NO26G00870, NO26G00870 (gene) Nannochloropsis oceanica

Overview
NameNO26G00870
Unique NameNO26G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4551
Alignment locationchr26:285985..290535 -

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Properties
Property NameValue
DescriptionProtein phosphatase 2C, manganese/magnesium aspartate binding site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:285985..290535 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0004722protein serine/threonine phosphatase activity
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036457PPM-type_dom_sf
IPR015655PP2C
IPR001932PPM-type_phosphatase_dom
Homology
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BLAST of NO26G00870 vs. NCBI_GenBank
Match: EWM23132.1 (Protein phosphatase 2C, manganese/magnesium aspartate binding site [Nannochloropsis gaditana])

HSP 1 Score: 704.5 bits (1817), Expect = 4.300e-199
Identity = 342/481 (71.10%), Postives = 401/481 (83.37%), Query Frame = 0 
Query:  455 HIRVHSLTLKELALVDENPSAMLAPSLTPPSVPGSIVKCTAGYGKSGRGKAYRGPAQQVRGPVVVYGEDVLAEAELLLPASVGGARVGGAEGREGGQVAAVEAPKWVRAMGVFDGHGMHGREAARVAAERYVDDMRRTTMQTLGALMAGDVDKVRKVEFDRYRLMEAHLDKELGSPTGGTTATTVQFLACGGKAWGVVSNVGDSPVLLVDNATGRVQVLTGRHSWDNPEERQKYLDRCQALGVVPREVVYGRINCGGMRMTDAKGGEEPLMMYREGTSEVCVETREWLCKQVEKRYRNSIGGSQSTRRMVLEKLTVKEDGKEGGEWEVYKALEEHAHTNWGATILVDGEGKIQMSRSLGDSQEKKTAYIWAEPDVSVWELGPGEDWSVIACSDGVGDLWYFHELGAMAADFFAGKDQEGSEGGREGEVQELATLILEQTIERGEVAPGYGIAPRVNSVVRGEGLKRPLWDDLSVHCARIQT 936
            H+RVH L+L+ELALVDE+P+ + +P L+ P   G ++ C  G+GK+GR     GPA+QV+GP+V+YGEDVLAEAEL+LP   G  R  G EGR          P+WVR MGVFDGHG+HG+EAAR+AAE ++ DMRRTTMQTL AL+AGDV  VR+VE +RYR +E +L+KEL SPTGGTT +TVQ LA  GK +GVVSNVGDSPVLLV+  TGRVQVLTGRH+WDNPEERQ+YL RC  +GV+PREVVYGRINCGGMRMTD  G +EPL+MY+ G+SEVC ETR+WLC+QVEKRYRNSIGGSQS RRMVLE+L   E+  EGGEWEV+KALE H H NWGAT+LV+GEGKIQM+RSLGD QEK+ AYIWAEPDV+V+E+GPGEDW+V+ACSDGVGD+WYFHELGA+A  FFA KD+ G EG REGEVQELA LILE+TIERGEV PGYG+APRV SVVRGEGLKRPLWDDLSVHCARIQT
