+ L+  A+ LP+ K+  AL++IR  FREHAGETDA ++ ++   A S L +LKMVTP+R
Sbjct:    7 LYKELIRTARLLPEAKRIPALQEIRTKFREHAGETDAAKIEEMKHDAESRLKFLKMVTPRR 67          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_008605554.1 (hypothetical protein SDRG_01782 [Saprolegnia diclina VS20] >EQC40710.1 hypothetical protein SDRG_01782 [Saprolegnia diclina VS20])

HSP 1 Score: 63.2 bits (152), Expect = 8.800e-7
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 0
Query:   21 YRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVR--RHQHQLSR 149
            Y++LL +AK++PQ+++A  LE++R  FR H G    + + +LL +A S + YLK+VTPK+      ++SS  G         ++ VYK+G+ R+       D       D + M   +V+  R QH + R
Sbjct:    9 YKKLLKLAKSVPQEQRAQTLEKVRHEFRAHEGAATPEELDQLLRKAQSKISYLKIVTPKK------SSSSTQG---------SHFVYKNGQ-RIDGRELSADSATIKTHDYNAMMTKHVQLVRRQHFMDR 122          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_024585037.1 (Complex 1 LYR protein [Plasmopara halstedii] >CEG48668.1 Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 63.2 bits (152), Expect = 8.800e-7
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 0
Query:   12 ASSTNALR-VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQ 144
            +++T  LR +Y++LL +A+NLPQ K+ S+++QIR+ FR H   TD + VS+ +++A S+L YLK++TP+                  +  G    +Y++G+ RV      +     + W   +M+    R HQ
Sbjct:    2 SNATRELRPLYKKLLRLAQNLPQSKRQSSIDQIRREFRCHEDLTDPKEVSEFIQRAQSSLSYLKIITPRT----------------ESNTGVQRFIYRNGQ-RVNAADFEKKGNENARWKTQDMEAGYKRHHQ 117          
The following BLAST results are available for this feature:
BLAST of NO26G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
OWZ21099.12.300e-732.35putative mitochondrial protein [Phytophthora megak... [more]
XP_012898637.18.800e-749.18uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_008605554.18.800e-732.31hypothetical protein SDRG_01782 [Saprolegnia dicli... [more]
XP_024585037.18.800e-730.83Complex 1 LYR protein [Plasmopara halstedii] >CEG4... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005949NSK005949Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01220.1NO26G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177744gene_7950Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g17gene7289Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01220.1NO26G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01220 ID=NO26G01220|Name=NO26G01220|organism=Nannochloropsis oceanica|type=gene|length=1015bp
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGgtgagtgagtgtcgaaggccgggggag
ggggactatcaggggacagactcgggcacaagatgccgggggacaatgcg
acggtagttttcattcagatacggcagtggtatttgttgaaggtactagt
taatctcccctctatatgcgggggcttactaccaccgagcttcccccaca
gatccttttgtacgaaggtgagaaacggatccataagggtcggtagctag
ctcaatccttcctagcgccgcgaggattaaggaagctcgaattcgtcgac
ggggacagcgattcactttttgttgtttttcctaactcactccaacggtt
ttggcatcaaaataaggggaagaattcctcaatttttatcaccataaatg
agaggactgatagcctcgaggagctcctacgaccacaaacgaatagatat
ctatcattatgagaaaatagaaggcgctcgaaaatatctctcgactttac
gcatgcctaagactacctgccttctttccttcccccccccggaaaacagG
GTGAGCAAGCTGTTGGAGCAGGCTTCTTCTACGCTCGGGTATCTAAAGAT
GGTGACTCCAAAGCGAAGGATAGGTGCCACTGCAAACGCCTCCTCGGGCG
ACGGCGGAGAAGGAAGAGCGACAGGGGGACGGACCTATCTGGTGTACAAG
GACGGCGAGGGGCGGGTAACGGAAGAGGCTGCGCGACGGGATAAATTGGC
TTATTCCAACTGGGACGGCAGCAACATGGACCCCGACAATGTTCGTCGGC
ACCAACACCAACTCAGCCGGATGGGGTTCCGGAATAACAGACATGCCAAG
GGCGGCATCTTTTGA
back to top

protein sequence of NO26G01220.1

>NO26G01220.1-protein ID=NO26G01220.1-protein|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQDKQASALEQIRQGFREH
AGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATG
GRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMG
FRNNRHAKGGIF*
back to top
Synonyms
Publications