NO26G01220.1, NO26G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01220.1
Unique NameNO26G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr26:395476..396490 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:395476..396490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01220.1 vs.
Match: EWM23165.1 (hypothetical protein Naga_100043g17 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 1.500e-25
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 0 
Query:   63 LEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNRHAKGGIF 163
            +EQASS+LGYL+M+TPKR    + +    D   G  + GRTY+VYKDG G V+ E   R+K AYSNWDGS+MDPD VRRHQHQL RMGFR+N HAKGGIF
Sbjct:    1 MEQASSSLGYLRMITPKR--WKSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF 98
The following BLAST results are available for this feature:
BLAST of NO26G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23165.11.500e-2563.00hypothetical protein Naga_100043g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01220NO26G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01220.1NO26G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01220.1.cds1NO26G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01220.1.cds2NO26G01220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01220.1 ID=NO26G01220.1|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGGGTGAGCAAGCTGTTGGAGCAGGCTTC
TTCTACGCTCGGGTATCTAAAGATGGTGACTCCAAAGCGAAGGATAGGTG
CCACTGCAAACGCCTCCTCGGGCGACGGCGGAGAAGGAAGAGCGACAGGG
GGACGGACCTATCTGGTGTACAAGGACGGCGAGGGGCGGGTAACGGAAGA
GGCTGCGCGACGGGATAAATTGGCTTATTCCAACTGGGACGGCAGCAACA
TGGACCCCGACAATGTTCGTCGGCACCAACACCAACTCAGCCGGATGGGG
TTCCGGAATAACAGACATGCCAAGGGCGGCATCTTTTGA
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protein sequence of NO26G01220.1

>NO26G01220.1-protein ID=NO26G01220.1-protein|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQDKQASALEQIRQGFREH
AGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATG
GRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMG
FRNNRHAKGGIF*
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mRNA from alignment at chr26:395476..396490+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01220.1 ID=NO26G01220.1|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp|location=Sequence derived from alignment at chr26:395476..396490+ (Nannochloropsis oceanica)
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGGTGAGTGAGTGTCGAAGGCCGGGGGAG
GGGGACTATCAGGGGACAGACTCGGGCACAAGATGCCGGGGGACAATGCG
ACGGTAGTTTTCATTCAGATACGGCAGTGGTATTTGTTGAAGGTACTAGT
TAATCTCCCCTCTATATGCGGGGGCTTACTACCACCGAGCTTCCCCCACA
GATCCTTTTGTACGAAGGTGAGAAACGGATCCATAAGGGTCGGTAGCTAG
CTCAATCCTTCCTAGCGCCGCGAGGATTAAGGAAGCTCGAATTCGTCGAC
GGGGACAGCGATTCACTTTTTGTTGTTTTTCCTAACTCACTCCAACGGTT
TTGGCATCAAAATAAGGGGAAGAATTCCTCAATTTTTATCACCATAAATG
AGAGGACTGATAGCCTCGAGGAGCTCCTACGACCACAAACGAATAGATAT
CTATCATTATGAGAAAATAGAAGGCGCTCGAAAATATCTCTCGACTTTAC
GCATGCCTAAGACTACCTGCCTTCTTTCCTTCCCCCCCCCGGAAAACAGG
GTGAGCAAGCTGTTGGAGCAGGCTTCTTCTACGCTCGGGTATCTAAAGAT
GGTGACTCCAAAGCGAAGGATAGGTGCCACTGCAAACGCCTCCTCGGGCG
ACGGCGGAGAAGGAAGAGCGACAGGGGGACGGACCTATCTGGTGTACAAG
GACGGCGAGGGGCGGGTAACGGAAGAGGCTGCGCGACGGGATAAATTGGC
TTATTCCAACTGGGACGGCAGCAACATGGACCCCGACAATGTTCGTCGGC
ACCAACACCAACTCAGCCGGATGGGGTTCCGGAATAACAGACATGCCAAG
GGCGGCATCTTTTGA
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Coding sequence (CDS) from alignment at chr26:395476..396490+

>NO26G01220.1 ID=NO26G01220.1|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr26:395476..396490+ (Nannochloropsis oceanica)
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGGGTGAGCAAGCTGTTGGAGCAGGCTTC
TTCTACGCTCGGGTATCTAAAGATGGTGACTCCAAAGCGAAGGATAGGTG
CCACTGCAAACGCCTCCTCGGGCGACGGCGGAGAAGGAAGAGCGACAGGG
GGACGGACCTATCTGGTGTACAAGGACGGCGAGGGGCGGGTAACGGAAGA
GGCTGCGCGACGGGATAAATTGGCTTATTCCAACTGGGACGGCAGCAACA
TGGACCCCGACAATGTTCGTCGGCACCAACACCAACTCAGCCGGATGGGG
TTCCGGAATAACAGACATGCCAAGGGCGGCATCTTTTGA
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Synonyms
Publications