Sbjct:  355 HVRVHPLSLQELALVDESPAHLTSPRLSSPFTQGQVLSCRTGFGKAGRXXXXXGPARQVKGPLVLYGEDVLAEAELVLPP--GEDR--GGEGR----------PQWVRVMGVFDGHGLHGKEAARMAAEMFLRDMRRTTMQTLEALLAGDVGGVRRVEEERYRCLEEYLEKELQSPTGGTTGSTVQLLALTGKVFGVVSNVGDSPVLLVETRTGRVQVLTGRHAWDNPEERQRYLARCARMGVMPREVVYGRINCGGMRMTDRNGTQEPLLMYKPGSSEVCTETRDWLCEQVEKRYRNSIGGSQSIRRMVLERLKAGEE--EGGEWEVFKALEGHGHMNWGATVLVNGEGKIQMTRSLGDRQEKRAAYIWAEPDVAVFEVGPGEDWTVVACSDGVGDMWYFHELGALATAFFAKKDEAGGEGEREGEVQELAQLILEETIERGEVTPGYGVAPRVFSVVRGEGLKRPLWDDLSVHCARIQT 819
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BLAST of NO26G00870 vs. NCBI_GenBank
Match: XP_005854164.1 (hypothetical protein NGA_0170700 [Nannochloropsis gaditana CCMP526] >EKU22197.1 hypothetical protein NGA_0170700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.0 bits (1774), Expect = 4.200e-194
Identity = 336/481 (69.85%), Postives = 395/481 (82.12%), Query Frame = 0 
Query:  455 HIRVHSLTLKELALVDENPSAMLAPSLTPPSVPGSIVKCTAGYGKSGRGKAYRGPAQQVRGPVVVYGEDVLAEAELLLPASVGGARVGGAEGREGGQVAAVEAPKWVRAMGVFDGHGMHGREAARVAAERYVDDMRRTTMQTLGALMAGDVDKVRKVEFDRYRLMEAHLDKELGSPTGGTTATTVQFLACGGKAWGVVSNVGDSPVLLVDNATGRVQVLTGRHSWDNPEERQKYLDRCQALGVVPREVVYGRINCGGMRMTDAKGGEEPLMMYREGTSEVCVETREWLCKQVEKRYRNSIGGSQSTRRMVLEKLTVKEDGKEGGEWEVYKALEEHAHTNWGATILVDGEGKIQMSRSLGDSQEKKTAYIWAEPDVSVWELGPGEDWSVIACSDGVGDLWYFHELGAMAADFFAGKDQEGSEGGREGEVQELATLILEQTIERGEVAPGYGIAPRVNSVVRGEGLKRPLWDDLSVHCARIQT 936
            H+RVH L+L+ELALVDE+P+ + +P L+ P   G ++ C  G+GK+GR     GPA+QV+GP+V+YGEDVLAEAEL+LP   G  R  G EGR          P+WVR MGVFDGHG+HG+EAAR+AAE ++ DMRRTTMQTL AL+AGDV  VR+VE +RYR +E +L+KEL SPTGGTT +TVQ LA  GK +GVVSNVGDSPVLLV+  TGRVQVLTGRH+WDNPEERQ+YL RC  +GV+PREVVYGRINCGGMRMTD  G +EPL+MY+ G+SEVC ETR+WLC+QVEKRYRNSIGGSQS RRMVLE+L   E+  EGGEWEV+KALE H H NWGAT+LV+GEGKIQM+RSLGD QEK+ AYIWAEPDV+V+E+GPGEDW+V+ACSDGVGD+WYFHELGA+A  FFA KD+ G EGG  G  Q    LILE+TIERGEV PGYG+APRV SVVRGEGLKRPLWDDLSVHCARIQT
Sbjct:  355 HVRVHPLSLQELALVDESPAHLTSPRLSSPFTQGQVLSCRTGFGKAGRXXXXXGPARQVKGPLVLYGEDVLAEAELVLPP--GEDR--GGEGR----------PQWVRVMGVFDGHGLHGKEAARMAAEMFLRDMRRTTMQTLEALLAGDVGGVRRVEEERYRCLEEYLEKELQSPTGGTTGSTVQLLALTGKVFGVVSNVGDSPVLLVETRTGRVQVLTGRHAWDNPEERQRYLARCARMGVMPREVVYGRINCGGMRMTDRNGTQEPLLMYKPGSSEVCTETRDWLCEQVEKRYRNSIGGSQSIRRMVLERLKAGEE--EGGEWEVFKALEGHGHMNWGATVLVNGEGKIQMTRSLGDRQEKRAAYIWAEPDVAVFEVGPGEDWTVVACSDGVGDMWYFHELGALATAFFAKKDEAGGEGGEGGGAQ----LILEETIERGEVTPGYGVAPRVFSVVRGEGLKRPLWDDLSVHCARIQT 815
The following BLAST results are available for this feature:
BLAST of NO26G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23132.14.300e-19971.10Protein phosphatase 2C, manganese/magnesium aspart... [more]
XP_005854164.14.200e-19469.85hypothetical protein NGA_0170700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005983NSK005983Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00870.1NO26G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600486gene_7908Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100229g5gene7324Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00870.1NO26G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00870 ID=NO26G00870|Name=NO26G00870|organism=Nannochloropsis oceanica|type=gene|length=4551bp
AGGCAAACGGTGCAGTCCACATGCCCAGCCAATGATCGCCTGTACTGACA
CGACGGCCCCGCCTTCATTCCCGCCCCATCACGCCCAAGCGTCTACCACG
CCGCCCGAGGCGTCGGAGGACCAACTACTGgtgcgtggaagatgcctaat
tgttcctttatttttgacaatttggggtcgtggtagtcaaatcgaaaaaa
atccagtctcccagatgggcgcgcccattcccttttcaggctattccatc
cctcgcttaccttcctctcccaccttcccgtttcctcggctctcctattc
ttctcacacacccgagcagATCGTCGCCTTAACGAAGACTTCTGCTGTCG
AGGGGAAATCAATCTTGCCTTCTAGTCCGGGCACCATTGCCACGGACGGC
ACCCAGGCGTTCAGTAGACAGAGAGGGGAGGAGGAGGAGGAGGGGGAGGG
GGGGAAGGGGGAGAGGAGGGCTGCAACAGGGCCGCTCGACGCTCAGAGTT
TGACAGCACAAGGGTGGATTCAGAAGAAGTGGCAGGAAGAAACCACCGGG
ATCAAAAAGACGAAGGCGGCAAACGCCTCGATCCTCGACGGTACAGCAGC
CGCAGCAGCAGCAGCTGCAGCAGCTGAAGCAGACGCAGGGGGCAACAACT
CGACCAACAAGCCTCCTTCGCCCTACGGAGATCCTGTCACGCCCGAGCGT
GCTGCATCTCTCACCAACAGCGCCGGCGCGGATCTCGACAGCAGCGGTAG
CAGTTGCAGTTGTAGTAGTGGCAGCGGGCTCACCACCCTTGAGTCGAACA
GCGCCACCACCACTACCACCACCTCCATCATCACCACCACCACTGGCAGC
AGTAGCAGTAGCAGTACTATAAGCAACCAGAGCTCGGCCCAAGGCGTAGG
AAAGGGCTGCTCCTCCTCCTCCTCCTCGTCTCCCTCCCTCGTCCTTCCTT
CGTCGCCTTGCTTCAGCGGCAACAGCAGCAGCAGCAGGATTACCGGCGCT
GTCGTTCACCAGCATAGCAGCGCTAATAACTTGTCTTCATCCCCATTTTC
TGACATAACAGCAGCAGCAGCAGCAGTAGCAGCAGTACGAGAAGAAGCAG
GCGCAAGCGCCATCGGCGCAGTCGCTGCCGCCGCCCAACAAGAAAAAGGA
GGAAAGGAAGGGGGCGCGCACGACATTAAAGAAGGGGAGACGGACACGGA
AAGCAGCAGTACCTGGAGCAACAGCAGTGGGAGCGCGCCGCCGAGCCCCA
CATTGACACCCTCGTATCCTTCCTCATCTTCGGCCGCCACAGCAGCACCA
GCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGA
GCGACCTGTCCTTGTCCGGCCTCCCTCGGGCAGCAAAATGTTTCTCCCTC
ATGAGGCTTCTGAACTTGAGGTCGACCAATACGAAGAGGATGGCTCCCCC
TCCTCGTCCTCGTCTTCCTTTCATTCCTCCTCCTCCTCCTCCGCAGCAGC
AGCCGCCCTTGCCCGGGCCACGGCCGGTCAGCTATTGCGTGCCTACGCGG
CTCCTACCCCTCCCCCCCCCTCCTCGGAAGACCACATACGCGTTCATTCC
CTAACGTTGAAAGAGCTGGCACTAGTTGACGAAAATCCGTCGGCCATGCT
CGCACCCTCTCTTACCCCCCCTTCCGTCCCTGGCTCCATCGTCAAGTGCA
CGGCGGGGTATGGGAAATCAGGGAGGGGAAAGGCTTACCGGGGACCGGCC
CAGCAGGTACGCGGTCCCGTGGTTGTATACGGTGAGGACGTGCTGGCGGA
AGCAGAATTACTGCTTCCTGCCTCGGTGGGAGGAGCACGCGTGGGAGGGG
CTGAAGGGAGGGAGGGAGGTCAGGTGGCTGCGGTCGAAGCCCCGAAATGG
GTACGCGCCATGGGGGTGTTTGACGGGCATGGAATGCACGGACGAGAGGC
GGCCCGTGTGGCGGCAGAGAGGTATGTCGACGACATGCGACGCACTACCA
TGCAAACCCTAGGGGCCTTAATGGCGGGGGACGTGGACAAGGTGCGGAAG
GTGGAGTTTGATCGGTACCGTCTGATGGAAGCACATTTGGACAAGGAGCT
AGGGAGTCCTACGGGGGGCACCACGGCCACGACTGTGCAATTTTTGGCGT
GTGGAGGCAAGGCATGGGGGGTGGTGAGCAATGTGGGGGACAGCCCAGTG
TTACTGGTGGACAACGCCACGGGACGGGTGCAGGTGCTGACAGGAAGGCA
TTCGTGGGACAATCCCGAGGAACGGCAGAAGTATCTGGATCGGTGTCAGG
CTTTGGGGGTGGTGCCGCGTGAAGTGGTGTATGGAAGGATAAATTGCGGC
GGCATGAGGATGACGGATGCAAAGGGCGGGGAGGAGCCGCTGATGATGTA
CCGGGAAGGGACCAGTGAGGTGTGTGTGGAGACACGGGAATGGCTATGTA
AGCAGGTGGAGAAGAGGTATCGGAATTCAATCGGGGGGAGTCAGAGTACC
CGGAGGATGGTGTTGGAGAAATTGACGGTGAAGGAGGACGGGAAGGAGGG
AGGGGAGTGGGAGGTGTACAAGGCACTTGAGGAGCATGCACACACGAACT
GGGGGGCGACGATTCTTGTGGATGGCGAGGGGAAGATCCAGATGTCTCGG
TCGCTAGGGGACAGTCAGGAGAAGAAGACGGCCTACATATGGGCCGAGCC
TGACGTGAGCGTGTGGGAGCTTGGCCCCGGGGAGGATTGgtgagagaaca
gtatcttcccccgtccttctccccctccttccctttttccctccctcctt
ccctcctttcctcctcctctccactcttttcttgacagatgggcagagcc
tcatgtcccctctctcccttcttacttccctccctccatcctcagGTCTG
TCATAGCCTGTTCGGACGGCGTGGGCGATTTGTGGTACTTCCACGAGCTT
GGAGCGATGGCAGCGGATTTTTTCGCCGGAAAGGACCAGGAGGGGAGTGA
AGGCGGGAGGGAGGGAGAGGTCCAGGAGTTGGCGACGTTGATACTGGAGC
AGACGATTGAGAGGGGAGAGGTTGCCCCGGGGTACGGGATTGCGCCACGG
GTGAATAGTGTGGTGAGGGGGGAGGGCTTGAAGCGCCCTCTGTGGGACGA
TTTGAGCGTCCATTGCGCAAGGATTCAAACCTAGACGAACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCCCTTCCTCCATTTTTGTTGTGTCGCGTG
GATGCCGTGACCGGCGAATGGGACCGTAGGAGGGAGGGAATGAGGCCGAA
AAGGCAAAAATTGTGGTGGTGAATATCTTGTAGAAGGGAGGTTAGAATAA
GGAAAGTAAGAGAGAGATAAAGGGGACCAGAGAGAGGGGATGAGAGAGAG
AAGGCATGTATGTATAACTGTCTTTCTCATCCTGCTGGTCTACTCGGTCA
CTTCCTTTATGTGAAAAAATAATTAGGCGTTCCTTCGCCACCCAGCCAAG
AAGGGGAAAAAGAAGGAGGAGAAGGAAAAGCTGGCATGTAGCCATAACAG
CGAGGTGGAGATTGTTTGAATATCAGAGTCGGTGTGTGGGCTTGTCGTAT
GTGTTTGGGGAATGCGCGCGCATGAGACCACCGGAAGGAAAACGAGGGGA
GCAGATGCAGTAGGAGCAGCAGTATCACCAGCAGTAAGATTAAGGGAACA
GTGGAAGAGTTCCAAGAAGATGAGCAGGAAACGGAAAGGAAGAAAAGGGA
GATAGAAAGAGAAAGGGAGAGACAAGAATGATTTGTCATGCAGGAGTGTG
TGTGGGAAGAGCAGCAGCAGCCGCAGCAACAGCAACAGGAGGGTAGCTCT
TACTTACAGGCAGACACACCGTGACTGTGTTTGATTCGTTTGCCTCGTCT
TCCCTTCTGTCGGGTCCTTTTTGCCGCGTAGGAGACGCTCGGAATTGATT
GAGGAGGGGGAGGAAGTCGAGAATGAACGGGGATGGAGAAGCAGAAGAGG
AGAAGTAGAAGAAGCAATATAGGATAGTAGAGTGAGGCCAAGCCAACAAC
TTAATGGCTCTGGTCCCAGCGACAAACCGCAACAGTTGTTGTAGCAGCAG
CAGCAGCGCCAACGAACATTAGGCACGAATAACATAATATAAAAACAATG
TCAGAAAAGGGCGTAAAGCTTTAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAT
AACGGGGGCAATAATAACAACAATTACAGCAACGAAGAAAAGAAAATGAG
GGGTACAGAGAACGGTGTAGAAGTACGAAGGAGGAAGGGGAAAAGGGAAG
AGCAAATGGGGCCCAAATTCTCGCACTATTGGGTGTTCAGGGACAATTGC
ATGAGCAGAGGAATACTTAAGTCGGTCACACAACATGAGCGTGACAACTG
GAAGAAAAAAACACGAACAAAAAAAAATAATGCGAAAAAGAAGTAGCCAT
CCTTACAACGACGAATGGTCGAGCACAGGCGGGAGGTTAGATGAGAGAAG
A
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protein sequence of NO26G00870.1

>NO26G00870.1-protein ID=NO26G00870.1-protein|Name=NO26G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=936bp
MIACTDTTAPPSFPPHHAQASTTPPEASEDQLLIVALTKTSAVEGKSILP
SSPGTIATDGTQAFSRQRGEEEEEGEGGKGERRAATGPLDAQSLTAQGWI
QKKWQEETTGIKKTKAANASILDGTAAAAAAAAAAEADAGGNNSTNKPPS
PYGDPVTPERAASLTNSAGADLDSSGSSCSCSSGSGLTTLESNSATTTTT
TSIITTTTGSSSSSSTISNQSSAQGVGKGCSSSSSSSPSLVLPSSPCFSG
NSSSSRITGAVVHQHSSANNLSSSPFSDITAAAAAVAAVREEAGASAIGA
VAAAAQQEKGGKEGGAHDIKEGETDTESSSTWSNSSGSAPPSPTLTPSYP
SSSSAATAAPAAPAAAAAAAAAAAATERPVLVRPPSGSKMFLPHEASELE
VDQYEEDGSPSSSSSSFHSSSSSSAAAAALARATAGQLLRAYAAPTPPPP
SSEDHIRVHSLTLKELALVDENPSAMLAPSLTPPSVPGSIVKCTAGYGKS
GRGKAYRGPAQQVRGPVVVYGEDVLAEAELLLPASVGGARVGGAEGREGG
QVAAVEAPKWVRAMGVFDGHGMHGREAARVAAERYVDDMRRTTMQTLGAL
MAGDVDKVRKVEFDRYRLMEAHLDKELGSPTGGTTATTVQFLACGGKAWG
VVSNVGDSPVLLVDNATGRVQVLTGRHSWDNPEERQKYLDRCQALGVVPR
EVVYGRINCGGMRMTDAKGGEEPLMMYREGTSEVCVETREWLCKQVEKRY
RNSIGGSQSTRRMVLEKLTVKEDGKEGGEWEVYKALEEHAHTNWGATILV
DGEGKIQMSRSLGDSQEKKTAYIWAEPDVSVWELGPGEDWSVIACSDGVG
DLWYFHELGAMAADFFAGKDQEGSEGGREGEVQELATLILEQTIERGEVA
PGYGIAPRVNSVVRGEGLKRPLWDDLSVHCARIQT*
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Synonyms
Publications